LOC110505544 (ift43)


Basic Information

Item Value
gene id LOC110505544
gene name ift43
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 20165168 ~ 20198478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584837.2
GTCACCATGGAGATGGTTGCGGTGTGACGCTCCTGGTCCCCAGGAAGTAGCTCCATCTGTAAACGCACGGGGAAATGGACGATAATCTTCAACTCGGTGACAGTGGAGTTGTAAAGAATGTTGCAAAGTTAGGTCGACGGGCTCGCCAGGCTGCAGAGCAAACATCTTCAATGGAGGAGTATCGACACGTCAGGAAATCCTCTTCTTCTACGTCGATGGGAGAGGTACCCCCTCCTAAACCAGCCCGCAGGCAGGGCGGCTGGGCTGAGGAGACTTCTGGATCTGGATCAGCCAAGTCTGGAAGAAGGCCTGCCATGGTGGAGGACGTGGAAGACCGACGCCTTCGACCACAAACCCCCCAGGGCTCGGATGATGAAGGAGATATACCAGTGATTCCAGACCTTGATGAAGTACAAGAGGAAGACCTTACCATGCAAGTTGCTGCTCCTCCAAGCATCCAGGTGAACCGGGTAATGACATACAGAGATCTGGACAATGACCTCATGAAGTACTCTGCCTTCCAGACCCTGGATGGGGAGATTGACTTGAAGCTCCTCACCAAGGTTTTGGCTCCAGAGCAGGAGGTGCGGGAGGTGAgaggacGTGGGTTGGGACTGGGATCGTCTGTTTACGGAGGTGTCCTCAGAGCTGCTGACGGAATGGGatcaaggagagaaggaggagttatgatgtgttatgtgttatgatGACGAGCCTCCCCAGGATGGGATCGGGTGGACCAGGATGCCTCCTCTGGGACCTGGGTGGGTGCATGTCAAGGCTCTGTCCAAACATAGGGACCATCAAGTATATGTAGCTTGTTGTTCATATTCCAAATTTAGTgcacaatgtatttattttttctaaTAAGTTTAAACACGCCACATTTGTAGGTATATTTATTGTGAAATTAATTACTGTAATTTCTATAGTAGGTTGCAAATGAATTATCTTCTCTAAGACACAGAAGTTTAATGACACGTGCGGTATTTCACTGCAATGCTATCTGTTTGAATCTACCAAGACTGCTAGAAGACAAATCACTTTTGTTTAAAAATGCTGAATGCCTAAATGGTCTGATACAGATCAAAATGCCCTCATCTCCCACCTGCATTATCTACCCCCCTACAACCTCAGTCAGATACAAGTCCAAGGTTGACAATCACCTAAGCTGAAATCCACTTGATTGTGGTCAAATTAACATTCTTCATTAAAGCCCACAACTttattgttattgactgtgccATTGACTTTATCTTCCAGCTCTTCGACAAGAGCTGCCCCCTCTTTACTATTATCTCAAATGCATTGAACACACTTCCTATTGACAAATGGGGGATTAGCATACATTATATAAGGAAGACATCTTTCTCATTTGGAGATGGCTGGAGGTGTCCAGATGCATGCTCTCTCCAAACTTACATAACAACCATGCATCAAACCCAAACCACAGGACCTTAGGAGAGGCTGTAATACTATGTATGCCTATAGGCCTGAACATGAGTCCAATTCAACATAATACAGATTATTAGTAGCGAAGAAGCCCTCGGTGGAGTATGTCCTCTGCTCTTTACTTTTTTATATGTAAGGATGGAATCATTTATACCTAAGATCCTCTCACTGTCATAGTTTGCACACAAATGTTTAGTatgtatcagtgtgtgtttatgcCTTGTCTCCACTTAGATTAGTCTTTGGATCATGTGTGTGAATAAAGACGCAGGCCTCCAAAGCTA
>XM_021584838.2
GTCACCATGGAGATGGTTGCGGTGTGACGCTCCTGGTCCCCAGGAAGTAGCTCCATCTGTAAACGCACGGGGAAATGGACGATAATCTTCAACTCGGTGACAGTGGAGTTGTAAAGAATGTTGCAAAGTTAGGTCGACGGGCTCGCCAGGCTGCAGAGCAAACATCTTCAATGGAGGAGTATCGACACGTCAGGAAATCCTCTTCTTCTACGTCGATGGGAGAGGTACCCCCTCCTAAACCAGCCCGCAGGCAGGGCGGCTGGGCTGAGGAGACTTCTGGATCTGGATCAGCCAAGTCTGGAAGAAGGCCTGCCATGGTGGAGGACGTGGAAGACCGACGCCTTCGACCACAAACCCCCCAGGGCTCGGATGATGAAGGAGATATACCAGTGATTCCAGACCTTGATGAAGTACAAGAGGAAGACCTTACCATGCAAGTTGCTGCTCCTCCAAGCATCCAGGTGAACCGGGTAATGACATACAGAGATCTGGACAATGACCTCATGAAGTACTCTGCCTTCCAGACCCTGGATGGGGAGATTGACTTGAAGCTCCTCACCAAGGTTTTGGCTCCAGAGCAGGAGGTGCGGGAGgaggacGTGGGTTGGGACTGGGATCGTCTGTTTACGGAGGTGTCCTCAGAGCTGCTGACGGAATGGGatcaaggagagaaggaggagttatgatgtgttatgtgttatgatGACGAGCCTCCCCAGGATGGGATCGGGTGGACCAGGATGCCTCCTCTGGGACCTGGGTGGGTGCATGTCAAGGCTCTGTCCAAACATAGGGACCATCAAGTATATGTAGCTTGTTGTTCATATTCCAAATTTAGTgcacaatgtatttattttttctaaTAAGTTTAAACACGCCACATTTGTAGGTATATTTATTGTGAAATTAATTACTGTAATTTCTATAGTAGGTTGCAAATGAATTATCTTCTCTAAGACACAGAAGTTTAATGACACGTGCGGTATTTCACTGCAATGCTATCTGTTTGAATCTACCAAGACTGCTAGAAGACAAATCACTTTTGTTTAAAAATGCTGAATGCCTAAATGGTCTGATACAGATCAAAATGCCCTCATCTCCCACCTGCATTATCTACCCCCCTACAACCTCAGTCAGATACAAGTCCAAGGTTGACAATCACCTAAGCTGAAATCCACTTGATTGTGGTCAAATTAACATTCTTCATTAAAGCCCACAACTttattgttattgactgtgccATTGACTTTATCTTCCAGCTCTTCGACAAGAGCTGCCCCCTCTTTACTATTATCTCAAATGCATTGAACACACTTCCTATTGACAAATGGGGGATTAGCATACATTATATAAGGAAGACATCTTTCTCATTTGGAGATGGCTGGAGGTGTCCAGATGCATGCTCTCTCCAAACTTACATAACAACCATGCATCAAACCCAAACCACAGGACCTTAGGAGAGGCTGTAATACTATGTATGCCTATAGGCCTGAACATGAGTCCAATTCAACATAATACAGATTATTAGTAGCGAAGAAGCCCTCGGTGGAGTATGTCCTCTGCTCTTTACTTTTTTATATGTAAGGATGGAATCATTTATACCTAAGATCCTCTCACTGTCATAGTTTGCACACAAATGTTTAGTatgtatcagtgtgtgtttatgcCTTGTCTCCACTTAGATTAGTCTTTGGATCATGTGTGTGAATAAAGACGCAGGCCTCCAAAGCTA

