LOC110505539 (dlst)


Basic Information

Item Value
gene id LOC110505539
gene name dlst
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 19917594 ~ 19926699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584826.2
CTCCCACACTGCTTCCGCCTTTAGCAGGTTTTGGCGTACTACAGGGGAGGAGATTCCCTCCCGCCGACAGGTTGCTGTCATTACAGACACCATGTTATCCTACTCCCGGTGTCTCACCCGGAACTTCGGTCGTTCTCTCTCGGTCTTTCGTCAGGGAATCAATGTGTCTGCACGGCGGGCTGTGCCAGGATTGTCAGCTAGCTGTAGTGTCACTGTCAATAACCCTACGAAATGTGAGGCCAGGTCCAGCATCTTCCAAATCAGATACTTCAAGACATCTGTAGCTTGCAGGAATGAAGTCATCACAGTAAAGACACCTGCATTTGCAGAGTCTGTCACGGAGGGGGATGTGAGGTGGGAGAAAGCGGTTGGTGATTCTGTCAAAGAGGATGAGGTGGTTTGTGAAATTGAGACGGACAAGACATCCGTGCAGGTGCCGTCTCCTGCTGCTGGGGTGATTGAGGAGCTGCTGGTCCCTGATGGGGAGAAGGTCGAGGGAGGACAGGCTCTCTTCAAACTCCGGAAAGGAGCTGTTGCTGCCCAAGCTGCAGAGGccccagcagcagtagtagccactcctccacccccccatgatgcagccacaacgccctctccttctccctctgcagTGGGCCCCATCCCTACCACTATGCCCCCAGTGCCACCCGTCCCACGAGCTGCCATCTTTGCCACACCAGTTTCAGCCATCAAACccactgctgctcctgctgccccAGCCGCTGTCACAGATGGAGGGGGTAAACCAGTCAGGACAGAGCACAGGGTGAAGATGAACCGTATGCGTCTGAGAATCGCCCAGAGACTGAAGGAAGCCCAGAACACCTGCGCTATGTTGACAACATTTAATGAGGTCGACATGAGCAACATCAGTGAGATGAGGAAGGCCTACAAAGACGCTTTCCTGAAGAAACACAACATCAAGCTGGGCTTCATGTCTGCATTTGTCAAGGCTTCAGCATATGCTCTGATGGAACAGCCTGCCGTCAACGGAGtcATTGACGACACCACCAAAGAGATTGTGTACAGGGACTACGTGGACATCAGTGTGGCTGTAGCAACACCAAAGGGCTTGGTGGTGCCTGTCATCCGTGGAGTGGAGGGAATGAACTTCGCTGACATTGAGAAGACCATCAACGAGCTGGGGGAGAAGGCTCGTAAGAATGAGCTGGCCGTGGAGGACATGGATGGAGGAACCTTCACCATCAGCAACGGTGGCGTGTTTGGATCCATGTTTGGCACGCCCATCATCAACCCTCCGCAGTCTGCCATCCTGGGAATGCATGGTATCTTCGAGAGGCCAGTGGCCATCGAGGGCAAGGTGGAGATCCGCCCCATGATGTACGTGGCTCTGACGTACGACCATCGCCTCATCGACGGCAGAGAGGCGGTCACCTTCCTGCGTAAGATCAAGACTGTGGTAGAAGATCCCAGAGTGCTGCTACTGGACATGTGAGCCAGCCTCCCCAGTCAATGGCTAAACAAACCAACCTACCGCCCTTCACACGCAGCAGCTATACCTGCCTGATTAACCTAAACTGCAGACGTTTTGTGTTGGTTAACTAGGAAAAGGGATACTTGAATAGACCAAAAGGTGCATTGGACTTATTGCATGGGCTGaaattgtaaaaaaatgtatgctaAATGTTGTGTGTCTGGGGCAGGGAGTGGGTGTTGTACATCTCAAAGCACCATTTGCTATTTTCTACCTACAATAATTATAATATAAATGGCAAAAAGTTGCATTAAGTATTTTTCATGTACTTTTTCTGAGAACAAttgtagcctatcagaagatggACTGTGAAAACACTATATCCTAAGATGTTCATGGTACAGGTTATTGATGCTTTGTTACACTGATGAAGTGTCAGGACCCAGTCATCTCATTCACGCACACTTAAATTCTGTTTATGctgtgtaaaaaaacaaaactatTTAAAGACAAGATTTCAAGGTT

Function

symbol description
dlst Predicted to enable dihydrolipoyllysine-residue succinyltransferase activity. Acts upstream of or within several processes, including ATP biosynthetic process; heart contraction; and mitochondrion morphogenesis. Predicted to be part of oxoglutarate dehydrogenase complex. Is expressed in several structures, including immature eye; musculature system; nervous system; neural plate; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease and paraganglioma. Orthologous to human DLST (dihydrolipoamide S-succinyltransferase).

NR:

description
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like

GO: NA

KEGG:

id description
K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584826.2 True 1978 mRNA 0.51 15 19917594 19926699

Neighbor

gene id symbol gene type direction distance location
angel1 LOC106611057 coding downstream 24873 19883468 ~ 19892721 (-)
LOC110505533 LOC106611059 coding downstream 54713 19827909 ~ 19862881 (-)
LOC110505531 LOC106611061 coding downstream 124594 19647103 ~ 19793000 (-)
pomt2 pomt2 coding downstream 275587 19633477 ~ 19642007 (-)
LOC100136175 LOC106611063 coding downstream 284799 19612109 ~ 19632795 (-)
LOC110505541 LOC106611051 coding upstream 56524 19983223 ~ 20048442 (-)
LOC110505542 gpatch2l coding upstream 175059 20101758 ~ 20141822 (-)
LOC110505544 ift43 coding upstream 238469 20165168 ~ 20198478 (-)
LOC110505546 LOC106611046 coding upstream 399498 20326197 ~ 20357077 (-)
jdp2a LOC106611045 coding upstream 439281 20365980 ~ 20383084 (-)
G1960205 NA non-coding downstream 7097 19834886 ~ 19910497 (-)
G1960181 NA non-coding downstream 109678 19799744 ~ 19807916 (-)
G1960177 NA non-coding downstream 121506 19795766 ~ 19796088 (-)
G1960162 NA non-coding downstream 138953 19778441 ~ 19778641 (-)
G1960145 NA non-coding downstream 166748 19750593 ~ 19750846 (-)
G1960242 NA non-coding upstream 849 19927548 ~ 19927801 (-)
G1960270 NA non-coding upstream 50766 19977465 ~ 19977672 (-)
G1960604 tgfb3 non-coding upstream 283505 20210204 ~ 20219857 (-)
G1960671 NA non-coding upstream 381858 20308557 ~ 20308871 (-)
G1960681 NA non-coding upstream 386372 20313071 ~ 20313278 (-)
G1959757 NA other downstream 372711 19544430 ~ 19544883 (-)
exd1 LOC106611069 other downstream 454533 19459418 ~ 19472995 (-)
LOC110505524 LOC106611070 other downstream 499745 19412027 ~ 19421296 (-)
G1959632 NA other downstream 522030 19385737 ~ 19395564 (-)
LOC110505513 LOC106578354 other downstream 833831 19078852 ~ 19092504 (-)
G1961046 NA other upstream 422093 20348792 ~ 20413709 (-)
acyp1 acyp1 other upstream 479703 20406401 ~ 20407806 (-)
G1961081 NA other upstream 487105 20413804 ~ 20414118 (-)
LOC110505560 LOC106611035 other upstream 579526 20506225 ~ 20510972 (-)

Expression


Co-expression Network