LOC110505524 (LOC106611070)


Basic Information

Item Value
gene id LOC110505524
gene name LOC106611070
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 19412027 ~ 19421296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584797.2
CATCAAACACCCTTCATTAAGAAACAGTCTGCTTTGTGACTGATGTACTGCCACATTTTCACAACAATATTGGCGCCACCAGAAGCGTGTTTCTGTATAAGCAAAGCGCAAGAGTTGCATCAACACGCCAAGAGAAAGCACTTTTTCAGCAGGATCATGATGGAAGGTCATGGTAAAGACAGAAGGATGACTAAACTGTGGATATTGACGTTACTGTTATGCGTTTAACCTGCATCTCACTGTCTGGATAAAAAGGTTTCTCAACTTCTGCGCGTATTGGATTGCGGAGCTGGGTTTAGTCCAAAAGGGTTTTGAAGAAGGATTTATTCCCCTTTTCCTAATTTCATATTTCCTCATCATCCAATCACTGCTTGGAATAGCAGCTCTCTGATGAGAACAGGTTATTTTTCAAAGGATACGAACCGATCTGTGGAAAAGAATGGCAACTTGGTTTACCTTTATCATCGCAATTGTTATAACGATTTTTACGCAGGTTCTGGGATCTGGTGTATTCGAGCTTGATCTTCATCAGTTTCAGAATAATAGAAGTTTGCTGGCAAACGGCATAGCTTGCAGTCCAGCCTGTAGAACTTTTTTCCGAGTTTGCTTGAAGAACTACCAGACGATAGTGTCACCAGGTGACTGCTACTTCGGCAGTGTCGTTACACCTGTACTAGGCAACAACTCGTTCAGCGTCATGGAGGACGGCACGTTCACTAAACCTATTCGCCTGCCACTCACCCACTTTGCATGGCCGGGTTCGTTTTCTCTAATCATTGAAGCATGGTATTCTCCTTCAGCGGATCTACCTGAAGATATAAACAACCCTGCCTTATTGATTAGTTATTTTTCCATCCAAAGAAAGTTGGAAGTAGGGAATGAGTGGTCCCAGGATGTGCAGAGTGGGGGCCAGACGGAGTTAAGGTACTCATACCGGTTCATCTGCATTGAAAATTACTACGGGGACAGTTGTTCCAAAATATGTGCTCCAAGAGATGACCGCTTTGGCCACTACACCTGCAACCCTGAAGGGCAAATATCATGTCTACCGGGCTGGAAGGGAGAATACTGCGAAGAACCAATTTGCCTCAAAGGGTGCAGCAAAAACAATGGAAATTGCTCAAGGCCAGGAGACTGTGTATGCAGAGAGGGCTGGCAGGGAACCTTCTGCGATGAGTGTAAGAGACATCCGTCCTGTAAACACGGCACCTGTCAGCAGCCCTGGCAGTGCACCTGCAAAGAGGGCTGGGGAGGCCTCCTCTGTGACCAAGATCTGAACTATTGTACCCATCACAAGCCGTGTCGTAACGGGGCCACCTGTATGAACACGGGCCAGGGGAGCTACACCTGTACCTGCCAGCCGGGCTTCACAGGGGACACGTGTGACAGAGAGGTCAGGGAGTGCGACAGCCAGCCCTGTCGGAATGGAGGCCTGTGCTTGGACCTTGAGAACGGCTATAGGTGTGCATGCACGCAGGGGTACGAGGGGACGCACTGCGAGCACAGAATGCTAACTTGTGCCGATTCACCCTGCTTCCATGGGAATTGCAGAGAAAAGGACAACGGGCGGAGCTACATGTGCGAGTGCCCAGGGGGCTTCACTGGACTCAACTGTGAGAAGAAAGTGGACAAATGCACCTCCCTGCCCTGTACAAATGGTGGACGTTGTGTTATCCACGGCACCACACGCTGGTGCAGCTGCCGCTCAGGCTTCACCGGCCCACGCTGTGAGATCAACATCAACGAGTGTTCCATGAACCCCTGCGCCAACGGAGCCAGCTGCATGGACCGCATCAACGACTACACCTGTATCTGCCCCCTGGGCTACACCGGCCGCAACTGTGACAAGCCCACTGACCTCTGTGCCTCCAAACCCTGCCTGAACAGTGGGACCTGTACCGACGGGGCCAAAGGCCAGCCTGCTGCCTGCATCTGCCCAGCCCACTTCAGTGGCCCCCAGTGCCAGTACTACGATGTGCCTTTACTCATCCCCCCGAGCCCCAGCCCCAGCCGCGTCAGAGAGCCCCTGGACAGGCTCCACTGGGCAGCCATCTGTCTGGGTGTGGGCATGGTGGTGCTCCTGGTGCTGATCTGCATGGTGGCCATGGTCCTGCGCCACATCCAGcagcagaggaagaggaagaaggacTCAGAGTCCATGAACAACCTATCAGACGTCCAGAAGGAGAACCTCATATCTGACCTGCAGCTGAAGAACACCAACAAAAAGGTGGacctggaggtggaggtggattGTCTCAGGGAGAAGTCCCAAAACCATAAACACATCAACTACCACTTGGACTACAAAACCTCCAAGGAGTACAAGGATGAACCATCAGAAGAGGATAAAGATGAGAACTGTAAAAAGATGATAGAGGAGAAAATGCCATTGACTAGAAAGTACAGCGAAAGGCCAGAGTGTAGGATATCAACGATATGTTCTCCAAGAGATTCAATGTACCAGTCTGTGTTTGTGATAGCAGAGGAGAAGAATGAATGTGTCATAGCAACTGAGGTATAATACATGGATGGTATCAGACATTCTGAAGAATGGATATCTTCTGGACTGTTTACAGGTGTTGAAATAGATGGGATTTAATTTAACTGCAAATTGCTGCTCTTGAAAACTTGACAACTGGACCGATCATGTGTGCTCTATGAATGCAATAAAATGTAAGGACTGAACACACTGTAATAGAGAAATAATGTGGGCTTTTGGACATTTCACCCTCAGTGTGTACTGACAGATTCAGCCCGTTGACAGAACGTCCCACTATATCCATGGGAAACAGGCCTGCGTTAATACCAGCATGCCCATCTGCAGGATGAGAGGGCTCTGTCTGGAGATACTCCAACTTATTGTGATAATCagcaaccaaccaatcaacttACTGCCAACAAGCCTATGGAAGGAGCCAGCTACTTCCATTTCTCTACCCTGGTGAAGTGCTATATAATAAGGCAGACTTTGTTTCATAAACTTTCAAGGAGAGAATAAAAACGTCTGGAAACGGTTCATTTTATGAGAATATTTGAGACCTAAGGCCTATGTCAATTTTGTAAatgaattgttaaaaaaaaaaacaaaaaaaaaagttaataaataaataatgtatgcATCCCGAATCATAGAGCCTTAAGTATGGGTTAAAGAGCTACATTGGTGCCCAGCTTCTTCTTGGATCCAGTGCACAACAAAAAAACGAAGGGAACATTTAAGAGAAAAAAACTGATGCGATACACGATGCAGTGCCAGGGGTATTCAAGAAGAAGCTATATTTACTTGTTATTATGCAGCATTGCCCAGAAATGAAGACAAAGAAAAACAAAAGTGACTATTATACCAAGGACGCCTTTAATTAGAATTGACTTCACTGAACCAATAATGTTATTTTTAAGATTAGTATTTCACTAGTTATTTAAATATTTCGAAGCACTGGTCTTTCTATGTTTTATAAGattattttgtatataatgtatatttaTAAATGTAGAAGTCTCTGTACaactgtttttttatttgatgCCCAAAAAGTAGAATTTATTTTTTAATGTTGTTGTGattgttgttttttaaaacaatgaaaaaatatCTGGTACACTGTTGTTTGTTGGTTTCATGTTGAGTATAATTGGTCAACTATAAAGCTATAAATTTGCCTAGATATTGGAATGATCAAGAGCCTTCAGTTGAAATCCACCACCTGTTGTGGAAATGGCTTCATTGTCTAGATGATGTATGACCTTGTAGCAGTTATAACAATCGCAGTGGTGAGAGGCATGCGTGTCAATGTGATGTTAAATCAATGTGCTCACAATCATTCAGTGGACAGTTTTGTATGTGACAGCAATGTGAGAAATATGGACAAAGTTATATATTAAAACATGTCATGTTAAAGTACGGTA
>XM_036962887.1
CATCAAACACCCTTCATTAAGAAACAGTCTGCTTTGTGACTGATGTACTGCCACATTTTCACAACAATATTGGCGCCACCAGAAGCGTGTTTCTGTATAAGCAAAGCGCAAGAGTTGCATCAACACGCCAAGAGAAAGCACTTTTTCAGCAGGATCATGATGGAAGGTCATGGTAAAGACAGAAGGATGACTAAACTGTGGATATTGACGTTACTGTTATGCGTTTAACCTGCATCTCACTGTCTGGATAAAAAGGTTTCTCAACTTCTGCGCGTATTGGATTGCGGAGCTGGGTTTAGTCCAAAAGGGTTTTGAAGAAGGATTTATTCCCCTTTTCCTAATTTCATATTTCCTCATCATCCAATCACTGCTTGGAATAGCAGCTCTCTGATGAGAACAGGTTATTTTTCAAAGGATACGAACCGATCTGTGGAAAAGAATGGCAACTTGGTTTACCTTTATCATCGCAATTGTTATAACGATTTTTACGCAGGTTCTGGGATCTGGTGTATTCGAGCTTGATCTTCATCAGTTTCAGAATAATAGAAGTTTGCTGGCAAACGGCATAGCTTGCAGTCCAGCCTGTAGAACTTTTTTCCGAGTTTGCTTGAAGAACTACCAGACGATAGTGTCACCAGGTGACTGCTACTTCGGCAGTGTCGTTACACCTGTACTAGGCAACAACTCGTTCAGCGTCATGGAGGACGGCACGTTCACTAAACCTATTCGCCTGCCACTCACCCACTTTGCATGGCCGGGTTCGTTTTCTCTAATCATTGAAGCATGGTATTCTCCTTCAGCGGATCTACCTGAAGATATAAACAACCCTGCCTTATTGATTAGTTATTTTTCCATCCAAAGAAAGTTGGAAGTAGGGAATGAGTGGTCCCAGGATGTGCAGAGTGGGGGCCAGACGGAGTTAAGGTACTCATACCGGTTCATCTGCATTGAAAATTACTACGGGGACAGTTGTTCCAAAATATGTGCTCCAAGAGATGACCGCTTTGGCCACTACACCTGCAACCCTGAAGGGCAAATATCATGTCTACCGGGCTGGAAGGGAGAATACTGCGAAGAACCAATTTGCCTCAAAGGGTGCAGCAAAAACAATGGAAATTGCTCAAGGCCAGGAGACTGTGTATGCAGAGAGGGCTGGCAGGGAACCTTCTGCGATGAGTGTAAGAGACATCCGTCCTGTAAACACGGCACCTGTCAGCAGCCCTGGCAGTGCACCTGCAAAGAGGGCTGGGGAGGCCTCCTCTGTGACCAAGATCTGAACTATTGTACCCATCACAAGCCGTGTCGTAACGGGGCCACCTGTATGAACACGGGCCAGGGGAGCTACACCTGTACCTGCCAGCCGGGCTTCACAGGGGACACGTGTGACAGAGAGGTCAGGGAGTGCGACAGCCAGCCCTGTCGGAATGGAGGCCTGTGCTTGGACCTTGAGAACGGCTATAGGTGTGCATGCACGCAGGGGTACGAGGGGACGCACTGCGAGCACAGAATGCTAACTTGTGCCGATTCACCCTGCTTCCATGGGAATTGCAGAGAAAAGGACAACGGGCGGAGCTACATGTGCGAGTGCCCAGGGGGCTTCACTGGACTCAACTGTGAGAAGAAAGTGGACAAATGCACCTCCCTGCCCTGTACAAATGGTGGACGTTGTGTTATCCACGGCACCACACGCTGGTGCAGCTGCCGCTCAGGCTTCACCGGCCCACGCTGTGAGATCAACATCAACGAGTGTTCCATGAACCCCTGCGCCAACGGAGCCAGCTGCATGGACCGCATCAACGACTACACCTGTATCTGCCCCCTGGGCTACACCGGCCGCAACTGTGACAAGCCCACTGACCTCTGTGCCTCCAAACCCTGCCTGAACAGTGGGACCTGTACCGACGGGGCCAAAGGCCAGCCTGCTGCCTGCATCTGCCCAGCCCACTTCAGTGGCCCCCAGTGCCAGTACTACGATGTGCCTTTACTCATCCCCCCGAGCCCCAGCCCCAGCCGCGTCAGAGAGCCCCTGGACAGGCTCCACTGGGCAGCCATCTGTCTGGGTGTGGGCATGGTGGTGCTCCTGGTGCTGATCTGCATGGTGGCCATGGTCCTGCGCCACATCCAGcagcagaggaagaggaagaaggacTCAGAGTCCATGAACAACCTATCAGACGTCCAGAAGGAGAACCTCATATCTGACCTGCAGCTGAAGAACACCAACAAAAAGGTGGacctggaggtggaggtggattGTCTCAGGGAGAAGTCCCAAAACCATAAACACATCAACTACCACTTGGACTACAAAACCTCCAAGGAGTACAAGGATGAACCATCAGAAGAGGATAAAGATGAGAACTGTAAAAAGATGATAGAGGAGAAAATGCCATTGACTAGAAAGTACAGCGAAAGGCCAGAGTGTAGGATATCAACGATATGTTCTCCAAGAGATTCAATGTACCAGTCTGTGTTTGTGATAGCAGAGGAGAAGAATGAATGTGTCATAGCAACTGAGGTAAGCTTTTATTTTCACATTTTGTCTGAACATGTTCCTGCAACTCTTGACACCATGTCATTAACAGTCATCAATCAGCAATGCAAAAGTTGAGGTTTCCATTACATTTCTCCAATGATTCACCTGGTTTCCTTTTTTTCT
>TU2240720
GGACAGTTGTTCCAAAATATGTGCTCCAAGAGATGACCGCTTTGGCCACTACACCTGCAACCCTGAAGGGCAAATATCATGTCTACCGGGCTGGAAGGGAGAATACTGCGAAGAACCAATTTGCCTCAAAGGGTGCAGCAAAAACAATGGAAATTGCTCAAGGCCAGGAGACTGTGTATGCAGAGAGGGCTGGCAGGGAACCTTCTGCGATGAGTGTAAGAGACATCCGTCCTGTAAACACGGCACCTGTCAGCAGCCCTGGCAGTGCACCTGCAAAGAGGGCTGGGGAGGCCTCCTCTGTGACCAAGATCTGAACTATTGTACCCATCACAAGCCGTGTCGTAACGGGGCCACCTGTATGAACACGGGCCAGGGGAGCTACACCTGTACCTGCCAGCCGGGCTTCACAGGGGACACGTGTGACAGAGAGGTCAGGGAGTGCGACAGCCAGCCCTGTCGGAATGGAGGCCTGTGCTTGGACCTTGAGAACGGCTATAGGTGTGCATGCACGCAGGGGTACGAGGGGACGCACTGCGAGCACAGAATGCTAACTTGTGCCGATTCACCCTGCTTCCATGGGAATTGCAGAGAAAAGGACAACGGGCGGAGCTACATGTGCGAGTGCCCAGGGGGCTTCACTGGACTCAACTGTGAGAAGAAAGTGGACAAATGCACCTCCCTGCCCTGTACAAATGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584797.2 False 3909 mRNA 0.45 11 19412027 19421296
