LOC110505640 (LOC106610963)


Basic Information

Item Value
gene id LOC110505640
gene name LOC106610963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23308598 ~ 23315795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962242.1
GTGCTTTTCAAGCAGCGCTCACCTCTTTCGTAGTGTGGCCTCGCACACCTTCACTACACTAATGATTTCTTTGATGGTACGGCGGAACTCGTGCATGCGAGCAGCGACCAACAGGGctgagaacaaaaacacacacagAAACACTGAAAAAGTCTAAAACGACTGGGAAACACACAAGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCAACAACGGTACTACGGTGACCGGCACTGACAAGAAAAGCAATGTGCAGGTCACCCAGTCAACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGAACCTCCGAGCTGGCAGTCCTCGCACCCCACGCTACGGGAGAGGAACGCCTTGATGTTCAACAATGAACTCATGGCCGATATCCATTTCATTGTTGGTCCCTTCGGTGAATCTAAGAAAGTGCCAGCGCACAAGTATGTGCTGGCAGTGGGTAGCTCAGTCTTCTGTGCCATGTTTTATGGGGATCTTGCAGAGGAGTCGTCCGAAATCCATATCCCAGATGTAGAACCTGCTGCTTTTCTAATTCTGCTGAAGTACATGTACAGTGATGCAATAGACCTGGAGGCTGACACCGTGCTGGCCACCCTGTACGCTGCCAAGAAGTACATTGTACCCGCCCTGGCCAAGGCCTGCGTCAGCTTCCTGGAGACTAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACGCGGCGCTGCTGGGAGGTGATTGATGCGCAGGCAGAGCTGGCCCTGGGCGCAGAGGGCTTCTGTGAGATTGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACCCTCAACACCAAGGAGGTGGTGGTCTTTGATGCTGTCATGAGTTGGGCCACAGCAGAGTGTAAGAGGCAAGGACTGGGAGAAACCACCCGCAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACCCTGGAAGAGTTCGCTGATGGGGCAGCCCAGTCAGACATCCTGACACTGGAGGAGACGCATGACGTCTTCCTGTGGTACACAGCGGCCACCAAGCCCAAATTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCACCCCAGAAGTGCCACCGGTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTCGCAGTGGACAAGCGGATCTTTATTGCTGGACTGGGCCTGTATGGGTCAAGTGGTGGGAAGGCAGAGTACAGCGTCAAGATTGAACTGAAGCGTCAACGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTATCGGACGGATCAAGCAGTACATTTTCTGTATGGTTTGAAAACCCGGTTCAGGTGGAGCAGGATGTCTTCTATACGGTGAGTGCCGTGCTGGACGGGAATGAGCTGAGCTATTTCGGCCAGGAGGGCATGACAGAGGTACAGTGTGGAAAAGTGACATTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCAGAGCTGGTATTCTATGCATAAACTGAACTGGTCATAACGGACAAGTAGAGGACATATGGACTGTACATCCATGTGTTTAAGCCTTCTAAATAATGTAGCATTATTATGTCACTAAACAAAATACTATTTTTAAGTGAAGGAATgctgttatttattttaaaattattttaattATTAACTGCAAAAAGCAGTCCCTTGTAAAAAGTCGTATTGCACTTGTGGACAGCCtctgcaatgtttttttttgtacataaaGTACGGTTATATGGTGTGCAGCTTGATGCTGATCAATCCTGATGTTCTGTGCGAGAGCTTATGAACCTGCAGAAAATCATAAAAGTTATGCGAGATAAGCCACAGATGTTGCTGCTCATCATTATATAA
>XM_021584990.2
