si:ch211-266g18.6 (LOC106610593)


Basic Information

Item Value
gene id si:ch211-266g18.6
gene name LOC106610593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5416814 ~ 5470785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962781.1
agtcTAATTACGTTGTGCatggcatcagacaggagaccgtccaaccatgatgtatcctgCTTTTTTTGGAAGTGTTAAACTGACATAAACTTCATGTCATGATGAAGTCCACAAAGGATTTATTGGAGTTTCTGGACCTGAGTCATCTGTCCACAGATGAGGAATTGGCAATCCGACAGGTGCTTCAGCGAGATGACAACCTCAGGAAGCGAGAGACTGGACGCATACGTCGTCTGCAAATCTCCATTCCTGACCCTAAAAAGCTCAAAGTTATGACCGGGGAGTGGTTTGAAGAGCTCCGGACTCGTCGCTATGGACGACAGTCAGACGTGACAGAAGTTCTCAGGTCTTCAATGAGAAGAAAGAAGCCAACAGCCTTTAGGACTAGCACTTTCAGCGATGTCGGACAAACCGAAAACAaagaaggagaaaaggagaatAAGGACCCTCAAACCAAGGCTTCTGAGATCCAGACACCAGACACAAGTTTCCTCAGCCTATCTTTTCGTGAAAAGGCTAACCAGGAACTTAGCAATGAGGAAAGCACTGTGGATACTGACAACACCACTGTTGATGTTTCTGAATGGAAACATCCACTCTACAGGTCTCATGAGGGGCCTGCTAGTGAGGAAAAATGTACCAACCCATTTACATCTCAAAATCAAGAGATGCCATACTCTAGCACAACTGACACTGTCCACCAATCACCAGACAGGAAACCTGGACAAGAAAACAAGACAGAATCTGCTTATATTGCCAATGTCGTTCTTGAGTCGCAGCTCGGTCCTATCAACGTATCTAGTCCCGACCCTCAAACCAAACCAACAACCAAATCCCTGGACACTATTGTGAATCTGAAGTCTAGCAGTAAGCTGGTGTTTCCCCCTGAGATAAAGGATGATCCAGAGAAGAACAGCTCTGTAATGTATGTAGACCCCTATGTATGGACACAACCAGAGTTCAAAAGTAGCGTCATAGAGGCCGAGCCAAAAGACACAGAGATGGCCATAGGAACAACTAAAACAATAGTGATATTGCCTAGGGTTGACACACATAATAGGTCAGAGGAGAGCACCATTGGTTTTGATGTTGAGCATTCAGGGCATGAGTCTCTCACTACTCCGTCTTTTGAGATCTCGCCACAGAGCAGCCACATAAAGCCAAAGCCAAAAGAGGTCAACTTTACCCATGGAAAGACAAATACCGCAGGGACTCCACCTAGTGGCACTCTGACCCAATCAGAAGATAAGTTCAACAACAGGAGACCTGATGATGTAGTTTCAGAACGTGAGGGGCCTCGTAGCATGCAATCTTCAGAGGTCAAGTATGAGAAGGAGCAATTTCAGCTTGAATATGAAGATATGCTGGGGCTGGAATATGTTAGGCTAAACCAAGATGTTTCAACAGAGAGCCAAGAACTTCAAACAGACCAAAACCACAGTGAAATGCTATCATTTGAGGATACATACTCTCTCCAGAGAAATGACCCTTTGCCTACCATTGAGTCATTAAAATGTGTAGAGAAACCTCAGTACTTGCTCCAAGAGGGACCACAGGACATACTCACCATAGACAAACATGTTCCTGTTGATGAATCATCTATCTTCAAAGAGGCCAGACCCAAGAAGGACCTAGTTTGTTCAGAGGAATCGCTACCATTTGCTGTTCATGTTCAAGATGAAGTCATCATTTCTAGCAATCTCCATACATCAAAGGAGGACACTGGTGAGGACAAAGAGAAGGAAGTGTCAAAGTTTAGAAATGATTCTCTCTCACAGACTGCAATTGTTGGTGGCATGAAACATGTAACAAAGATGAACCATAGGGTTTCTCCAGGAGATTTTGATGAAGAAAATAAACAAGAACAGATGGATGTAAAGAAGTCTACTGAATCTCTAAGTAAAGCAGTGGATGGGCAGACATTTGTTACTTTAGATGGAGAGGAGGTAGATATATTTAAGGAAAGGAATACTTTGGAGTCCAAGCTGTCTTCAAATGTAGACTTTCAAAAAGTGAATCAGAAGACTGGAAAATGTCTCATTCCCACAATAGTGGTCAATTCCTCTGAATCCCGAGTGACAGATGACACTGAAGAGCACCCAGCTACGTCTCAGGAATCCCCTTCAGTGGTTGTTACACCTATGGACACCTGGGAGGATGAGGGTCTGGACTCAGATGATGACTGCAGCTCTGTCTCCAGCTATGGGTCTGACTTCTCTGCAAGAAGAGGTTATGGCTCCATTGCTTTGGGCCTCACTGGGCGCACTGGCAGTCTTCTGAGTGTGTACAGTGAGGCGGGGGACTTTGGGAGTGTGACTGTCCAGGGGGCAGTGGAGTTCTCGCTAAGGTACAGAAATGCAGAGGAGCTGATCGTCACAGTGGAGCAGTGTCAGGACCTTGCCTACGCCAACCCTCGCAAGCAGCGCACTGACCCATATGTAAAGACCTACCTCCACCCTGACAAATCCCGCCATAGCAAGAAGAAGACCTCCATCAAGAAACGCACAATTAACCCCGTGTTTGGTGGAGAGACACTGAAATACAAGATGACGATGGATGATCTAAAAGGCAGGACACTGAACCTTTCTGTGTGGCACAATGACTCCAGAGGGAGAAATGTCTTTCTGGGGCAGGTAGCCATTGACCTTAAGACCTGGGACTGGGGGCATGAGACCCTTACCTGGTACAACCTACAGCCCAAGAATCCTGGCGTTCAGGACTCTCCTGAATATCATGGACTGTTGACAGTAGCACTGAAATATATTCCCCCTGGCTCAACAGGTGTTGACAAGATGAACTCAGGGGAGGTCCATGTGTGGCTGAAGGAGGCCAGAGAGCTGCGTAAGCTAAAGCCTCAGGGTGTCGACTCCTTTGTGAAGTGTTACATGTTGCCTGACACAAGCAAGAAGAGTCGTCAGAAGACGCGGGTGGTGAAGAAGAGCCAAAAGCCTGTGTATAACCACGCCATGGTGTACGACGGTTTCCGTGCCGGAGAGGTCAGAGAGGCTTGCTGCGAGCTGACTGTGTGGGACCACAACAAACTCTCCAATCAGTTCCTGGGAGGGGTACGCCTCAGTCTGGGCACAGGACAAAGCTATGGCAAAAACGTGGACTGGATGGAATCTGTCAATGAGGAAATTCAACTTTGGGAAAATATGCTATCAAGTCCAGATGCTTGGGTGGAGGGTGAGATCCCCCTTCGTTCCTCTATGACCCCGAGGAAGTAGAATAAATCAGTGCCGGGAGCGCAGCGTAGCGGTAGTGCTAGAGTCGAACATGCGCATATTTCCATGAGCAACACTTTTCAACTTTCTACCCTCTTCAACTGTACCCCATAATCTACATTCTCACTTTTCTGAATAAAGGAAAACAAATATATCAGGAGGATGAGGTTCGGTAAGAGGTAATTACTGCTCAGAACCTTTTTCTTGTGATAGAGAGTCTTGATTGTGATTAATCAAAGTATAAAGAATTAGAATTGCAATGCATATTTTTTTCagtgtatttttttattcacTTATACtttacttacagtaccagtcaaaagtttggacacatctacccattccagggtttttcttaatgtttactattttctacattgtagaataatag
>XM_021584357.2
cTAATTACGTTGTGCatggcatcagacaggagaccgtccaaccatgatgtatcctgGTGTGTGAAGACTGAAAACAAAACTCATTTTTCTCCTCATTTGTATCTTTGGGACTCTTTTGGAATTACAGCTTTTTTTGGAAGTGTTAAACTGACATAAACTTCATGTCATGATGAAGTCCACAAAGGATTTATTGGAGTTTCTGGACCTGAGTCATCTGTCCACAGATGAGGAATTGGCAATCCGACAGGTGCTTCAGCGAGATGACAACCTCAGGAAGCGAGAGACTGGACGCATACGTCGTCTGCAAATCTCCATTCCTGACCCTAAAAAGCTCAAAGTTATGACCGGGGAGTGGTTTGAAGAGCTCCGGACTCGTCGCTATGGACGACAGTCAGACGTGACAGAAGTTCTCAGGTCTTCAATGAGAAGAAAGAAGCCAACAGCCTTTAGGACTAGCACTTTCAGCGATGTCGGACAAACCGAAAACAaagaaggagaaaaggagaatAAGGACCCTCAAACCAAGGCTTCTGAGATCCAGACACCAGACACAAGTTTCCTCAGCCTATCTTTTCGTGAAAAGGCTAACCAGGAACTTAGCAATGAGGAAAGCACTGTGGATACTGACAACACCACTGTTGATGTTTCTGAATGGAAACATCCACTCTACAGGTCTCATGAGGGGCCTGCTAGTGAGGAAAAATGTACCAACCCATTTACATCTCAAAATCAAGAGATGCCATACTCTAGCACAACTGACACTGTCCACCAATCACCAGACAGGAAACCTGGACAAGAAAACAAGACAGAATCTGCTTATATTGCCAATGTCGTTCTTGAGTCGCAGCTCGGTCCTATCAACGTATCTAGTCCCGACCCTCAAACCAAACCAACAACCAAATCCCTGGACACTATTGTGAATCTGAAGTCTAGCAGTAAGCTGGTGTTTCCCCCTGAGATAAAGGATGATCCAGAGAAGAACAGCTCTGTAATGTATGTAGACCCCTATGTATGGACACAACCAGAGTTCAAAAGTAGCGTCATAGAGGCCGAGCCAAAAGACACAGAGATGGCCATAGGAACAACTAAAACAATAGTGATATTGCCTAGGGTTGACACACATAATAGGTCAGAGGAGAGCACCATTGGTTTTGATGTTGAGCATTCAGGGCATGAGTCTCTCACTACTCCGTCTTTTGAGATCTCGCCACAGAGCAGCCACATAAAGCCAAAGCCAAAAGAGGTCAACTTTACCCATGGAAAGACAAATACCGCAGGGACTCCACCTAGTGGCACTCTGACCCAATCAGAAGATAAGTTCAACAACAGGAGACCTGATGATGTAGTTTCAGAACGTGAGGGGCCTCGTAGCATGCAATCTTCAGAGGTCAAGTATGAGAAGGAGCAATTTCAGCTTGAATATGAAGATATGCTGGGGCTGGAATATGTTAGGCTAAACCAAGATGTTTCAACAGAGAGCCAAGAACTTCAAACAGACCAAAACCACAGTGAAATGCTATCATTTGAGGATACATACTCTCTCCAGAGAAATGACCCTTTGCCTACCATTGAGTCATTAAAATGTGTAGAGAAACCTCAGTACTTGCTCCAAGAGGGACCACAGGACATACTCACCATAGACAAACATGTTCCTGTTGATGAATCATCTATCTTCAAAGAGGCCAGACCCAAGAAGGACCTAGTTTGTTCAGAGGAATCGCTACCATTTGCTGTTCATGTTCAAGATGAAGTCATCATTTCTAGCAATCTCCATACATCAAAGGAGGACACTGGTGAGGACAAAGAGAAGGAAGTGTCAAAGTTTAGAAATGATTCTCTCTCACAGACTGCAATTGTTGGTGGCATGAAACATGTAACAAAGATGAACCATAGGGTTTCTCCAGGAGATTTTGATGAAGAAAATAAACAAGAACAGATGGATGTAAAGAAGTCTACTGAATCTCTAAGTAAAGCAGTGGATGGGCAGACATTTGTTACTTTAGATGGAGAGGAGGTAGATATATTTAAGGAAAGGAATACTTTGGAGTCCAAGCTGTCTTCAAATGTAGACTTTCAAAAAGTGAATCAGAAGACTGGAAAATGTCTCATTCCCACAATAGTGGTCAATTCCTCTGAATCCCGAGTGACAGATGACACTGAAGAGCACCCAGCTACGTCTCAGGAATCCCCTTCAGTGGTTGTTACACCTATGGACACCTGGGAGGATGAGGGTCTGGACTCAGATGATGACTGCAGCTCTGTCTCCAGCTATGGGTCTGACTTCTCTGCAAGAAGAGGTTATGGCTCCATTGCTTTGGGCCTCACTGGGCGCACTGGCAGTCTTCTGAGTGTGTACAGTGAGGCGGGGGACTTTGGGAGTGTGACTGTCCAGGGGGCAGTGGAGTTCTCGCTAAGGTACAGAAATGCAGAGGAGCTGATCGTCACAGTGGAGCAGTGTCAGGACCTTGCCTACGCCAACCCTCGCAAGCAGCGCACTGACCCATATGTAAAGACCTACCTCCACCCTGACAAATCCCGCCATAGCAAGAAGAAGACCTCCATCAAGAAACGCACAATTAACCCCGTGTTTGGTGGAGAGACACTGAAATACAAGATGACGATGGATGATCTAAAAGGCAGGACACTGAACCTTTCTGTGTGGCACAATGACTCCAGAGGGAGAAATGTCTTTCTGGGGCAGGTAGCCATTGACCTTAAGACCTGGGACTGGGGGCATGAGACCCTTACCTGGTACAACCTACAGCCCAAGAATCCTGGCGTTCAGGACTCTCCTGAATATCATGGACTGTTGACAGTAGCACTGAAATATATTCCCCCTGGCTCAACAGGTGTTGACAAGATGAACTCAGGGGAGGTCCATGTGTGGCTGAAGGAGGCCAGAGAGCTGCGTAAGCTAAAGCCTCAGGGTGTCGACTCCTTTGTGAAGTGTTACATGTTGCCTGACACAAGCAAGAAGAGTCGTCAGAAGACGCGGGTGGTGAAGAAGAGCCAAAAGCCTGTGTATAACCACGCCATGGTGTACGACGGTTTCCGTGCCGGAGAGGTCAGAGAGGCTTGCTGCGAGCTGACTGTGTGGGACCACAACAAACTCTCCAATCAGTTCCTGGGAGGGGTACGCCTCAGTCTGGGCACAGGACAAAGCTATGGCAAAAACGTGGACTGGATGGAATCTGTCAATGAGGAAATTCAACTTTGGGAAAATATGCTATCAAGTCCAGATGCTTGGGTGGAGGGTGAGATCCCCCTTCGTTCCTCTATGACCCCGAGGAAGTAGAATAAATCAGTGCCGGGAGCGCAGCGTAGCGGTAGTGCTAGAGTCGAACATGCGCATATTTCCATGAGCAACACTTTTCAACTTTCTACCCTCTTCAACTGTACCCCATAATCTACATTCTCACTTTTCTGAATAAAGGAAAACAAATATATCAGGAGGATGAGGTTCGGTAAGAGGTAATTACTGCTCAGAACCTTTTTCTTGTGATAGAGAGTCTTGATTGTGATTAATCAAAGTATAAAGAATTAGAATTGCAATGCATATTTTTTTCagtgtatttttttattcacTTATACtttacttacagtaccagtcaaaagtttggacacatctacccattccagggtttttcttaatgtttactattttctacattgtagaataatag

