LOC110505337 (scpdh)


Basic Information

Item Value
gene id LOC110505337
gene name scpdh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 11267373 ~ 11295380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584516.2
AACCAACGTAAATTAAACGCTTTGTTTGTGCATGCAGACCATTTGCATCAGCGGTGTTTAGGTTTCATATCTTTATCAGTGCGGTCAAAGTCCGGCGACCGAGCATCATCATCAGACTACGGAAGTGACAGCTTTGCTATCTGTCATTTATATTAGCACGCTCCTTGCATTTCGCTCATTCCCATACCCTCTCGCGTCTTTGCGTTTCCCTGAGTATAACTAGTTGTAACTATGGCGAATGTGGATATCTCCTCTAGCAGACCCTATCACATTGTTATTTTTGGTGCTTCGGGTTTCACCGGGCAGTTTGTGGTTGAAGAGGTGGCCAGGACCGTATCGGAGGGGCCGAATGGGACGCTGAAATGGGCTGTGGCTGGGAGAAGCAGACAGAAACTGGACAAAGTTATAGAGCAGGCCGCCGGAACCCTTGGTAAGCCGGAGCTGAGGACTGCAGTGGAGGTCATCGTGGCTGATGTGGGAGAGCCTGACTCTCTGGCTGCCATGTGCAAACAGGCTGTCATTGTTCTCAACTGTGTGGGGCCAtacAGGTTCTGGGGCGAGCCTGTGGTAAAGGCATGCGTGGAAAATGGGGCACACTGCATTGACATCTGTGGAGAACCCCAGTTCCTAGAGAGTATCCAGTTGAACTACGACAGTCAGGCAGCTGATAAAGGAGTGTACATTGTGGGGGCTTGTGGCTTCGACTCCATACCTGCAGACATGGGAGTCCTCTACACCAGGGACCAGTTcaaagGGACACTCACTGCTCTAGAGAGCTTCCTGACAGCCAGCACAGGACCCGAGGGTGGTTCTCTCAATGACGGGACATGGAAGTCGGCCATCTATGGTTTAGCTGACAGCGGGAAGCTGCGGAGCCTCaggaagaagtttggacacaAACCTCTCCCTGTGGTGGGCTCAAAGATCAAACGCAGgagtgccCTGTTCTACAGCAatgaggttcagcagtatgtagTTCCGTTCATGGGAACCGACCCCTCGGTGGTGAAGAGAACTCAACGCTTTCTGCTGGAGGAACACCAGGAAACACCTGTCCAGTATGGTGCGTATGCAGGAGTAGGAGGTGTGGCCAACATTGTCAAGATGCTATTCGCTGGGATAATGTTCTGGTTCCTGGTCAAATTCAGCTTTGGACGAGACCTGTTGATTAAGTATCCAGAGTTTTTCTCCTTTGGTTTCTTCTCCAAGGATGGACCGACAAGAAAGCAGATGGAGGGTTCGTCCTTCAAGTTTGCCTTCTACGGAGAAGGTTACACTGAGGGACAGGACCCCAGCCAGGGACGACCCAATGCTAAGATCCGCACACTAGTCCAAGGACCAGAGGTGGGCTACGTAGCCACGCCCATCGCCGTGGTACAGGCCGCTATCACCATCCTGAACGAGCCCACAGCCCTCCCCAAGAAGGGAGGTGTGTACACCCCAGGAGCAACCTTTGCCAAAACTAGGTTGGTGGAGCGTCTCAACAAGCATGGCATCCAGTTCTCTGTCATCTAATGTGTGACCCCTGACCCCCATGTCATCAGCACTAGATGGTCATGCTGCAAAGTGAAACTTGACTAGCGGCAACTTTGCAACATGGCCCAATAATGAAGACCTTCTGCTTGTCTGTGACTAGTTTTTAAAGAGACAGTTTCCTTGTCAAATAATGGTGCCCCCACTTTAACTCGCCAACGATTGTGCAGTTTGTCATGACTCAGTAGATTAATGCCTGTGAGTGCCTGTTTCTCTCAAAAAAGCTTGACTGCATTATGATGCTTCTGTCCTTCCTCTGATCAATACTTTCCAAGCACTGTCTGAAACCTACCTTACTTCAAGAGGATCAGAAATTCCTCATTTGAACGATTGTGTGCTGTAATCAAATATAGTTTAGCAGGATCTGTTTAAGGAATGATCAACAAAGTAGTGCTTGCTGCTTGTTAAATGGTTGTTTGGGTACTACATACACACAAAGCTGGGATGATCCTTCCCACAACTTTGCAGAGTCTTCTGTGATTCACTGAGCGTGTGTTGTACAGGTTCTGTTCTCCTAGGGCTGTAGGTCTTCTCTACTTGTCTGAATAAAACCCAACACTACTGAAATAAA

