LOC110505318


Basic Information

Item Value
gene id LOC110505318
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 10073902 ~ 10079219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470729.2
CTGACCTAGTTTATACCAGGTGATTACATTTCTAGGTTACTTTCAGTGGTTCATAGTAAAGGCTATAAAACCTAGCTGTGGATACAATCCACGATGATCTTGCACTGTTAATGTAGGCATATCAATAAACCAGATTACATGACAGGCCAGTGTTAAACACATTTCTAGCCTCGAACGATGATAGATCTATTTGAAAACTGCCAGGAACGGTGCAGCTGTTTAAACTTTTTTCGCAACCTTTTCTCCACGTTACGCCCTCGCAAATCGTCAAAAAACGTTCTTAATAAAGCCTGCCCGAAACACTAAGTACAAGAGTGTTGTGGTTTCAAAGCAGTGAAGAAACTAAACGTTGGAAAAGAAAAAAGAAACAGGGTAACCCAGTTCGAACGAGAGGACGTGGTGTTTGTTTATCGTAAAGGTACTGACAGGAGGCGTGACGAGGACGCTGATCCAGTGGACCTGGTGCCAGTAAGTATGGTCTTCACGGAGGCAATAAGACCGTCCAGGATAGAGAAATCCTTCGACTTCACTGCCTTTTCAATGacaacaccccatccAATGACTGTGATCTGAGGACCCTTTTTGTTTTAGCAGCGAGGGAGTAACGTGCTTGGCCCTAACTACTGCGCCAAATGTCTGGCCGTCAACCTCCCTCTCCTTATGATGTGCCAGTTGGGGTTGGTGCACTGTGCCAACTGTTGCCTGCCGTATAGCATCCTGCTGCTCCACCGACAGCGCCATGCATGCTCCAGgtgcctttaaaaaatatatgtttggtACAGACATGCCATTCCACTGAACCTGCCCCAGAGATGGTTCCTTAGTCACTGAAGATCCTCCTCTGTGGGCTCTAGGGACAGAGACTTAGTCGTCTTTCGGCCAGGTAAAGATCCTCCACTGACTGCATCTGGTTGGGCACAAGTGGCTTCCTCCACTCACATTATACAGCCGATATTGTGAACCACAAAAATAGCCAATGCAGTTGCATGGCTGCACTTAGGAGCTCCACATGTGGTAGAGAGAATCCCCTGGTCACCTATAGAGACCTGCCAAGAGGAAAGTGCTATATGCATGACTTTGAACACCTTGAAATGCATTTGTTGTAAGAAATGTGCTATATttattgaacaaaaataaaaaaaatcatacaatttcaacgattctgagttacagttcaaatataAGGAAATCATTGCAATTGAAATAGTCATTAGGCCCTTCCCACATGACTGGGAAGGGGCGCAGCcttgggtgggcctgggagggcccACCCATGGCCCTCCCACCCATGTGAGGAGattcatgggtgggcctgggagggcataggcccagccaatcagaatgagtttttccccacaaaagggcattattacagacagaaatactccccaGTATCATCAGCTGTAGAAAAGTCAGCAAATTCACATGCAATAAGTAAATGTTAATCTACTGACTGGTTTATGCTACAGAGTGGACAGTGTTGTCCCCAGTGACACCAGTTTGATTATTTGAAGCTTAATGTTTGAGATTTCATCCCAGCATTTAGAATGTGAGGTTCTGAGGCTTATAATTTTCATGTTcatggtctcagacgatcccacagatGAAGAAGCTGgaagtggaggtcctgggctgtcctggttacacatggtctgtggatgtgaggccagttggatgtactgccaaattatcttacaaagttggaggcggcttatggttttattgtccccagcacaaggtgcacctgtgtaatggtcatgccgtttaatcagcttgatatgccacacctgtcaggtggatggattatattggcaaaggaaaaatgctcaccaACATGGATGTAGACAAATTTGTACACATTTTGTGcataatggaacatttctgggatctattatttcagctcatgaaacatgggactaacactttacatgttgccttttatatttttattcagtataaagttatttgattgattgacattACAGCTGTAAAATATTTAACAAGTGCAGTTGTTCCATAAACGTTCAATTGAGAACTTGGGATTGTATCACTTGACATACCATACACTGTGAAGGATCCTATAAATCAAGACTGAATGCATGTGGCACtctgaataaataaatactgtgacTTTGAAGATTTGTCTCTGGTTATGCAACAACAATACAGGCTGGATGTTTAAAAGTCAATAATTCTGAATGTCAATAGATTATTAGATAAATTCTCATCAAATGACAACATTCTAGAATTGCATTATCACTCATCTAAGTCAGACCTGGGGAAATCTGGTTGATGATTATATAATTGATTTTCTTTCCTTGTAGAATGTTGACAGTATAGAAAACATTGTATTGCTAAGATTCTCAAActtaaacctctacaggatcagtgtCCCGACCTCGGGTCGGTTGAGCtaaagtaggctaatgtgattagcatgaggttgtaagtaacaagaacatttcccaggacataggcATATCTGAtctgggcagaaagcttaaatgattgttaatctaactgcactgtccaatttgcaGTAGCTATTTCAGTGTAGAATACCATCCTATTGTttgagtgcacaattatgaacttaaATTTatgaataaaccaattaggcacatttggccAGTCTTGATACATATTTAATAGATATGCaatagttcattggatcagtctaaaactttgcactgCTATACAGTGGCCAA
>TU2229328
CAGGTGATTACATTTCTAGGTTACTTTCAGTGGTTCATAGTAAAGGCTATAAAACCTAGCTGTGGATACAATCCACGATGATCTTGCACTGTTAATGTAGGCATATCAATAAACCAGATTACATGACAGGCCAGTGTTAAACACATTTCTAGCCTCGAACGATGATAGATCTATTTGAAAACTGCCAGGAACGGTGCAGCTGTTTAAACTTTTTTCGCAACCTTTTCTCCACGTTACGCCCTCGCAAATCGTCAAAAAACGTTCTTAATAAAGCCTGCCCGAAACACTAAGTACAAGAGTGTTGTGGTTTCAAAGCAGTGAAGAAACTAAACGTTGGAAAAGAAAAAAGAAACAGGGTAACCCAGTTCGAACGAGAGGACGTGGTGTTTGTTTATCGTAAAGGTAAGATGCAAACTGGGTTTTTGTGATTAGAAATCGTGTTACCTTGCCTCTGCATTTGGTGTTTTTGTCGTGACCAACAACAGTGGCATCGGGATTCGCCTTCAAAATAAATCACCCATTAACTTGCAAACGGATTTTTAAAAAACTAATTGGAATTATGCCACACTTGTTCTAAACAAGGTTGTAATGTTATACACATTCAGCCTACTCGGGAACACAATGAAGTTTACACATGTTCGCGTTGTAGCTCTTATTGTACTACTTAAACTATGGACAATCACCTCACTATTCAGCCTATTGTACTTGTTGAACATTCATATTGCTATTGTATATTACCCCCATTTCATGGACTCAAGATCAATGGGTATCAGCTTACTTTCAATTTCATGGACCCAATATCCGTAGGTAAGGTAGTTGAGCGTTCAGCCCGTTCTCTTGAGGTGGAGTTTGAGTTTTGATTGCTGGTCGCGGAATTTGGTAGCAACAACATTGAGTCTCTGTCAGTCGATTCTTGTAAAAGTGTCAATTCTGAAAACGCTTACCTGTACAACTGCGGTTTTTCCGCGGGGTGCTgaaattcattttttttgttaaaaGGATACAACCTCCCTCTCGTTTGTGTGGCACAAATCCGCACGCATGTGCCAATTGAATCTCAGTTTACGTAGTACGACCGACACGAGGAAGAAGTCAGTGGTTTTATTTGATAAAAGTTTAAAGTATGAATTTTCAGGACTGCAGTTGTAAAGGGTAAACCGGTAATGTAGGCGTTTTCAGAATTGACTGAAGGTGACTGTTGTTGCTAGTAAATCCCGCGACCGGTTATCCAAACTCAACTATAACTCAACTATAGGCAAGGCTGTACATTTCAAGATGAATGTtaaatacacacaataggctgaaCAGTTAGGTGATTTCCAACAGTTGAAGTCCCGCAATAAGAGAGACGAAAATATTTGTAACCTGTGGGTGACGCTGAGTAGGCCGGACCCAAGATCCAGACAGAGGTAAGGCTGTACAATGCATATAAGACCTATGTCCCAATTCAATTATGACGTCTAATACATCCTCAGTGCGATGTCAACTCATTATACTTTATCTATGTCAAATTAACGGCATTTTGTTGAATTTATACAACATTAAAAACTTGTTTAGCATTAACTAGTCCAATTGGCACGATTCCATTATTTGCATCAGTTTCAatgggggacttttattttgaacgCTAACCGCCGATTCCAATTTTGCCAATgccatctatatatttatatgtacatattcttattcattcctttacacttgtgtgtataaggtagttgttgtgaaattgttagatattactgcatgatcggaactagaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgaccaatacgatttgatCCTCACACTGATGTTGTTCATGACACAGTGGTCAGTATTTGGCACTTCTTCCGCGCGTGTAAAGgtgtccgcatgcttcccagtcgAAACAGTTCGTGCATATATTATGTTTGTGGACCTCGTTGAGGGTTTATGGAGACAAGCCGAAGTTCGGAGCCGAAGTCTACTGATCATTTTCCATCAAtggatgtttttttatttatccgttattttacaagataagttgactgagaacacgttctcatttacagcaacggtgtggggaatagttacaggggagagggggatgaatgagccaattgtaaactggcgattattaggtgaccatgatggtttgagggccagattgggaatttagccaggacactggggttaacacccctacaataagtgccatgggatctttaatgaccgcagagggtcaggacacctgtttaaagtcccatccgaaagacggcaccctacacagggcagtgtccccaatcgctgccttgggatatttttttagaccagaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatccagggactgaccaggaccaaccctgcttagcttcagaagcaagtggccccaccaccaagcaagtggccccaccaccaagcaagtggccccaccaccaagcaagtggcaccaccaccaagcaagtggcactatGAAGActaaggagctctccaaacagGTACTGACAGGAGGCGTGACGAGGACGCTGATCCAGTGGACCTGGTGCCAGTAAGTATGGTCTTCACGGAGGCAATAAGACCGTCCAGGATAGAGAAATCCTTCGACTTCACTGCCTTTTCAATGGTAAGGTCCCTTGCACCATAGGGACACTTGACCTCCACCACTGCTGTGGTGCCCTCCAGACCATCTGGTGAGGCACTCAGGATCCCAGACCCCATGACCCAAAGCCCTGACTCCTGCACATCCATCCCTGTAGCCATTTTGAATGCCTTGATGTCCTCCTCTTTGTTATCTGTGCCCTACtttacagacaacaccccatccAATGACTGTGATCTGAGGACCCTTTTTGTTTTAGCAGCGAGGGAGTAACGTGCTTGGCCCTAACTACTGCGCCAAATGTCTGGCCGTCAACCTCCCTCTCCTTATGATGTGCCAGTTGGGGTTGGTGCACTGTGCCAACTGTTGCCTGCCGTATAGCATCCTGCTGCTCCACCGACAGCGCCATGCATGCTCCAGgtgcctttaaaaaatatatgtttggtACAGACATGCCATTCCACTGAACCTGCCCCAGAGATGGTTCCTTAGTCACTGAAGATCCTCCTCTGTGGGCTCTAGGGACAGAGACTTAGTCGTCTTTCGGCCAGGTAAAGATCCTCCACTGACTGCATCTGGTTGGGCACAAGTGGCTTCCTCCACTCACATTATACAGCCGATATTGTGAACCACAAAAATAGCCAATGCAGTTGCATGGCTGCACTTAGGAGCTCCACATGTGGTAGAGAGAATCCCCTGGTCACCTATAGAGACCTGCCAAGAGGAAAGTGCTATATGCATGACTTTGAACACCTTGAAATGCATTTGTTGTAAGAAATGTGCTATATttattgaacaaaaataaaaaaaatcatacaatttcaacgattctgagttacagttcaaatataAGGAAATCATTGCAATTGAAATAGTCATTAGGCCCTTCCCACATGACTGGAGattcatgggtgggcctgggagggcataggcccagccaatcagaatgagtttttccccacaaaagggcattattacagacagaaatactccccaGTATCATCAGCTGTAGAAAAGTCAGCAAATTCACATGCAATAAGTAAATGTTAATCTACTGACTGGTTTATGCTACAGAGTGGACAGTGTTGTCCCCAGTGACACCAGTTTGATTATTTGAAGCTTAATGTTTGAGATTTCATCCCAGCATTTAGAATGTGAGGTTCTGAGGCTTATAATTTTCATGTTcatggtctcagacgatcccacagatGAAGAAGCTGgaagtggaggtcctgggctgtcctggttacacatggtctgtggatgtgaggccagttggatgtactgccaaattatcttacaaagttggaggcggcttatggttttattgtccccagcacaaggtgcacctgtgtaatggtcatgccgtttaatcagcttgatatgccacacctgtcaggtggatggattatattggcaaaggaaaaatgctcaccaACATGGATGTAGACAAATTTGTACACATTTTGTGcataatggaacatttctgggatctattatttcagctcatgaaacatgggactaacactttacatgttgccttttatatttttattcagtataaagttatttgattgattgacattACAGCTGTAAAATATTTAACAAGTGCAGTTGTTCCATAAACGTTCAATTGAGAACTTGGGATTGTATCACTTGACATACCATACACTGTGAAGGATCCTATAAATCAAGACTGAATGCATGTGGCACtctgaataaataaat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106562934

