LOC118944247 (LOC106611040)


Basic Information

Item Value
gene id LOC118944247
gene name LOC106611040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 20432621 ~ 20434988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039539.1
cgttagctaggctagggtttAGGGGCtatggttaaagggttaaggttagggttagctaaaagggttaaggttaggggaagggttagctaacatgctaagtagtagCAATGTTGCTAATTAGAGATTCAAACAAGCAATTTATGGCTTGCTTGATGTTCGTGTTATCCACCCACCTCGATTAACCATCCTCCTTTCGTTTTTGCCGTAAGTAACCATCTGTTTTATGAAACCATGCCAAATTTAACATATCATTCTAAATGGAGTGCCCCGGTTTTAGGTACagaatacgaaatgctctgagaccaggttgcgaGAGCTCCAAAAGGTGAACAAAACCAGCAGGCAGCGCCAAACACACTGGCATGGAGTTAGAGGCAGGTTGAAAGCCTTCAGGAACAGAAGGTGGCATTGCAGTCCAGCGTCACTGAAGTTGGCATTTATAAGTTGATGCACACAGTGCAGTTTAACTCCGAACCCATGCACATAAAAAGGGTTCTGGATAGGActgaaggaggaagaggataCAGAGGGCACCTGGACATGGCTTGATGGGACTGATCTGACTCAGGGGTACTGGGAAGACAGAGAGCCCAATGACCACTATGGAATGGAGGACTTTGCGGCCATCAAAATAAATCCCATGAAGTTCTGGAATGGTGCTACTTGTACAAGTGAAATGCAATCAAGGAAGGCTTATAAATGACTGTaaaatgtccattatttaatTAAGTAAATACATACATTGAAAATAGGCATTGGAATCAAATGTAAATTGAAGTTGTACATAGCATAAGATTGTATCTGTTGAAATAAATTGTCATACTGTAAAGTTAAACACATAGAAATGAATGAGTTCTGTATCTTTGATTATAACGAGTAATCAAAAACAAACAAGACTACAAATtgttgtcacatctgctcctgccacgccctctagtgctcatccggtgtctccttgacctgccaacactcccccagtgctctctccctctccgtgtgtgtgcgtgtgtgattgtgtgggcggagacaggtgtgctggagtcagagcagatccccaccagctgcaacctgtttcataatcaagacctctacaaatactcagtcctgccacttcctcactgccagatcgtaatctctgctcattatgcctgctctgactctggtccgTCTCCAGTCCAACATCTcgtcatcctgctactctgtcctggattccccacttTACTagtcccttggattcccctccggacctgctcaccctgtctcaacccctctcgctccagcctcaggcTCCGCATTTGTTTTCCAGCAACCTGCCAGAGCTTCCCCTGACCTGCACTCCATCTCCCcatgtttcaataaataccttggttacttca
>XR_005039540.1
gactgtttgtttttccatttatatataaaataactacaggggtcctaaaattcaaaatcaaatagctaaatgatccatgacCATgtcaaaacaattccatatgttagcttagtagaaccccctccCCCAACATTTCCATCAGTTCTATGCAATGTCTCTCTATGTGGAATACTGTAAGTGCTCTTCTCCATGGAGTAGGCCCATTTACATTGTAATGGTTTGAGAGCACTATAAGAGAAAGATTGTCCAAAATTCAGTTACCACTGATTAAATAAGCTTATTTCCTGCCTTGTGTTTGTTTGCTCAGGCATTTATAAGTTGATGCACACAGTGCAGTTTAACTCCGAACCCATGCACATAAAAAGGGTTCTGGATAGGActgaaggaggaagaggataCAGAGGGCACCTGGACATGGCTTGATGGGACTGATCTGACTCAGGGGATAATACCAGAACGTCTAGAAAGTAACCTTTAACTTGGTTTAAAAAGGTACTGGGAAGACAGAGAGCCCAATGACCACTATGGAATGGAGGACTTTGCGGCCATCAAAATAAATCCCATGAAGTTCTGGAATGGTGCTACTTGTACAAGTGAAATGCAATCAAGGAAGGCTTATAAATGACTGTaaaatgtccattatttaatTAAGTAAATACATACATTGAAAATAGGCATTGGAATCAAATGTAAATTGAAGTTGTACATAGCATAAGATTGTATCTGTTGAAATAAATTGTCATACTGTAAAGTTAAACACATAGAAATGAATGAGTTCTGTATCTTTGATTATAACGAGTAATCAAAAACAAACAAGACTACAAATtgttgtcacatctgctcctgccacgccctctagtgctcatccggtgtctccttgacctgccaacactcccccagtgctctctccctctccgtgtgtgtgcgtgtgtgattgtgtgggcggagacaggtgtgctggagtcagagcagatccccaccagctgcaacctgtttcataatcaagacctctacaaatactcagtcctgccacttcctcactgccagatcgtaatctctgctcattatgcctgctctgactctggtccgTCTCCAGTCCAACATCTcgtcatcctgctactctgtcctggattccccacttTACTagtcccttggattcccctccggacctgctcaccctgtctcaacccctctcgctccagcctcaggcTCCGCATTTGTTTTCCAGCAACCTGCCAGAGCTTCCCCTGACCTGCACTCCATCTCCCcatgtttcaataaataccttggttacttca

