LOC110505249 (LOC106610595)


Basic Information

Item Value
gene id LOC110505249
gene name LOC106610595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 4890876 ~ 5188060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962249.1
TGAGGGATCAGAGCTGAAGATGGAGCTTTTCTGGATTTTGGTATTTTCTATCATCCACCCGTATGCGCGAGGGCAAGGAGTGTACGCCCCTGCCAATGCCAAGATCGTGCACGAGGGCCAGGCGTGTGTGGTGAAGGACGACAACATCAGTGAGAGGATCTACACCATCAGAGAGGGAGACCACCTGATGCTCAAATGTCTGGTCAAAGGACACCCACGACCACAGGTGCGTTGGACAAAGACAGCAGGCAGCGCCTCTGACAAGTTCCAGGAGACGTCCATCTACAACGAGACGCTGCGCATCGAGGGCATCCAGCGGGTGCAGGGCGGCCGCTACTACTGCAAGGCCGACAACGGGGTGGGGGTGGCTGCAATCAAGTCCATCCGGGTAGACGTGCAGTACCTTGACAAACCAGTTCTGACGGTGCACCAGACCATCAGCGATGTGCGCGGGAGCTTCTACCAGGAGAAGACGGTGTTCCTCCGCTGTACTGTCAACTCCAACCCCCCGGCCCGCTTCATCTGGAAACGAGGCACCATTCCCATAGAGCAGAGCAAGGATCAAGGAGTGGACATCTACGAACCGCTATACACACAGGGGGAGACCGAGGTGCTGAAGCTGAAGAACCTGAGGCTGAAGGACTTTGCCAACTACACGTGCCAGGTGTCCGTTCGCAACGTGTGTGAAATCCCTgatagctctgtcacctttctcCTCACCATCGGCACCAcTCCCCCTGCTCTACGGCTTTCTGTCAACGAATCCTTGGTGGTAGACCCCGGGAAGGACGTGACCCTGTCATGCGAGGTGACCGCCGGATTGCCTAAACCCACCGTCACCTGGTCGCGCTACCTCAACCCGTTGCCGAGAAACTCGTTGGTAAGAGACGGGACTCTGGAGTTGCGCTCGGTGACGCCCGCCGACTCAGGCTTCTACAACTGCACTGCAGTCAACAATGTGGGGAACCCAGCCAAGAGGAACGTCAACCTCCTCGTCCGAaGTATGGGTAACCTTACCTTCCAGATCACACCCGACTCCAACAAGGACAGTGAGAGCATCCAGATGGGCCGTGACCTCAAGCTTTCATGCCATGTGGACGCGGAGCCCCAGGACAAGgTGAACTACACGTGGTACCAGAATGCGGTGCTCATCTACAACTCGGACAGCCTGATTGTGCTGCACAGCGACCCAGACATGGCGCCTGGTACTAGCAGTCTGGAGATCGTGGACATGAAGTTCCACGACCAGGCCACCTACAGCTGCGTGGCCAACTTCCCCGGGAGCACAGTGCCCGAGCTGAGGGTAGATGTCAACATCACCCAGAACAGCGTTACTCCCCCAATTTTAACGGTGCCAGAAGGGGGCCAGGTGGTGAGCGTGAGGGAGGGAGGCACCACCGAGCTGGTGTGCCTGGTTGATGGCAAGCCCCGCCCACCCGTGCTTTGGTCGCGCGCCGACAAGGACCTGACCATGCCCACGGGTGAGTGGGCGGTGGAAACACGCGACGGGCGCCTCCGCCTGACCAACGTCACCCGCGACCTGATGGGTGCCTACCGCTGCCAGACGGCGCCATACAATGGCCTCAACGTCAAGCCACGTCAGGCACAGGTTCAGCTGAATGTACAATATGCTCCAGTCCTGGACCCGGTTTTCCAGGATGTTCGCTCGCCCAACTACCAGTTTGTAACCCTGCGCTGCATCATTCAGAAGTCCAACCCGCCACACATGGCCAGCATCCGCTGGACGCGAAACGGCGAGCCCCTGACCTCCCTGACCCCAAACCCCCAGGAGAACCCGCAGCTGAAATTCAAATTGGACCCCAACAACAACGGCACGTACAAGTGCCATGTCAACAACGGTGTGGGCTCTTCTACCTGCACCTTCAACATCTCATCCCGTCCATACAACGCTGAGTTCTACTTTGACACGCCCAACCCCATCCGCAATCTGAAGGGCAACAACTTCTCCTACAACCTCCAGTGGACCCAGAGAGAGCCCGTGGCTACAGACCGGATCATTGGCTACTGGGTCAACGTTCGCAATATGAATCAGATGAACCTGTTCTCCAAGCAGATCGACAAGGAGCCGGTGAAGGGAGGCCTCATGTCCTACATCCTGACTGACCTGAAGATCCCACTCTCCTATGAAATCCGCCTGGCCCCCATCACCACCTACAGCACAGGAGACTATGTCAGTCGCACCATCAAGTACTCAGAGCCCTACAATTACCCAAGACCTTCAGACCATGTTTGTGGCTTTGAGGACAAGCACATCTGTGGTTTCTCCCAGGACCGGGGCGACAATTTTGATTGGACAAGACAGAACCACCTGACACAGAACCCCAAGCGTTCATCCAATACCGGCCCAGAGATGGACAGGAGTGGCACCAAAGAAGGTTGCTACATGTACATTGAGGCCTCTAGTCCCCGGGTCATGGGGGACACTGCCCGTCTCTTGTCCCCCCTCTACAACGTGACTGCTGCCAGGGGCCCCAAGGGCTCTGGTCGTTTCCCTTACTGCATATCTTTCTTCTACCACATGAAGGGCAAGCAGACCGGTACCCTGGACGTGTGGCTGAGGGTGAAGAGCATCGCCTCTGTGGACACTAAGGTCTGGAGCCTGATTGGGAACCAGGGTCCTGACTGGAACCAGGCCAACATCATTGTCAACCCCAGCGGACCCTTCCAGGTGGTGTTTCAGGCCATTCGGGGATCGGGCTACGAAGGGGACATTGCCATCGATGATGTATCAGTCACCAAAGGGAAATGCAAGCAGGAGAATTCCGTTTCCAACACAGGTATGTATGTCACAATATTACTGTAG

