Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504330 |
| gene name | gphb5 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 22892083 ~ 22893341 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gphb5 | Predicted to contribute to hormone activity. Predicted to be involved in G protein-coupled receptor signaling pathway and regulation of thyroid hormone mediated signaling pathway. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Orthologous to human GPHB5 (glycoprotein hormone subunit beta 5). |
| description |
|---|
| PREDICTED: glycoprotein hormone beta-5 |
| id | name | namespace |
|---|---|---|
| GO:0005576 | extracellular region | cellular_component |
| GO:0005179 | hormone activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021583108.2 | True | 734 | mRNA | 0.53 | 3 | 22892083 | 22893341 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505631 | LOC106610967 | coding | downstream | 166078 | 22704448 ~ 22726005 (-) |
| LOC118944370 | NA | coding | downstream | 319607 | 22570272 ~ 22572476 (-) |
| six4a | LOC106610972 | coding | downstream | 378260 | 22508433 ~ 22513823 (-) |
| six1a | six1 | coding | downstream | 391746 | 22498171 ~ 22500337 (-) |
| dhrs7 | dhrs7 | coding | downstream | 519469 | 22365298 ~ 22372614 (-) |
| LOC110504210 | NA | coding | upstream | 32505 | 22925846 ~ 22954949 (-) |
| LOC110505636 | LOC106610964 | coding | upstream | 213038 | 23106379 ~ 23138160 (-) |
| brf1a | LOC106610962 | coding | upstream | 374203 | 23267544 ~ 23331891 (-) |
| LOC110505641 | LOC106610961 | coding | upstream | 451062 | 23344403 ~ 23354010 (-) |
| LOC110505642 | klc1 | coding | upstream | 464314 | 23357655 ~ 23393079 (-) |
| G1963683 | NA | non-coding | downstream | 12751 | 22879125 ~ 22879332 (-) |
| G1963663 | NA | non-coding | downstream | 25506 | 22866369 ~ 22866577 (-) |
| G1963613 | NA | non-coding | downstream | 92121 | 22798942 ~ 22799962 (-) |
| G1963610 | NA | non-coding | downstream | 103449 | 22788407 ~ 22788634 (-) |
| G1963609 | NA | non-coding | downstream | 104128 | 22787533 ~ 22787955 (-) |
| G1963717 | NA | non-coding | upstream | 12655 | 22905996 ~ 22906288 (-) |
| G1963736 | NA | non-coding | upstream | 24867 | 22918208 ~ 22919162 (-) |
| G1963759 | NA | non-coding | upstream | 41635 | 22934976 ~ 22935201 (-) |
| G1963778 | NA | non-coding | upstream | 68731 | 22962072 ~ 22962307 (-) |
| G1963834 | NA | non-coding | upstream | 125055 | 23018396 ~ 23018657 (-) |
| G1962803 | LOC106610988 | other | downstream | 795587 | 22095519 ~ 22096496 (-) |
| G1962524 | LOC106610994 | other | downstream | 894513 | 21990844 ~ 21997570 (-) |
| G1962691 | NA | other | downstream | 1005148 | 21876057 ~ 21886935 (-) |
| G1961670 | NA | other | downstream | 1722424 | 21164411 ~ 21169659 (-) |
| LOC110505583 | NA | other | downstream | 1922628 | 20962833 ~ 20969500 (-) |
| G1963846 | NA | other | upstream | 143550 | 23036891 ~ 23045704 (-) |
| G1964564 | NA | other | upstream | 271691 | 23165032 ~ 23168113 (-) |
| G1964592 | LOC106569888 | other | upstream | 328632 | 23221973 ~ 23222503 (-) |
| G1964728 | NA | other | upstream | 532222 | 23425563 ~ 23428841 (-) |
| G1967882 | NA | other | upstream | 3642023 | 26535364 ~ 26538708 (-) |
