Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110505414 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 15346706 ~ 15366123 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC109526083 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002470756.2 | False | 1132 | mRNA | 0.48 | 3 | 15346706 | 15366090 |
| XR_002470755.2 | False | 1119 | mRNA | 0.48 | 3 | 15346716 | 15366090 |
| TU2234978 | False | 1116 | lncRNA | 0.48 | 3 | 15346752 | 15366123 |
| TU2234979 | True | 1119 | lncRNA | 0.48 | 3 | 15346752 | 15366123 |
15,336,000
15,340,000
15,344,000
15,348,000
15,352,000
15,356,000
15,360,000
15,364,000
15,368,000
15,372,000
15,376,000
NC_048589.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| foxa2 | foxa2 | coding | upstream | 2350 | 15341610 ~ 15344356 (+) |
| prkd3 | LOC106610794 | coding | upstream | 27955 | 15258076 ~ 15318751 (+) |
| mocs3 | NA | coding | upstream | 90409 | 15242601 ~ 15256297 (+) |
| tfb1m | LOC106610789 | coding | upstream | 352108 | 14947569 ~ 14994632 (+) |
| LOC110505401 | LOC106610783 | coding | upstream | 805229 | 14536977 ~ 14541477 (+) |
| LOC110505417 | NA | coding | downstream | 169298 | 15534879 ~ 15543812 (+) |
| nkx2.2a | nkx2-2 | coding | downstream | 220870 | 15586960 ~ 15604480 (+) |
| nkx2.4a | nkx2.1a | coding | downstream | 277206 | 15643296 ~ 15648617 (+) |
| ralgapa2 | ralgapa2 | coding | downstream | 487783 | 15853873 ~ 16017012 (+) |
| LOC110505424 | LOC106610806 | coding | downstream | 693347 | 16059437 ~ 16064685 (+) |
| G1954637 | NA | non-coding | upstream | 24427 | 15321010 ~ 15322279 (+) |
| G1954591 | NA | non-coding | upstream | 178401 | 15168044 ~ 15168305 (+) |
| G1954589 | NA | non-coding | upstream | 181062 | 15165410 ~ 15165644 (+) |
| G1954588 | NA | non-coding | upstream | 182456 | 15163858 ~ 15164250 (+) |
| G1954585 | LOC106610793 | non-coding | upstream | 187153 | 15157750 ~ 15159553 (+) |
| G1954731 | NA | non-coding | downstream | 61413 | 15427503 ~ 15428246 (+) |
| G1955047 | NA | non-coding | downstream | 102154 | 15468244 ~ 15468613 (+) |
| G1955099 | NA | non-coding | downstream | 146109 | 15512199 ~ 15512421 (+) |
| G1955129 | NA | non-coding | downstream | 160788 | 15526878 ~ 15527080 (+) |
| G1954503 | NA | other | upstream | 307170 | 15038146 ~ 15039536 (+) |
| G1953696 | NA | other | upstream | 992582 | 14353825 ~ 14354124 (+) |
| LOC110505390 | LOC106610772 | other | upstream | 1485808 | 13848535 ~ 13860898 (+) |
| LOC118944376 | NA | other | upstream | 2257440 | 13087702 ~ 13089271 (+) |
| LOC110504323 | LOC106610912 | other | downstream | 1151550 | 16517639 ~ 16521087 (+) |
| G1956418 | NA | other | downstream | 1524640 | 16890730 ~ 16891472 (+) |
| G1956836 | NA | other | downstream | 1720846 | 17086936 ~ 17087404 (+) |
| LOC110504198 | mthfd1 | other | downstream | 1988272 | 17349032 ~ 17366266 (+) |
