Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118944219 |
| gene name | vps4a |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 11397068 ~ 11481374 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| vps4a | Predicted to enable ATP hydrolysis activity. Predicted to be involved in endosomal transport and vacuole organization. Predicted to act upstream of or within cell division. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Orthologous to human VPS4A (vacuolar protein sorting 4 homolog A). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036962545.1 | False | 2522 | mRNA | 0.51 | 7 | 11411524 | 11425956 |
| TU2230800 | False | 925 | TUCP | 0.48 | 4 | 11397068 | 11412771 |
| TU2230801 | False | 768 | TUCP | 0.48 | 2 | 11397068 | 11397995 |
| TU2230802 | True | 1094 | lncRNA | 0.45 | 3 | 11397068 | 11481374 |
11,330,000
11,340,000
11,350,000
11,360,000
11,370,000
11,380,000
11,390,000
11,400,000
11,410,000
11,420,000
11,420,000
11,430,000
11,440,000
11,450,000
11,460,000
11,470,000
11,480,000
11,490,000
11,500,000
NC_048589.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505340 | LOC106588272 | coding | downstream | 1324 | 11394818 ~ 11410200 (-) |
| LOC118944220 | NA | coding | downstream | 16971 | 11391155 ~ 11394711 (-) |
| LOC118944217 | LOC106588272 | coding | downstream | 21057 | 11367755 ~ 11390467 (-) |
| LOC110505341 | LOC106588272 | coding | downstream | 44270 | 11346328 ~ 11367254 (-) |
| LOC118936593 | LOC106568776 | coding | downstream | 66525 | 11328084 ~ 11344999 (-) |
| LOC118944216 | LOC106568776 | coding | upstream | 932 | 11426888 ~ 11455371 (-) |
| LOC110505352 | LOC106588272 | coding | upstream | 30411 | 11456367 ~ 11473970 (-) |
| LOC118944221 | NA | coding | upstream | 51739 | 11477695 ~ 11492187 (-) |
| LOC118944137 | NA | coding | upstream | 65769 | 11491725 ~ 11496316 (-) |
| LOC110505353 | vps4a | coding | upstream | 71728 | 11480205 ~ 11504464 (-) |
| G1950721 | NA | non-coding | downstream | 32750 | 11358739 ~ 11378774 (-) |
| G1950722 | NA | non-coding | downstream | 43087 | 11359664 ~ 11368437 (-) |
| G1950770 | NA | non-coding | upstream | 95308 | 11521264 ~ 11532748 (-) |
| G1950787 | NA | non-coding | upstream | 125496 | 11551452 ~ 11551682 (-) |
| G1950292 | NA | other | downstream | 526416 | 10884863 ~ 10885108 (-) |
| LOC110505329 | LOC106610716 | other | downstream | 612279 | 10769777 ~ 10799354 (-) |
| G1950222 | LOC106610714 | other | downstream | 659515 | 10751119 ~ 10752009 (-) |
| G1949387 | NA | other | downstream | 1462164 | 9948906 ~ 9949360 (-) |
| LOC110505361 | LOC106610752 | other | upstream | 1318450 | 12744406 ~ 12755099 (-) |
| LOC110505391 | LOC106574021 | other | upstream | 2657515 | 14083317 ~ 14105695 (-) |
| G1954080 | LOC106610776 | other | upstream | 2969351 | 14395307 ~ 14395691 (-) |
| G1954972 | NA | other | upstream | 3939346 | 15365302 ~ 15387650 (-) |
| LOC118936486 | LOC106588272 | coding | downstream | 71861 | 11314041 ~ 11325207 (-) |
| lpin1 | LOC106610734 | coding | upstream | 73118 | 11554492 ~ 11605144 (-) |
| greb1 | LOC106610731 | coding | upstream | 129911 | 11611285 ~ 11677159 (-) |
| spata17 | spata17 | coding | upstream | 367993 | 11849367 ~ 11913827 (-) |
| G1950788 | NA | non-coding | upstream | 70330 | 11551704 ~ 11551934 (-) |
| G1950814 | NA | non-coding | upstream | 169785 | 11651159 ~ 11651468 (-) |
| G1945534 | NA | other | downstream | 4474704 | 6921985 ~ 6922364 (-) |
| G1955863 | NA | other | upstream | 4456485 | 15937859 ~ 15940045 (-) |
| G1950707 | NA | non-coding | upstream | 1380 | 11414151 ~ 11431009 (-) |