XM_036962887.1 False 2659 mRNA 0.50 10 19413426 19421296
TU2240720 True 697 TUCP 0.56 5 19414842 19417849

Neighbor

gene id symbol gene type direction distance location
LOC110504326 LOC106611099 coding downstream 2916 19407108 ~ 19409111 (-)
LOC110505522 LOC106611101 coding downstream 29428 19378085 ~ 19382599 (-)
LOC110504202 LOC106588908 coding downstream 32466 19366672 ~ 19379561 (-)
LOC110505521 dpf3 coding downstream 53722 19311355 ~ 19358305 (-)
LOC118944210 ef-1g coding downstream 302093 19109626 ~ 19109934 (-)
exd1 LOC106611069 coding upstream 41464 19459418 ~ 19472995 (-)
LOC110505529 LOC106611064 coding upstream 178938 19600234 ~ 19607431 (-)
LOC100136175 LOC106611063 coding upstream 190813 19612109 ~ 19632795 (-)
pomt2 pomt2 coding upstream 212181 19633477 ~ 19642007 (-)
LOC110505531 LOC106611061 coding upstream 225807 19647103 ~ 19793000 (-)
G1959599 NA non-coding downstream 108189 19301048 ~ 19303838 (-)
G1959600 NA non-coding downstream 109468 19299161 ~ 19302559 (-)
G1959379 NA non-coding downstream 162287 19249486 ~ 19249740 (-)
G1959378 NA non-coding downstream 164564 19247081 ~ 19247463 (-)
G1959366 NA non-coding downstream 176248 19228496 ~ 19235779 (-)
G1959700 LOC106611065 non-coding upstream 91020 19512316 ~ 19512574 (-)
G1959701 NA non-coding upstream 93052 19514348 ~ 19515071 (-)
G1959727 NA non-coding upstream 106194 19527490 ~ 19527705 (-)
G1959733 NA non-coding upstream 108021 19529317 ~ 19529740 (-)
G1959632 NA other downstream 16463 19385737 ~ 19395564 (-)
LOC110505513 LOC106578354 other downstream 328264 19078852 ~ 19092504 (-)
LOC110505506 LOC108430664 other downstream 644505 18763775 ~ 18767607 (-)
LOC110505483 LOC106610862 other downstream 1701386 17698417 ~ 17710695 (-)
LOC110505478 NA other downstream 1799156 17609161 ~ 17612920 (-)
G1959757 NA other upstream 123134 19544430 ~ 19544883 (-)
LOC110505546 LOC106611046 other upstream 923046 20326197 ~ 20357077 (-)
G1961046 NA other upstream 927496 20348792 ~ 20413709 (-)
acyp1 acyp1 other upstream 985106 20406401 ~ 20407806 (-)

Expression


Co-expression Network