AATCTGATTTGTTGTTGGCAGCGAGCTGGGCGTCCGAGATGattatatcaaataaaataaaaaaaattcactGCAACTAAAACGCCAGACCCGACAAATTACAATTCACATCGTATCCACACATCAGCTAAGGAGGAACCCGCGCCTTTTCCTCGTTGATAAGTAGCTTTTGGAGAAAAACATCTGCCAGGATTTGCGCAGGAAAACAGCGAACTCCAAGCGAGCAACGATGATCTGTATTTACCATCAGCACAAAAAAGGGAAACAATACGTTTCGGGGAGAGCTCAGTGGCAATAGAGGATGAAATGAGAAAGGAGTATACTGCTTGAACTTGTTATACAACCTCAATCACTGGACGGATATTTTGTATGTTTCTCTTACAATTGATTCGGGGTTCGTAAGACTTAATCGCTGAATTTATGCAACATTTGCATCTAAAGGTCACGATTTGTGTATCAATTGTCAACGCAGATTAATAGTAGATCCTGGAGTTCGTGGTTTATTTTTAGGGAAAGGGCCAACGCTTTGTGTGCCGATGCCAACGGCAGATTGCAGGTTGCTCCATCATGGTCGGATCATGAAGTGTCTGACTTTTTTACTCTTACTTCCAGAAACACTGAAAAAGTCTAAAACGACTGGGAAACACACAAGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCAACAACGGTACTACGGTGACCGGCACTGACAAGAAAAGCAATGTGCAGGTCACCCAGTCAACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGAACCTCCGAGCTGGCAGTCCTCGCACCCCACGCTACGGGAGAGGAACGCCTTGATGTTCAACAATGAACTCATGGCCGATATCCATTTCATTGTTGGTCCCTTCGGTGAATCTAAGAAAGTGCCAGCGCACAAGTATGTGCTGGCAGTGGGTAGCTCAGTCTTCTGTGCCATGTTTTATGGGGATCTTGCAGAGGAGTCGTCCGAAATCCATATCCCAGATGTAGAACCTGCTGCTTTTCTAATTCTGCTGAAGTACATGTACAGTGATGCAATAGACCTGGAGGCTGACACCGTGCTGGCCACCCTGTACGCTGCCAAGAAGTACATTGTACCCGCCCTGGCCAAGGCCTGCGTCAGCTTCCTGGAGACTAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACGCGGCGCTGCTGGGAGGTGATTGATGCGCAGGCAGAGCTGGCCCTGGGCGCAGAGGGCTTCTGTGAGATTGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACCCTCAACACCAAGGAGGTGGTGGTCTTTGATGCTGTCATGAGTTGGGCCACAGCAGAGTGTAAGAGGCAAGGACTGGGAGAAACCACCCGCAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACCCTGGAAGAGTTCGCTGATGGGGCAGCCCAGTCAGACATCCTGACACTGGAGGAGACGCATGACGTCTTCCTGTGGTACACAGCGGCCACCAAGCCCAAATTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCACCCCAGAAGTGCCACCGGTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTCGCAGTGGACAAGCGGATCTTTATTGCTGGACTGGGCCTGTATGGGTCAAGTGGTGGGAAGGCAGAGTACAGCGTCAAGATTGAACTGAAGCGTCAACGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTATCGGACGGATCAAGCAGTACATTTTCTGTATGGTTTGAAAACCCGGTTCAGGTGGAGCAGGATGTCTTCTATACGGTGAGTGCCGTGCTGGACGGGAATGAGCTGAGCTATTTCGGCCAGGAGGGCATGACAGAGGTACAGTGTGGAAAAGTGACATTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCAGAGCTGGTATTCTATGCATAAACTGAACTGGTCATAACGGACAAGTAGAGGACATATGGACTGTACATCCATGTGTTTAAGCCTTCTAAATAATGTAGCATTATTATGTCACTAAACAAAATACTATTTTTAAGTGAAGGAATgctgttatttattttaaaattattttaattATTAACTGCAAAAAGCAGTCCCTTGTAAAAAGTCGTATTGCACTTGTGGACAGCCtctgcaatgtttttttttgtacataaaGTACGGTTATATGGTGTGCAGCTTGATGCTGATCAATCCTGATGTTCTGTGCGAGAGCTTATGAACCTGCAGAAAATCATAAAAGTTATGCGAGATAAGCCACAGATGTTGCTGCTCATCATTATATAA
