si:ch211-266g18.9 (LOC106610591)


Basic Information

Item Value
gene id si:ch211-266g18.9
gene name LOC106610591
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5541247 ~ 5549412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584358.2
TTGTACTCCTAGGCTGAGAATAAGTGGTGTAAAAGGCTGACACAGACTTCCTCTCAGGATGGGAGTCACATGATGAGGTCAAACTACACTTCACATGAGAAGGGATTTCTAACAACACAAGATCGAGGGTATTCTAATCTAATATCGAGAACAGCATCGGCATACATCAACAAATACAGCAGCAATGAGTTTGAAAGCCTTCACTCAAGTGCAAGTCTATGAAAAACTTCCCAACCCTAAAGAAAAAGACAAATTCAGCATCCATAGCCTGGAGTGTTATGACAGAAATATATACATTGGAACCAAAGACTCATTGGTCCAACACCTTATCCTACCCAGCAGCAGTGACACGAAGGACTCCAGTCAAAGTCCTCGGGAGGGGAGGATGAAACTGCTAGGCTCAAGCAGCCCAGTCACCCAATTAAGGGTGATACCAGTTCTCAATCACCTTCTGGTTCTGTGGGATCGTTCCGTTAGCGCCCTAAACATGTTCTCCCTAGAACCCCTTCCTTTCCTGAAGCGGATCCAACACGTGTCTTTCTTTGAGGTGTGTGAATCGGCACTGTCAACCTCAtcgcagtctgtgtgtgtggagctggTGACAGCTTCTAGCAGGAGCAGAGTGGTCCGGatccatgttgtgggggtggagagatgggatTGTGTTAAAGAGGTGTCTCTACCCCAGGAACCTGTGGCCTTAGCTGTGTATGATAACACTTTGTGTGTGGCCACCAGTGACAGGTATTTCCTCCACGACCACAAGAGTGGAAGCACCATTGATCTCTTCCCTCACAACCTGAGCAGGCAGAATATCATTGTGAGCACCGCAGGAAAAGGGGAATTCCTTTTAAATGGGCCCGGCTCCTTGGGCATGTTTGTCATGAAGAATGGCATATGCCAGCGGCCTCCAGTGCAGTGGTCTGAGGAGCTGTTGGCAGCGGTGGTGTGTTACCCTTACATCCTGGCCCTGCAGCCTCAGGCTCTCTATGTCTACAGTATGGTGGATCAGCATCTCAAACAGACTGTGCCTCTGCTTAGGGCCAGGGGCCTACTCTCAACAACAGAGGGTGTGTACGTTTTTATGGAGAGAGAGATCCTCGGTTTGTCCCATGTACCATTTGAGGAGCAGATCCAAACCCTGGTAAGGtatgagagagtggaggaggcaCTGGGACTGCTTGGTGGAGTTCAAGCTCATCTTCCACAGGTTTCTTACAAGGAGCTGCATAAGATCATCACTTGCATGGATGGATTCATTAAATTCTACCAGGGGTCTTTTTCAGAGGCCAAAGAACTTTTTATCAAAGGGGAGTTGGACCCTAGAGAACTCATCAGCTTGTATCCAGAGATGGAACCACTCTGTGAGACCTTTCATTCCCAGCTGGTCAAAGTGAACAATGCAAAGGAGCTCTTGGCACTACGGCAAGAGGACAGGACCACATTTCAACAGTATCTAGACTTCCTGGGCGATTTCCTAATGGTGGTTCGAGGGACGAAGCAGGGAGTTGAGTGCAGTGAGGATATTGATACTGCACAACTGAGAATGTACACAGAGCAAGGTGACAGAGTAGACCTGGATGCACTTGTGTCCTCTCCCAATTCCTGCTCAATCGACAAATGTGTGCCTCTCCTTGAGCTGCACAAGAGatttttcaCACTTGGATTACTCTACCAGAGTCATGGTCACCATATCAAAGCAATCCAGACTTGGGTGAAAATTACTGATGGGCAATATGAAGACAGCTCATGTTCAAATGTGTATGAGCACATTGTGAGAACTCTCAGTCGACTAAAACAGAGAGACGTGGTTTGGACGTTTGCAGACTGGGCTCTCCAAAGAAACCAGGAGGTTGGAATCCAGATTTTCACAAAAAGAGATCCAGAAGACCAAGACACATTTGCACAGGAGGATGTCCTCACTTTTTTAAAGAATTACTCTCTAGCTTTGATGTTGTTCCTGGAATTTCTGGTCCATGATTTGAAAAGCAAGGAGGAGAAGCATCATACCCTTTTGGCCACCGCATATGTCACCCATATACTCAGAGCCTTACAGAATGGAAAGGGTACGGATTCAGATGGAGGAATGACCAGAGATAAACTGCAACAGTTGCTGTGGCAGTCTTCCCTCTATGACACCATGACAGTACATGAGGCCATCCAGCCGACAGTCCTGCACACCGAGCAGGCCATCCTGCTCGGGAGAGCTGGTGACCACTATCAGGCCCTACAGACCTTGGTCCACAAAGAGAGAGACCTCCAGGTTGCAGGGGCCTACTGCAGGAGGGCTGCTGGGTGGCAGGaaagggaactggaacacacccTTTTCCTCACCCTGCTCCGGATCTACCTGGGCTCCAATGAGCTAGCGAGTGCGGCCGTGGACCTGTTGAATGCCAACGCTGCTGCTTTTGACCTGGATACAGTCCTCCAGGTTCTGCCGGATTCCTGGTCTGTTCAGCTGGTCTCCCAGTTCGTGTTGGGGTCCCTTCGAGGGACTTTCCATCAAAGACGAATGGCAGGGGTAGAGAGGGGCCTGGCCCAGGTAGAACTCCTTAGACACAAGTACACTTGGGCCCAAGCCTCAAAAAGAATGCTGAAATTGGATAAGGGTCTGGTGTGCAATACCTGCCAGAAGGATCTCACAGAGCCAGAGTTTGTGTGTAGTCTTAGGGGTGAGCTGGTTCACACTAACTGTGGAAGCTACACAGAGTAGCTTccacaaatccaatgcaagtcaatggtaccTATATTAGCATTTTCTAATTTCACTTCATAATCCTCTATAAGTAACTTCATTCAGTTACACAATCCATTTTTAGATACTTTAGGATGATTTGGACATAATGCGCGGAAATGATAATAATTATAGGTACCAttgtttttttattgaacctttatttaactaggcaagtcagttaagaataaatccttatttacaatgacggcctaccttgGAACAatgggtaaactgccttgttcaggggcagaacgacagatttttaccttgtcaccaCGGGGATTACgatccagcaacttttcggttactggcccaacagtctgaccactaggctacctgccgccccaaatccAATTATTTGCATTGAATTTGTGCCACAATTGCTAAAAAgttagcatttgaaacagtggTCAGGGAAACAAagccaaagcatggattgctgtcataccttgttgatagactgcttacagggaaAAAACTAATATGCCATTTTGCAATTAggatgaactatccctttaaggcaGCAACATTCGACAGCCGTGCAAGGGGTGTGACGAATTCCACTAGGCACTGTGTCTGCTTCTTACCCAATCATTAGTTTCACGTTTTATGGGGAATTTGCAATCTTACTGGTCCAAACACATTGAGttatactaaacattaggaacacctcctaatattgagttgcattcccttttgccctcagaacagcctcaatttgtcagggcatggactctactaggtgtcgaaagccttccacaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584358.2 True 3504 mRNA 0.47 12 5541247 5549412