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470729.2 False 2708 mRNA 0.42 3 10073902 10079219
TU2229328 True 4384 lncRNA 0.43 4 10074487 10079203
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Neighbor

gene id symbol gene type direction distance location
kidins220a LOC106610701 coding downstream 706 9969792 ~ 10073196 (-)
cmpk2 cmpk2 coding downstream 486046 9575380 ~ 9587856 (-)
LOC110505312 LOC106610694 coding downstream 1490904 8576560 ~ 8582998 (-)
LOC110505310 LOC106610693 coding downstream 1499043 8475934 ~ 8574859 (-)
LOC110504182 LOC106610648 coding downstream 1758203 8314514 ~ 8315699 (-)
mboat2a LOC106566507 coding upstream 2435 10081654 ~ 10221904 (-)
itgb1bp1 itgb1bp1 coding upstream 262304 10341523 ~ 10354208 (-)
adam17a LOC106610723 coding upstream 280396 10359615 ~ 10383848 (-)
LOC100136195 LOC100136195 coding upstream 307552 10386771 ~ 10398050 (-)
LOC110505327 LOC106610719 coding upstream 500655 10579874 ~ 10607038 (-)
G1949406 NA non-coding downstream 87546 9979698 ~ 9986356 (-)
G1949401 NA non-coding downstream 107769 9965711 ~ 9966133 (-)
G1949398 NA non-coding downstream 111214 9962414 ~ 9962688 (-)
G1949396 NA non-coding downstream 113998 9959692 ~ 9959904 (-)
G1949393 NA non-coding downstream 117333 9955746 ~ 9956569 (-)
G1949462 NA non-coding upstream 7141 10086360 ~ 10086806 (-)
G1949484 NA non-coding upstream 68587 10147806 ~ 10163760 (-)
G1949450 NA non-coding upstream 91960 10171179 ~ 10176067 (-)
G1949587 asap2 non-coding upstream 237447 10316666 ~ 10326016 (-)
G1949594 NA non-coding upstream 251248 10330467 ~ 10331732 (-)
G1949387 NA other downstream 124542 9948906 ~ 9949360 (-)
G1945534 NA other downstream 3151538 6921985 ~ 6922364 (-)
G1945526 LOC100136012 other downstream 3158675 6914595 ~ 6915227 (-)
G1945488 NA other downstream 3209258 6863805 ~ 6864644 (-)
fancm fancm other downstream 4295133 5765698 ~ 5833986 (-)
G1950222 LOC106610714 other upstream 671900 10751119 ~ 10752009 (-)
LOC110505329 LOC106610716 other upstream 697365 10769777 ~ 10799354 (-)
G1950292 NA other upstream 805644 10884863 ~ 10885108 (-)
LOC118944219 vps4a other upstream 1317849 11397068 ~ 11481374 (-)
LOC110505340 LOC106588272 other upstream 1328119 11394818 ~ 11410200 (-)

Expression

LOC110505318 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110505318 Expression in each Bioproject

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LOC110505318 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network