>XM_036962241.1
AATCTGATTTGTTGTTGGCAGCGAGCTGGGCGTCCGAGATGattatatcaaataaaataaaaaaaattcactGCAACTAAAACGCCAGACCCGACAAATTACAATTCACATCGTATCCACACATCAGCTAAGGAGGAACCCGCGCCTTTTCCTCGTTGATAAGTAGCTTTTGGAGAAAAACATCTGCCAGGATTTGCGCAGGAAAACAGCGAACTCCAAGCGAGCAACGATGATCTGTATTTACCATCAGCACAAAAAAGGGAAACAATACGTTTCGGGGAGAGCTCAGTGGCAATAGAGGATGAAATGAGAAAGGAGTATACTGCTTGAACTTGTTATACAACCTCAATCACTGGACGGATATTTTAAACACTGAAAAAGTCTAAAACGACTGGGAAACACACAAGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCAACAACGGTACTACGGTGACCGGCACTGACAAGAAAAGCAATGTGCAGGTCACCCAGTCAACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGAACCTCCGAGCTGGCAGTCCTCGCACCCCACGCTACGGGAGAGGAACGCCTTGATGTTCAACAATGAACTCATGGCCGATATCCATTTCATTGTTGGTCCCTTCGGTGAATCTAAGAAAGTGCCAGCGCACAAGTATGTGCTGGCAGTGGGTAGCTCAGTCTTCTGTGCCATGTTTTATGGGGATCTTGCAGAGGAGTCGTCCGAAATCCATATCCCAGATGTAGAACCTGCTGCTTTTCTAATTCTGCTGAAGTACATGTACAGTGATGCAATAGACCTGGAGGCTGACACCGTGCTGGCCACCCTGTACGCTGCCAAGAAGTACATTGTACCCGCCCTGGCCAAGGCCTGCGTCAGCTTCCTGGAGACTAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACGCGGCGCTGCTGGGAGGTGATTGATGCGCAGGCAGAGCTGGCCCTGGGCGCAGAGGGCTTCTGTGAGATTGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACCCTCAACACCAAGGAGGTGGTGGTCTTTGATGCTGTCATGAGTTGGGCCACAGCAGAGTGTAAGAGGCAAGGACTGGGAGAAACCACCCGCAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACCCTGGAAGAGTTCGCTGATGGGGCAGCCCAGTCAGACATCCTGACACTGGAGGAGACGCATGACGTCTTCCTGTGGTACACAGCGGCCACCAAGCCCAAATTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCACCCCAGAAGTGCCACCGGTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTCGCAGTGGACAAGCGGATCTTTATTGCTGGACTGGGCCTGTATGGGTCAAGTGGTGGGAAGGCAGAGTACAGCGTCAAGATTGAACTGAAGCGTCAACGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTATCGGACGGATCAAGCAGTACATTTTCTGTATGGTTTGAAAACCCGGTTCAGGTGGAGCAGGATGTCTTCTATACGGTGAGTGCCGTGCTGGACGGGAATGAGCTGAGCTATTTCGGCCAGGAGGGCATGACAGAGGTACAGTGTGGAAAAGTGACATTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCAGAGCTGGTATTCTATGCATAAACTGAACTGGTCATAACGGACAAGTAGAGGACATATGGACTGTACATCCATGTGTTTAAGCCTTCTAAATAATGTAGCATTATTATGTCACTAAACAAAATACTATTTTTAAGTGAAGGAATgctgttatttattttaaaattattttaattATTAACTGCAAAAAGCAGTCCCTTGTAAAAAGTCGTATTGCACTTGTGGACAGCCtctgcaatgtttttttttgtacataaaGTACGGTTATATGGTGTGCAGCTTGATGCTGATCAATCCTGATGTTCTGTGCGAGAGCTTATGAACCTGCAGAAAATCATAAAAGTTATGCGAGATAAGCCACAGATGTTGCTGCTCATCATTATATAA