Function

NR:

description
synaptotagmin-like protein 2

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962781.1 False 3615 mRNA 0.46 16 5416814 5470785
XM_021584357.2 True 3683 mRNA 0.45 16 5416817 5470785

Neighbor

gene id symbol gene type direction distance location
LOC110505250 LOC106610594 coding upstream 12631 5385664 ~ 5404183 (+)
LOC110505249 LOC106610595 coding upstream 228754 4890876 ~ 5188060 (+)
LOC118944339 NA coding upstream 533674 4879881 ~ 4883140 (+)
eprs1 LOC106610596 coding upstream 595934 4732178 ~ 4820880 (+)
LOC110504174 LOC106561892 coding downstream 16923 5487708 ~ 5490330 (+)
LOC110505253 LOC106610592 coding downstream 22611 5493396 ~ 5512067 (+)
si:ch211-266g18.9 LOC106610591 coding downstream 70462 5541247 ~ 5549412 (+)
col10a1a LOC106610590 coding downstream 106410 5577195 ~ 5583625 (+)
LOC110505255 LOC106610589 coding downstream 144284 5615069 ~ 5693032 (+)
G1943453 NA non-coding upstream 8256 5408101 ~ 5408558 (+)
G1943439 NA non-coding upstream 31785 5384762 ~ 5385029 (+)
G1943429 NA non-coding upstream 35966 5380606 ~ 5380848 (+)
G1942919 NA non-coding upstream 266424 5145139 ~ 5150390 (+)
G1942695 NA non-coding upstream 579225 4837347 ~ 4837589 (+)
G1943461 NA non-coding downstream 54 5470839 ~ 5472658 (+)
G1943482 NA non-coding downstream 8397 5479182 ~ 5479394 (+)
G1943484 NA non-coding downstream 10507 5481292 ~ 5481606 (+)
G1943496 NA non-coding downstream 27594 5498379 ~ 5498609 (+)
G1943497 NA non-coding downstream 28192 5498977 ~ 5499206 (+)
G1940966 NA other upstream 1677024 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3610777 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4447751 963874 ~ 969082 (+)
G1937035 NA other upstream 4760897 655528 ~ 655917 (+)
G1943555 NA other downstream 228233 5699018 ~ 5699584 (+)
LOC110505260 LOC106613993 other downstream 341748 5812504 ~ 5824543 (+)
G1944456 LOC106598199 other downstream 995004 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1473426 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 2053096 7523775 ~ 7605647 (+)

Expression


Co-expression Network