Function

NR:

description
MAM domain-containing glycosylphosphatidylinositol anchor protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962249.1 True 2824 mRNA 0.57 17 4890876 5188060

Neighbor

gene id symbol gene type direction distance location
LOC118944339 NA coding upstream 7736 4879881 ~ 4883140 (+)
eprs1 LOC106610596 coding upstream 69996 4732178 ~ 4820880 (+)
LOC118944385 NA coding upstream 71672 4819068 ~ 4819204 (+)
LOC118944384 NA coding upstream 72951 4817788 ~ 4817925 (+)
LOC110505243 LOC106610599 coding upstream 997787 3797815 ~ 3893089 (+)
LOC110505250 LOC106610594 coding downstream 197604 5385664 ~ 5404183 (+)
si:ch211-266g18.6 LOC106610593 coding downstream 228754 5416814 ~ 5470785 (+)
LOC110504174 LOC106561892 coding downstream 299648 5487708 ~ 5490330 (+)
LOC110505253 LOC106610592 coding downstream 305336 5493396 ~ 5512067 (+)
si:ch211-266g18.9 LOC106610591 coding downstream 353187 5541247 ~ 5549412 (+)
G1942695 NA non-coding upstream 53287 4837347 ~ 4837589 (+)
G1941673 NA non-coding upstream 78229 4812306 ~ 4812647 (+)
G1941594 NA non-coding upstream 225073 4665489 ~ 4665803 (+)
G1941569 NA non-coding upstream 249844 4640725 ~ 4641032 (+)
G1941565 NA non-coding upstream 255791 4634572 ~ 4635085 (+)
G1943429 NA non-coding downstream 192546 5380606 ~ 5380848 (+)
G1943439 NA non-coding downstream 196702 5384762 ~ 5385029 (+)
G1943453 NA non-coding downstream 220041 5408101 ~ 5408558 (+)
G1943461 NA non-coding downstream 282779 5470839 ~ 5472658 (+)
G1943482 NA non-coding downstream 291122 5479182 ~ 5479394 (+)
G1940966 NA other upstream 1151086 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3084839 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 3921813 963874 ~ 969082 (+)
G1937035 NA other upstream 4234959 655528 ~ 655917 (+)
G1943555 NA other downstream 510958 5699018 ~ 5699584 (+)
LOC110505260 LOC106613993 other downstream 624473 5812504 ~ 5824543 (+)
G1944456 LOC106598199 other downstream 1277729 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1756151 6944211 ~ 6951262 (+)

Expression


Co-expression Network