>XM_021584992.2
ATCTGATTTGTTGTTGGCAGCGAGCTGGGCGTCCGAGATGattatatcaaataaaataaaaaaaattcactGCAACTAAAACGCCAGACCCGACAAATTACAATTCACATCGTATCCACACATCAGCTAAGGAGGAACCCGCGCCTTTTCCTCGTTGATAAGTAGCTTTTGGAGAAAAACATCTGCCAGGATTTGCGCAGGAAAACAGCGAACTCCAAGCGAGCAACGATGATCTGTATTTACCATCAGCACAAAAAAGGGAAACAATACGTTTCGGGGAGAGCTCAGTGGCAATAGAGGATGAAATGAGAAAGGAGTATACTGCTTGAACTTGTTATACAACCTCAATCACTGGACGGATATTTTGTATGTTTCTCTTACAATTGATTCGGGAAACACTGAAAAAGTCTAAAACGACTGGGAAACACACAAGCAGGTTACCAGTATGCTATGAGATTCTAACCCTGTCCTTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCGACCAACAACGGTACTACGGTGACCGGCACTGACAAGAAAAGCAATGTGCAGGTCACCCAGTCAACAACCACTGCAACAACACCGACCACCCAGcaaaacataaacaacaacaacgtCGAACCTCCGAGCTGGCAGTCCTCGCACCCCACGCTACGGGAGAGGAACGCCTTGATGTTCAACAATGAACTCATGGCCGATATCCATTTCATTGTTGGTCCCTTCGGTGAATCTAAGAAAGTGCCAGCGCACAAGTATGTGCTGGCAGTGGGTAGCTCAGTCTTCTGTGCCATGTTTTATGGGGATCTTGCAGAGGAGTCGTCCGAAATCCATATCCCAGATGTAGAACCTGCTGCTTTTCTAATTCTGCTGAAGTACATGTACAGTGATGCAATAGACCTGGAGGCTGACACCGTGCTGGCCACCCTGTACGCTGCCAAGAAGTACATTGTACCCGCCCTGGCCAAGGCCTGCGTCAGCTTCCTGGAGACTAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTGTCCCAGAGCCGTCTGTTTGAGGAGCCTGAGCTGACGCGGCGCTGCTGGGAGGTGATTGATGCGCAGGCAGAGCTGGCCCTGGGCGCAGAGGGCTTCTGTGAGATTGACCTGCAGACCCTGAAGATCATCCTGCAGAGAGAGACCCTCAACACCAAGGAGGTGGTGGTCTTTGATGCTGTCATGAGTTGGGCCACAGCAGAGTGTAAGAGGCAAGGACTGGGAGAAACCACCCGCAACAAGAGATCTGTCCTGGGCAAGGCACTCTACCTGGTGCGCATCCCCACTATGACCCTGGAAGAGTTCGCTGATGGGGCAGCCCAGTCAGACATCCTGACACTGGAGGAGACGCATGACGTCTTCCTGTGGTACACAGCGGCCACCAAGCCCAAATTGGACTTCCCACTGGCACAGAGGCAGGGCCTGGCACCCCAGAAGTGCCACCGGTTCCAGTCGTCAGCCTACCGGAGCAACCAGTGGCGCTACAGGGGCCGCTGTGACAGCATCCAGTTCGCAGTGGACAAGCGGATCTTTATTGCTGGACTGGGCCTGTATGGGTCAAGTGGTGGGAAGGCAGAGTACAGCGTCAAGATTGAACTGAAGCGTCAACGGGTGACCCTAGCACAGAACCTGACCAAGTTTGTATCGGACGGATCAAGCAGTACATTTTCTGTATGGTTTGAAAACCCGGTTCAGGTGGAGCAGGATGTCTTCTATACGGTGAGTGCCGTGCTGGACGGGAATGAGCTGAGCTATTTCGGCCAGGAGGGCATGACAGAGGTACAGTGTGGAAAAGTGACATTTCAGTTCCAGTGCTCCTCGGACAGTACCAACGGGACTGGGGTGCAGGGGGGACAGATCCCAGAGCTGGTATTCTATGCATAAACTGAACTGGTCATAACGGACAAGTAGAGGACATATGGACTGTACATCCATGTGTTTAAGCCTTCTAAATAATGTAGCATTATTATGTCACTAAACAAAATACTATTTTTAAGTGAAGGAATgctgttatttattttaaaattattttaattATTAACTGCAAAAAGCAGTCCCTTGTAAAAAGTCGTATTGCACTTGTGGACAGCCtctgcaatgtttttttttgtacataaaGTACGGTTATATGGTGTGCAGCTTGATGCTGATCAATCCTGATGTTCTGTGCGAGAGCTTATGAACCTGCAGAAAATCATAAAAGTTATGCGAGATAAGCCACAGATGTTGCTGCTCATCATTATATAA

