LOC110505260 (LOC106613993)


Basic Information

Item Value
gene id LOC110505260
gene name LOC106613993
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5812504 ~ 5824543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584386.2
CCACTATCTATAAACGTCAAGATAGGTTCACCAGCCTATGGAAAGCAGCGCATTATGACAGGCAAGGTATTTGTCTTGCAGTCTTCGACGATTAATAACTTCAGTAGAATAAGTTTGAAATGGTTTCTGTAAATATAATATAGGTTGCACAGCTGTGTAAATTCGGATTGTGACTGGAACGAGCTCGGATTTACCACCAAAAGCTGTCTTTCTTTAgacccaacagtacacatttgcTTTGAAATAcgtttaagttttttttttccaAGAGTGGAGAATGCATCCTGGCAATTGTCGAATGAATGGAGGTGGTGGACTCGATGGTAGAGACGAATCCGTATTTGGGACGATCACGCTAGAGGATCTGGAATCTTTTTCGGAAGACCAGCTGTCAGATTCGGGCAATGGAAGTCTGGAAGAGGAGAGTGAGACGATGGAGGACGAAGGGCAGCAAGACCGATTGCTGCGCTACTGGCAGGACGCTGCTCGAGGACACCAAGTCGAAGTGCCTCGAGACATGGCCGATCCCATCCAGCAGATCACCAGCAACAACAACGGACAACACGACCGGGAGCGCGTGCCCTTCACCCTCATCACTCATAAGGAGAAGTGTGGGGACGTGCTTTATGAGAAACGCCACTATGAGAAGGCCCACTGGGCGTGCATCACGGTTCACGAGGACACCTACGAGCAGAGCATCTGTTACGGTTTCATGAAGCTCATGAGATACATCTGCCAGCAAAACTCCTCAGGTACCTATCTGGGTATGACCATCCCTATCCTGACGGTGATCCGCACGGACGAGAACCACTCGGTCTTGTCCAGTGACGTCACTGTGGCCTACTACCTGCCCACAGAATACCAAGCCCAGCCACCCCAGCCTTCTGACACTGAAATAAGCATTGAGGAATGGCCTGCCACTACTGTATACACAAGGGCCTTCGCTGGTGCTACGAACGAGGTGACCATCATCAACGAGATCCGCACCATGGCGGAAGTGCTCGACTCCCCCGCCATATGCGTGAATGACTCATTCATTGTCGCCGGCTACACAAACCCCGCGGCGGTAAACCGACAGAACGAGATTTGGTTCCTGGAGCAGCCTTGAGGGCCAGCCTGACCTTGACCTCTCCTCCTGAACTTGACCCACCCAACACCCCGTCCTTATCTGACACTACCGATTCACCCCTAATGGAAACCCCTTCCCATTTTAGAAAGAGAAGAGACTTTGGGACTTTGCTGAAAAAGGTCCTTATTACCAGTTCTGAGCAAGGCTGCATCATTTGGGTCCATTAATCCTCTAGAGTCTAAACCTGGAAGGGGGTGGGGTTCTActaagctgacatatggaattgttttaagatggtcatacaaAGGATCACTTAGATATTCGATTTTAGGACCCAAAAATATAcaattatttgatgaaacattgaatttggccttactgctattagcccataaaCACACTGAATTACAGATTCATACAGGGAAAAACATCTACTGGAagtttgttttgaagtgtcttATATCTGAGAGATGAGATCTGgaaactagaggtcaaccgattatgatttttcaacgccgataccgatttttggaggacaaaaaaaaaacgatttaatcggacgatttttaaaatgtatttgtaataatgacaattacaacaatactga
>TU2223218
ACCAGCCTATGGAAAGCAGCGCATTATGACAGGCAAGGTATTTGTCTTGCAGTCTTCGACGATTAATAACTTCAGTAGAATAAGTTTGAAATGGTTTCTGTAAATATAATATAGGTTGCACAGCTGTGTAAATTCGGATTGTGACTGGAACGAGCTCGGATTTACCACCAAAAGCTGTCTTTCTTTAgacccaacagtacacatttgcTTTGAAATAcgtttaagttttttttttccaAGAGTGGAGAATGCATCCTGGCAATTGTCGAATGAATGGAGGTGGTGGACTCGATGGTAGAGACGAATCCGTATTTGGGACGATCACGCTAGAGGATCTGGAATCTTTTTCGGAAGACCAGCTGTCAGATTCGGGCAATGGAAGTCTGGAAGAGGAGAGTGAGACGATGGAGGACGAAGGGCAGCAAGACCGATTGCTGCGCTACTGGCAGGACGCTGCTCGAGGACACCAAGTCGAAGTGCCTCGAGTGTGGGGACGTGCTTTATGAGAAACGCCACTATGAGAAGGCCCACTGGGCGTGCATCACGGTTCACGAGGACACCTACGAGCAGAGCATCTGTTACGGTTTCATGAAGCTCATGAGATACATCTGCCAGCAAAACTCCTCAGGGCCTTCGCTGGTGCTACGAACGAGGTGACCATCATCAACGAGATCCGCACCATGGCGGAAGTGCTCGACTCCCCCGCCATATGCGTGAATGACTCATTCATTGTCGCCGGCTACACAAACCCCGCGGCGGTAAACCGACAGAACGAGATTTGGTTCCTGGAGCAGCCTTGAGGGCCAGCCTGACCTTGACCTCTCCTCCTGAACTTGACCCACCCAACACCCCGTCCTTATCTGACACTACCGATTCACCCCTAATGGAAACCCCTTCCCATTTTAGAAAGAGAAGAGACTTTGGGACTTTGCTGAAAAAGGTCCTTATTACCAGTTCTGAGCAAGGCTGCATCATTTGGGTCCATTAATCCTCTAGAGTCTAAACCTGGAAGGGGGTGGGGTTCTActaagctgacatatggaattgttttaagatggtcatacaaAGGATCACTTAGATATTCGATTTTAGGACCCAAAAATATAcaattatttgatgaaacattgaatttggccttactgctatta