Neighbor

gene id symbol gene type direction distance location
LOC110505253 LOC106610592 coding upstream 29180 5493396 ~ 5512067 (+)
LOC110504174 LOC106561892 coding upstream 50917 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 70462 5416814 ~ 5470785 (+)
LOC110505250 LOC106610594 coding upstream 137064 5385664 ~ 5404183 (+)
LOC110505249 LOC106610595 coding upstream 353187 4890876 ~ 5188060 (+)
col10a1a LOC106610590 coding downstream 27783 5577195 ~ 5583625 (+)
LOC110505255 LOC106610589 coding downstream 65657 5615069 ~ 5693032 (+)
LOC110505259 LOC106610586 coding downstream 206146 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 263092 5812504 ~ 5824543 (+)
iqcc NA coding downstream 284722 5834134 ~ 5839930 (+)
G1943505 NA non-coding upstream 18604 5522415 ~ 5522643 (+)
G1943502 NA non-coding upstream 21387 5519561 ~ 5519860 (+)
G1943501 NA non-coding upstream 32437 5508474 ~ 5508810 (+)
G1943497 NA non-coding upstream 42041 5498977 ~ 5499206 (+)
G1943496 NA non-coding upstream 42638 5498379 ~ 5498609 (+)
G1943563 NA non-coding downstream 70223 5619635 ~ 5619930 (+)
G1943567 NA non-coding downstream 77505 5626917 ~ 5627210 (+)
G1943607 NA non-coding downstream 126410 5675822 ~ 5676256 (+)
G1943610 NA non-coding downstream 130750 5680162 ~ 5680449 (+)
G1940966 NA other upstream 1801457 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3735210 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4572184 963874 ~ 969082 (+)
G1937035 NA other upstream 4885330 655528 ~ 655917 (+)
G1943555 NA other downstream 149606 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 916377 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1394799 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 1974469 7523775 ~ 7605647 (+)

Expression


Co-expression Network