Function

NR:

description
PREDICTED: C-type lectin domain family 4 member E-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039539.1 False 1376 mRNA 0.45 3 20432621 20434988
XR_005039540.1 True 1298 mRNA 0.43 2 20433557 20434988
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110505557 LOC106611038 coding upstream 2234 20427990 ~ 20430387 (+)
LOC110505558 LOC106611039 coding upstream 4729 20425844 ~ 20427892 (+)
zc2hc1c zc2hc1c coding upstream 21760 20407861 ~ 20410861 (+)
tmeda tmeda coding upstream 32273 20387433 ~ 20400348 (+)
LOC110505545 tgfb3 coding upstream 208343 20210196 ~ 20224278 (+)
LOC110505559 LOC106611036 coding downstream 6231 20441219 ~ 20500439 (+)
LOC110505561 LOC106611034 coding downstream 88077 20523065 ~ 20542189 (+)
tmed8 tmed8 coding downstream 112366 20547354 ~ 20549582 (+)
zgc:163014 LOC106611033 coding downstream 123034 20558022 ~ 20562270 (+)
LOC118944141 NA coding downstream 130235 20565223 ~ 20578821 (+)
G1960762 NA non-coding upstream 7381 20424936 ~ 20425240 (+)
G1960761 NA non-coding upstream 7944 20424444 ~ 20424677 (+)
G1960755 NA non-coding upstream 13943 20418310 ~ 20418678 (+)
G1960753 NA non-coding upstream 15100 20417312 ~ 20417521 (+)
G1960700 NA non-coding upstream 97777 20334558 ~ 20334844 (+)
G1960776 NA non-coding downstream 9256 20444244 ~ 20447906 (+)
G1960805 NA non-coding downstream 107286 20542274 ~ 20544850 (+)
G1960842 NA non-coding downstream 170900 20605888 ~ 20606151 (+)
G1960846 NA non-coding downstream 187480 20622468 ~ 20622886 (+)
G1960862 NA non-coding downstream 213310 20648298 ~ 20648858 (+)
G1960756 NA other upstream 13315 20418994 ~ 20419306 (+)
LOC110505516 LOC106611074 other upstream 1282421 19132397 ~ 19150399 (+)
G1959241 LOC106613263 other upstream 1284265 19147948 ~ 19148356 (+)
G1957752 LOC106610850 other upstream 2479133 17948648 ~ 17953488 (+)
LOC110505477 LOC106610865 other upstream 2804590 17611871 ~ 17628031 (+)
G1960851 NA other downstream 199151 20634139 ~ 20635612 (+)
G1960977 NA other downstream 387329 20822317 ~ 20822638 (+)
G1961468 NA other downstream 604217 21039205 ~ 21039800 (+)
G1961492 NA other downstream 632976 21067964 ~ 21068669 (+)
G1962316 NA other downstream 1357195 21792183 ~ 21844010 (+)

Expression

LOC118944247(LOC106611040) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC118944247(LOC106611040) Expression in each Bioproject

Bar chart with 19 bars.
LOC118944247(LOC106611040) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network