Function

NR:

description
heme-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584386.2 False 1676 mRNA 0.47 5 5812504 5824543
TU2223218 True 1148 TUCP 0.47 3 5812533 5824323

Neighbor

gene id symbol gene type direction distance location
LOC110505259 LOC106610586 coding upstream 46374 5755558 ~ 5766130 (+)
LOC110505255 LOC106610589 coding upstream 120164 5615069 ~ 5693032 (+)
col10a1a LOC106610590 coding upstream 228879 5577195 ~ 5583625 (+)
si:ch211-266g18.9 LOC106610591 coding upstream 263092 5541247 ~ 5549412 (+)
LOC110505253 LOC106610592 coding upstream 300437 5493396 ~ 5512067 (+)
iqcc NA coding downstream 9591 5834134 ~ 5839930 (+)
LOC118944375 NA coding downstream 160145 5984688 ~ 5992380 (+)
grhl3 LOC106610656 coding downstream 198100 6022643 ~ 6038606 (+)
si:dkey-221l4.11 LOC106610645 coding downstream 234134 6039841 ~ 6060719 (+)
rps6ka1 LOC106610660 coding downstream 399613 6224156 ~ 6338282 (+)
G1943683 NA non-coding upstream 4666 5807210 ~ 5807838 (+)
G1943682 NA non-coding upstream 5584 5806670 ~ 5806920 (+)
G1943659 fancm non-coding upstream 32395 5778663 ~ 5780109 (+)
G1943651 NA non-coding upstream 57452 5754746 ~ 5755052 (+)
G1943670 NA non-coding downstream 2938 5827481 ~ 5830542 (+)
G1943696 NA non-coding downstream 29093 5853636 ~ 5854773 (+)
G1944177 NA non-coding downstream 225453 6049996 ~ 6057377 (+)
G1943555 NA other upstream 112920 5699018 ~ 5699584 (+)
LOC110505250 LOC106610594 other upstream 409722 5385664 ~ 5404183 (+)
G1940966 NA other upstream 2072714 3739538 ~ 3739790 (+)
G1938701 NA other upstream 4006467 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4843441 963874 ~ 969082 (+)
G1944456 LOC106598199 other downstream 641246 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1119668 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 1699338 7523775 ~ 7605647 (+)
G1946485 NA other downstream 2193895 8018438 ~ 8019290 (+)
LOC110505296 LOC106610680 other downstream 2205633 8029930 ~ 8116516 (+)

Expression


Co-expression Network