Function

NR:

description
saccharopine dehydrogenase-like oxidoreductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584516.2 True 2104 mRNA 0.49 12 11267373 11295380

Neighbor

gene id symbol gene type direction distance location
LOC110505332 LOC106610711 coding upstream 254621 10844977 ~ 11012752 (+)
LOC110505330 LOC106610717 coding upstream 452833 10809234 ~ 10814564 (+)
LOC110505328 LOC106610714 coding upstream 502294 10676596 ~ 10765079 (+)
LOC118944186 NA coding upstream 598452 10605953 ~ 10668921 (+)
LOC110504187 LOC106610718 coding upstream 689082 10551895 ~ 10578291 (+)
LOC110505350 LOC106610733 coding downstream 208070 11503450 ~ 11532700 (+)
kif28 kif28p coding downstream 240718 11536098 ~ 11551835 (+)
LOC110505357 NA coding downstream 660866 11956246 ~ 11959538 (+)
esrrga LOC106570958 coding downstream 839530 12134910 ~ 12240158 (+)
LOC110505364 LOC106610747 coding downstream 1344302 12639682 ~ 12647343 (+)
G1950117 NA non-coding upstream 48255 11215372 ~ 11219118 (+)
G1950070 NA non-coding upstream 95468 11149994 ~ 11171905 (+)
G1950044 NA non-coding upstream 156295 11110546 ~ 11111078 (+)
G1950013 NA non-coding upstream 211812 11050188 ~ 11055561 (+)
G1949987 NA non-coding upstream 260242 11006906 ~ 11007131 (+)
G1950570 NA non-coding downstream 19692 11315072 ~ 11315642 (+)
G1950571 NA non-coding downstream 20334 11315714 ~ 11316210 (+)
G1950573 NA non-coding downstream 21056 11316436 ~ 11331260 (+)
G1950613 NA non-coding downstream 184828 11480208 ~ 11498275 (+)
G1949039 1433b other upstream 878660 10386771 ~ 10462100 (+)
G1949170 NA other upstream 894684 10371653 ~ 10372689 (+)
G1949041 LOC106610723 other upstream 906217 10357613 ~ 10361156 (+)
asap2a LOC106566627 other upstream 925440 10246155 ~ 10341934 (+)
G1950642 LOC106610734 other downstream 259145 11554525 ~ 11557908 (+)
LOC118944376 NA other downstream 1792356 13087702 ~ 13089271 (+)
LOC110505390 LOC106610772 other downstream 2553218 13848535 ~ 13860898 (+)
G1953696 NA other downstream 3058445 14353825 ~ 14354124 (+)
tfb1m LOC106610789 other downstream 3686397 14947569 ~ 14994632 (+)

Expression

LOC110505337(scpdh) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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LOC110505337(scpdh) Expression in each Bioproject

Bar chart with 21 bars.
LOC110505337(scpdh) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10000.
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Co-expression Network