Function

NR:

description
BTB/POZ domain-containing protein 6-B-like isoform X2

GO: NA

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962242.1 False 2018 mRNA 0.51 5 23308598 23315795
XM_021584990.2 False 2492 mRNA 0.48 4 23312591 23315795
XM_036962241.1 False 2247 mRNA 0.49 5 23312591 23315795
XM_021584992.2 True 2273 mRNA 0.49 5 23312592 23315795

Neighbor

gene id symbol gene type direction distance location
LOC110505634 2a5e coding upstream 442795 22793084 ~ 22865803 (+)
wdr89 wdr89 coding upstream 510543 22795476 ~ 22798055 (+)
LOC110504209 NA coding upstream 528558 22770562 ~ 22780040 (+)
LOC110504329 LOC105895945 coding upstream 540233 22764658 ~ 22768365 (+)
LOC110505633 LOC106610968 coding upstream 577299 22727729 ~ 22731299 (+)
LOC110505643 LOC106610958 coding downstream 93564 23409359 ~ 23421308 (+)
LOC110505646 kcrt coding downstream 141863 23457658 ~ 23462167 (+)
LOC110505647 NA coding downstream 192240 23508035 ~ 23518659 (+)
LOC110505653 LOC106610949 coding downstream 380678 23696473 ~ 23704474 (+)
hao1 hao1 coding downstream 388869 23704664 ~ 23707351 (+)
G1964001 LOC106609167 non-coding upstream 55051 23253326 ~ 23253547 (+)
G1963999 NA non-coding upstream 56853 23251358 ~ 23251745 (+)
G1963981 NA non-coding upstream 86089 23222205 ~ 23222509 (+)
G1963948 NA non-coding upstream 134361 23174030 ~ 23174237 (+)
G1963945 NA non-coding upstream 136653 23171128 ~ 23171945 (+)
G1964046 NA non-coding downstream 4921 23320716 ~ 23322247 (+)
G1964055 NA non-coding downstream 20001 23335796 ~ 23336014 (+)
G1964059 NA non-coding downstream 23233 23339028 ~ 23339433 (+)
G1964060 NA non-coding downstream 24921 23340716 ~ 23340915 (+)
G1964087 NA non-coding downstream 78329 23394124 ~ 23394367 (+)
G1963734 NA other upstream 389912 22917946 ~ 22918686 (+)
G1962949 NA other upstream 915642 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 997797 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 1033935 22250058 ~ 22274663 (+)
LOC110505603 LOC106610998 other upstream 1440565 21838453 ~ 21886964 (+)
G1964177 NA other downstream 290139 23605934 ~ 23613765 (+)
G1964499 NA other downstream 760726 24076521 ~ 24076721 (+)
G1965262 NA other downstream 1044642 24360437 ~ 24360985 (+)
G1965263 NA other downstream 1045293 24361088 ~ 24361482 (+)
G1965396 NA other downstream 1249936 24565731 ~ 24567147 (+)

Expression


Co-expression Network