si:ch1073-416d2.3 (LOC106611008)


Basic Information

Item Value
gene id si:ch1073-416d2.3
gene name LOC106611008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 21708375 ~ 21710906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584911.2
AAAAAACAGACTTGACCAGTTTGAGTAACCCTAGCCCATAGTTAATAGATAACCCTAAAGGCACACTTGCACTTTGTCTCCCCAAATAGTAAATGGAGGGTTTTGACATATCTTGCTGATACCCAAGCTGAAAGTACTATTGCAGGTTGGATCAAATAAGTCACCAAAGAACTATGATGATGAAGGTGGGACTCCTTTTCCTCCTGACCTATGTCTGCACCTTCACCCCTGTCTACCCAACTCAAGAGCGGAGCCCCAACATTACAGACCTGACCTACAAGAACATGGACTTTGCCATGAATCTCTACAGAAAGATTGCAGGTTACCatgataaaaacatatttttctcaCCCCTGAGCATATCCACAGCTTTTGCCACCCTCTCCATGGCAGCGCAGGGTCCCACACGAGACCAGATAGTGAAGGGGCTCAACCTGGCCCACCTAGATCGGGAGAACCAGCCAGACATAATTCCAGAACTCTTCCAACACCTCCAAGGGAACATCACACAAGATGGATCATTGAAATTTGACCAGAGCACCGCCCTCTTCGTCCGCCAAACttttgaggtagagagagactacAGTGACCAGGTCAAGAAATTCTTTAACGCTGACATCAACCATGTTGATTTTGCAGATAGAAAAGCTAGCGTAGCCCTGATCAATGACTACATAACGAGAAAGACTGGTAACAAAGTCAAGGAGGTGGTCTCTAACTTGGATCCACTCACCCAACTCATGCTCATCAACACCATTTTCTTTCAGGGTGAATGGCAAATGCCCTTCAACCCCAATCACACAGAAAATGGACGCTTCTTTATTGACAACTACAACATTGTCCAGGTGCCCATGATGTTTAGAATGGAGGATAAGTTCTACACAATGGATGACATTCCCCTGAAAGCCAAGGTGCTGAAGCTACCTTACCGGGAGGGCGTTTCAATGCTTATTCTGCTACCCAACAAAGGCCTGGATTATACCACAATAGATGACGAGATCACAACTAAGAGATTCCTCAGCTGGATCAAAAACctgaaaaaaatGAAACTGGAAGTTCAACTGCCCAAGTTCAAGATGGAGCAATCTTACGCTATGCACAGCATCCTTCCAGATTTGGGCATATCCAGTATCTTCCATGACACCGCTAACCTCACTAGGTTGAGCAAAGACCCAGGCCTGAAGGTGTCAGAGGTGTTGCACAAGGCAGTGATTGAGGTGGATGAGAAAGGCACCACTGCAGCCGCTGCCACAGAAGGCACCATCACTGGATATGCCTTACCCTCTTCCTTCATTGTCAACCGACCATTCTTCTTTTTTATTTACCATGAGGCCACTAACAGCTTGTTGTTCATGGGCCGAGTGATTGACCCCACCAAAAACTGATTGTAAAGAGTACTGTGTATTTGGTGTCTGGAGAGGTGTTGTACATGTAATATGTTCAGTTCGTATGTATTAAAAGATGAACAGATATTCAACTGGTTTGGTGATCTTGCTAATATAAAGACCGTAACCTAAACATTTCAACCCTGCCCGAGTCCTTAAATTAAATGCATGTATCACATATTATCTAAAAAATTAAGCAAATATGACCAATGTTAGAGTCCAATTAATGTTACATTATAGAAAACCTATTCATGTGAAGTGTCTGATCTGCATTGTCAATGATGTCTTCTCCATCACTTCCGACACACATTCGAGCAACACTGCTCTCTGCTCAAGCTGAAAGGTTACTAATAAAGTTTTTCAAACCACGTGATTACAAATG

Function

NR:

description
protein Z-dependent protease inhibitor-like

GO: NA

KEGG:

id description
K04525 SERPINA; serpin A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584911.2 True 1767 mRNA 0.44 5 21708375 21710906

Neighbor

gene id symbol gene type direction distance location
atxn3 LOC106611010 coding upstream 624 21705323 ~ 21707751 (+)
LOC110505593 LOC106611009 coding upstream 10420 21693598 ~ 21697955 (+)
LOC110505588 LOC106611011 coding upstream 55527 21632006 ~ 21652848 (+)
LOC110505587 LOC106611090 coding upstream 100723 21596744 ~ 21607652 (+)
LOC110505582 LOC106610923 coding upstream 384612 21227450 ~ 21323763 (+)
LOC118944344 NA coding downstream 28613 21739519 ~ 21741609 (+)
LOC110505599 NA coding downstream 33887 21744793 ~ 21746597 (+)
LOC110505601 LOC106611002 coding downstream 47839 21758745 ~ 21771882 (+)
LOC110505603 LOC106610998 coding downstream 127547 21838453 ~ 21886964 (+)
itpk1b LOC106597151 coding downstream 196530 21907436 ~ 21967129 (+)
G1962235 NA non-coding upstream 78933 21629220 ~ 21629442 (+)
G1962228 NA non-coding upstream 86684 21621464 ~ 21621691 (+)
G1962204 NA non-coding upstream 120528 21587475 ~ 21587847 (+)
G1962196 NA non-coding upstream 132591 21575554 ~ 21575784 (+)
G1962192 NA non-coding upstream 135185 21572985 ~ 21573190 (+)
G1962293 NA non-coding downstream 33573 21744479 ~ 21744754 (+)
G1962432 NA non-coding downstream 250153 21961059 ~ 21962481 (+)
G1961492 NA other upstream 639706 21067964 ~ 21068669 (+)
G1961468 NA other upstream 668575 21039205 ~ 21039800 (+)
G1960977 NA other upstream 885737 20822317 ~ 20822638 (+)
G1960851 NA other upstream 1072763 20634139 ~ 20635612 (+)
G1960756 NA other upstream 1289069 20418994 ~ 20419306 (+)
G1962316 NA other downstream 81277 21792183 ~ 21844010 (+)
G1962880 rtn1 other downstream 558049 22250058 ~ 22274663 (+)
lrrc9 LOC106610979 other downstream 599438 22297012 ~ 22318009 (+)
G1962949 NA other downstream 681685 22392591 ~ 22392956 (+)

Expression


Co-expression Network