Function

symbol description
ift43 Involved in cilium assembly and intraciliary retrograde transport. Located in centriolar satellite and cilium. Part of intraciliary transport particle A. Implicated in cranioectodermal dysplasia 3; retinitis pigmentosa 81; and short-rib thoracic dysplasia 18 with polydactyly.

NR:

description
intraflagellar transport protein 43 homolog A isoform X1

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process

KEGG:

id description
K19675 IFT43; intraflagellar transport protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584837.2 False 1736 mRNA 0.45 9 20165168 20198478
XM_021584838.2 True 1732 mRNA 0.45 9 20165168 20198478

Neighbor

gene id symbol gene type direction distance location
LOC110505542 gpatch2l coding downstream 23346 20101758 ~ 20141822 (-)
LOC110505541 LOC106611051 coding downstream 116726 19983223 ~ 20048442 (-)
LOC110505539 dlst coding downstream 238469 19917594 ~ 19926699 (-)
angel1 LOC106611057 coding downstream 272447 19883468 ~ 19892721 (-)
LOC110505533 LOC106611059 coding downstream 302287 19827909 ~ 19862881 (-)
LOC110505546 LOC106611046 coding upstream 127719 20326197 ~ 20357077 (-)
jdp2a LOC106611045 coding upstream 167502 20365980 ~ 20383084 (-)
fosaa LOC106611096 coding upstream 185022 20383500 ~ 20387373 (-)
mlh3 mlh3 coding upstream 201534 20400012 ~ 20406260 (-)
acyp1 acyp1 coding upstream 207923 20406401 ~ 20407806 (-)
G1960270 NA non-coding downstream 187496 19977465 ~ 19977672 (-)
G1960242 NA non-coding downstream 237367 19927548 ~ 19927801 (-)
G1960205 NA non-coding downstream 254671 19834886 ~ 19910497 (-)
G1960181 NA non-coding downstream 357252 19799744 ~ 19807916 (-)
G1960177 NA non-coding downstream 369080 19795766 ~ 19796088 (-)
G1960604 tgfb3 non-coding upstream 11726 20210204 ~ 20219857 (-)
G1960671 NA non-coding upstream 110079 20308557 ~ 20308871 (-)
G1960681 NA non-coding upstream 114593 20313071 ~ 20313278 (-)
G1960685 NA non-coding upstream 118088 20316566 ~ 20316805 (-)
G1960694 NA non-coding upstream 125306 20323784 ~ 20324052 (-)
G1959757 NA other downstream 620285 19544430 ~ 19544883 (-)
exd1 LOC106611069 other downstream 702107 19459418 ~ 19472995 (-)
LOC110505524 LOC106611070 other downstream 747319 19412027 ~ 19421296 (-)
G1959632 NA other downstream 769604 19385737 ~ 19395564 (-)
LOC110505513 LOC106578354 other downstream 1081405 19078852 ~ 19092504 (-)
G1961046 NA other upstream 150314 20348792 ~ 20413709 (-)
G1961081 NA other upstream 215326 20413804 ~ 20414118 (-)
LOC110505560 LOC106611035 other upstream 307747 20506225 ~ 20510972 (-)

Expression


Co-expression Network