LOC110505651 (LOC106610950)


Basic Information

Item Value
gene id LOC110505651
gene name LOC106610950
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23654222 ~ 23659341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962220.1
tagctacacatttagctaggtaacgttagctaacggtAGTTAGGTAGCTAAACAATTTTCATGCGGGAGTATCCATGTCAGTTAGGGAGAGTGGAGAAATGTAGCTGGAAAAGGGAAGTTCATAATTTTAAAAACAGTGTTGTAATAATCTACCCCATTTATATCCGTTATTTTATAGTTAAACAATTATATCGCAGAGTGGgaattagctagctacagtaggtaACGTAGTTAGTTATTTCAAAATGGCCTCATCTCCGTTGTCGCCCCAGCGTCCCTGTTGCTCGAGCTAGACAAAGCATGCGGTACAGCTACCAGAGAAGGACATGCGCTATTGCAAGAGCCAAAATGTTCCCGAAGGGCACGAAGCGCAAGTTTTCCGACTCCAGGGAGGAACCTGTGGCAGGCGGTGAGGATGTGAATCAGTCGAGTTTGGCAGCTGTGAGGATGCTGTCGTCCTACAGCCTGCAGCGGCAGTCCCTGCTGGACATGTCCCTGATCAAACTGCAGCTGTGCCACATGCTGGTGGAGCCTAATCTGTGCCGTTCGGTGCTGATTGCCAACACGGTTAGGCAAATCCAGGAGGAGATGACCCAGGACGGCACCTGGCAGATCATGACCCAGGCCCTGAGTGCTGCCAACGCTGCTGCCCAGTGCTCTGCAGACCGCCTGGTGGCCACCGAGGTTCTGTGCCGGCAGACAGAGGCAGCCCAGGGGGAGCAGGTCCCCAAGCCCTTCCCAGTGGTGGGTTCAGAGGGCTGCCCTGCGGAGGaggtgttggaggaggaggaggaggcggcggCGGCAGAGGTGGGGATGACTATGTCCACTGTCTCCCCCCAAGCCCCAACCTCCTACCTGCCAGGCACCTTTGGCATGGACCCCTGctgggaagaggaggagacaggtgaagatgatgatgatgatgatgaggaggaggaggaggacagtgaggagtgtgggtctggctcagagggggaggagagggagcgtGACAGCCTGGTGGAGGACACCAGGACAGCAGAGCAGGTCTTTGGCACGTTCGAGATCAAAAACCCTGCGCCCAGCCCCGACCCTGCTCTGGAGGAACTGTTTTCAGACGTGGATGCGTCTTACTACGACCTTGATACAGTGCTGACAGGAATGCAGAGTGTTCCTAAGATGGGGCCCTATGACCTCCTGGAGAGCCTGTCCTCCCATGGGCCCTCACCCCTCAGTTCCAGCACCAGCTGCCGATCAGACCTCAATGAACTGGACCACATCATGGAGATCATAGTGGGCTCCTGAGAAACAACACACTTCCTTGCATACTTACTTTGCAGACTCGTTACAGACTGTGCACGTGGTGCGTATATTTGGATATGGTGTTATTATACGTTCAGATGTTGAGGGTTTATGAAATCAAGAACTTATTCAGTGTTACGACATGCAGCTGTGCATCTCTAAGTGGGCAGAGATTACAACCTATACCATTATGATTTTTCTTATTTGACATACTTTCTATATTTCTTTTTGTCATACAATCTATTTTTCcagttttgtttttatttattgtaaTATGTATGGACTGAAGAACAATGTCATTACACTACACACAAATAGACCCTCTGAAGCGATGCATATTTTCCTAAAGAGTAAAACAAATATTAGTGAAACatgtacgtacagttgaagtcagaagtttacatataccttggccaaatacatttaaactcagtttttcacaattcctgacatttcattctagtaaaaaattccctgtcttaggtcagttaggatcacccct
>XM_036962222.1
GGGGAAACGCACGCGAGCTCTGATTTACatgtgctgttgttgctgtgcCATTTCTTTGCGTTTTGAGAGTGTGGAGTGTACCTTTTGTTCTGGTGATCTCGTTCAAGTGACAATGACAGCCTGTCTATCAAGATGCATGGAACCCGCCCCATTCACCCCTCCTGCTCCCTGGCCGTAGCAAGCAGGGAGCAGTGAAGACGAGGTAGCTAGTTTTGAAGCCGTGGCATAAATGATCTCATCTCAGCCCGATCTCCGCTTTCTACAGAGGATCCTATGACCAACACCGgaataaagtaaaaataaagAGAGCCAAAATGTTCCCGAAGGGCACGAAGCGCAAGTTTTCCGACTCCAGGGAGGAACCTGTGGCAGGCGGTGAGGATGTGAATCAGTCGAGTTTGGCAGCTGTGAGGATGCTGTCGTCCTACAGCCTGCAGCGGCAGTCCCTGCTGGACATGTCCCTGATCAAACTGCAGCTGTGCCACATGCTGGTGGAGCCTAATCTGTGCCGTTCGGTGCTGATTGCCAACACGGTTAGGCAAATCCAGGAGGAGATGACCCAGGACGGCACCTGGCAGATCATGACCCAGGCCCTGAGTGCTGCCAACGCTGCTGCCCAGTGCTCTGCAGACCGCCTGGTGGCCACCGAGGTTCTGTGCCGGCAGACAGAGGCAGCCCAGGGGGAGCAGGTCCCCAAGCCCTTCCCAGTGGTGGGTTCAGAGGGCTGCCCTGCGGAGGaggtgttggaggaggaggaggaggcggcggCGGCAGAGGTGGGGATGACTATGTCCACTGTCTCCCCCCAAGCCCCAACCTCCTACCTGCCAGGCACCTTTGGCATGGACCCCTGctgggaagaggaggagacaggtgaagatgatgatgatgatgatgaggaggaggaggaggacagtgaggagtgtgggtctggctcagagggggaggagagggagcgtGACAGCCTGGTGGAGGACACCAGGACAGCAGAGCAGGTCTTTGGCACGTTCGAGATCAAAAACCCTGCGCCCAGCCCCGACCCTGCTCTGGAGGAACTGTTTTCAGACGTGGATGCGTCTTACTACGACCTTGATACAGTGCTGACAGGAATGCAGAGTGTTCCTAAGATGGGGCCCTATGACCTCCTGGAGAGCCTGTCCTCCCATGGGCCCTCACCCCTCAGTTCCAGCACCAGCTGCCGATCAGACCTCAATGAACTGGACCACATCATGGAGATCATAGTGGGCTCCTGAGAAACAACACACTTCCTTGCATACTTACTTTGCAGACTCGTTACAGACTGTGCACGTGGTGCGTATATTTGGATATGGTGTTATTATACGTTCAGATGTTGAGGGTTTATGAAATCAAGAACTTATTCAGTGTTACGACATGCAGCTGTGCATCTCTAAGTGGGCAGAGATTACAACCTATACCATTATGATTTTTCTTATTTGACATACTTTCTATATTTCTTTTTGTCATACAATCTATTTTTCcagttttgtttttatttattgtaaTATGTATGGACTGAAGAACAATGTCATTACACTACACACAAATAGACCCTCTGAAGCGATGCATATTTTCCTAAAGAGTAAAACAAATATTAGTGAAACatgtacgtacagttgaagtcagaagtttacatataccttggccaaatacatttaaactcagtttttcacaattcctgacatttcattctagtaaaaaattccctgtcttaggtcagttaggatcacccct
>XM_036962223.1
GTGAGGGGAAACGCACGCGAGCTCTGATTTACatgtgctgttgttgctgtgcCATTTCTTTGCGTTTTGAGAGTGTGGAGTGTACCTTTTGTTCTGGTGATCTCGTTCAAGTGACAATGACAGCCTGTCTATCAAGATGCATGGAACCCGCCCCATTCACCCCTCCTGCTCCCTGGCCGTAGCAAGCAGGGAGCAGTGAAGACGAGGTAGCTAGTTTTGAAGCCGTGGCATAAATGATCTCATCTCAGCCCGATCTCCGCTTTCTACAGAGGATCCTATGACCAACACCGgaataaagtaaaaataaagGAGCCTTGCTTCAGACTGGCCTAAAATGGGCAGAAAGGGTGCAGAACAAAAGCTGCTTGTTGCTTGTACAAAAGTACTGAAGCGCTGCAGCCGGGACCAAGCTGCTATGCTAATGCCTGTGCCTCTCAACAGGAAAGAGAGCCAAAATGTTCCCGAAGGGCACGAAGCGCAAGTTTTCCGACTCCAGGGAGGAACCTGTGGCAGGCGGTGAGGATGTGAATCAGTCGAGTTTGGCAGCTGTGAGGATGCTGTCGTCCTACAGCCTGCAGCGGCAGTCCCTGCTGGACATGTCCCTGATCAAACTGCAGCTGTGCCACATGCTGGTGGAGCCTAATCTGTGCCGTTCGGTGCTGATTGCCAACACGGTTAGGCAAATCCAGGAGGAGATGACCCAGGACGGCACCTGGCAGATCATGACCCAGGCCCTGAGTGCTGCCAACGCTGCTGCCCAGTGCTCTGCAGACCGCCTGGTGGCCACCGAGGTTCTGTGCCGGCAGACAGAGGCAGCCCAGGGGGAGCAGGTCCCCAAGCCCTTCCCAGTGGTGGGTTCAGAGGGCTGCCCTGCGGAGGaggtgttggaggaggaggaggaggcggcggCGGCAGAGGTGGGGATGACTATGTCCACTGTCTCCCCCCAAGCCCCAACCTCCTACCTGCCAGGCACCTTTGGCATGGACCCCTGctgggaagaggaggagacaggtgaagatgatgatgatgatgatgaggaggaggaggaggacagtgaggagtgtgggtctggctcagagggggaggagagggagcgtGACAGCCTGGTGGAGGACACCAGGACAGCAGAGCAGGTCTTTGGCACGTTCGAGATCAAAAACCCTGCGCCCAGCCCCGACCCTGCTCTGGAGGAACTGTTTTCAGACGTGGATGCGTCTTACTACGACCTTGATACAGTGCTGACAGGAATGCAGAGTGTTCCTAAGATGGGGCCCTATGACCTCCTGGAGAGCCTGTCCTCCCATGGGCCCTCACCCCTCAGTTCCAGCACCAGCTGCCGATCAGACCTCAATGAACTGGACCACATCATGGAGATCATAGTGGGCTCCTGAGAAACAACACACTTCCTTGCATACTTACTTTGCAGACTCGTTACAGACTGTGCACGTGGTGCGTATATTTGGATATGGTGTTATTATACGTTCAGATGTTGAGGGTTTATGAAATCAAGAACTTATTCAGTGTTACGACATGCAGCTGTGCATCTCTAAGTGGGCAGAGATTACAACCTATACCATTATGATTTTTCTTATTTGACATACTTTCTATATTTCTTTTTGTCATACAATCTATTTTTCcagttttgtttttatttattgtaaTATGTATGGACTGAAGAACAATGTCATTACACTACACACAAATAGACCCTCTGAAGCGATGCATATTTTCCTAAAGAGTAAAACAAATATTAGTGAAACatgtacgtacagttgaagtcagaagtttacatataccttggccaaatacatttaaactcagtttttcacaattcctgacatttcattctagtaaaaaattccctgtcttaggtcagttaggatcacccct
>XM_036962221.1
GTTGTGAGGGGAAACGCACGCGAGCTCTGATTTACatgtgctgttgttgctgtgcCATTTCTTTGCGTTTTGAGAGTGTGGAGTGTACCTTTTGTTCTGGTGATCTCGTTCAAGTGACAATGACAGCCTGTCTATCAAGATGCATGGAACCCGCCCCATTCACCCCTCCTGCTCCCTGGCCGTAGCAAGCAGGGAGCAGTGAAGACGAGGTAGCTAGTTTTGAAGCCGTGGCATAAATGATCTCATCTCAGCCCGATCTCCGCTTTCTACAGAGGATCCTATGACCAACACCGgaataaagtaaaaataaagAATACACACTCGCACTGTTGCGTAGTCAGCTAATTTCTCCATTCAAAAAAGCATAAGCGGCAGCGGAAATACTGTCAACGTCAGTATTGTGGGGGAGGGGAGACTATTCCTAGGTGGAGCcagagacgaggaggaggaggatctcTGGTGGAGCTGTGGGTGTTAATGCTATTTTATAGAGCCAAAATGTTCCCGAAGGGCACGAAGCGCAAGTTTTCCGACTCCAGGGAGGAACCTGTGGCAGGCGGTGAGGATGTGAATCAGTCGAGTTTGGCAGCTGTGAGGATGCTGTCGTCCTACAGCCTGCAGCGGCAGTCCCTGCTGGACATGTCCCTGATCAAACTGCAGCTGTGCCACATGCTGGTGGAGCCTAATCTGTGCCGTTCGGTGCTGATTGCCAACACGGTTAGGCAAATCCAGGAGGAGATGACCCAGGACGGCACCTGGCAGATCATGACCCAGGCCCTGAGTGCTGCCAACGCTGCTGCCCAGTGCTCTGCAGACCGCCTGGTGGCCACCGAGGTTCTGTGCCGGCAGACAGAGGCAGCCCAGGGGGAGCAGGTCCCCAAGCCCTTCCCAGTGGTGGGTTCAGAGGGCTGCCCTGCGGAGGaggtgttggaggaggaggaggaggcggcggCGGCAGAGGTGGGGATGACTATGTCCACTGTCTCCCCCCAAGCCCCAACCTCCTACCTGCCAGGCACCTTTGGCATGGACCCCTGctgggaagaggaggagacaggtgaagatgatgatgatgatgatgaggaggaggaggaggacagtgaggagtgtgggtctggctcagagggggaggagagggagcgtGACAGCCTGGTGGAGGACACCAGGACAGCAGAGCAGGTCTTTGGCACGTTCGAGATCAAAAACCCTGCGCCCAGCCCCGACCCTGCTCTGGAGGAACTGTTTTCAGACGTGGATGCGTCTTACTACGACCTTGATACAGTGCTGACAGGAATGCAGAGTGTTCCTAAGATGGGGCCCTATGACCTCCTGGAGAGCCTGTCCTCCCATGGGCCCTCACCCCTCAGTTCCAGCACCAGCTGCCGATCAGACCTCAATGAACTGGACCACATCATGGAGATCATAGTGGGCTCCTGAGAAACAACACACTTCCTTGCATACTTACTTTGCAGACTCGTTACAGACTGTGCACGTGGTGCGTATATTTGGATATGGTGTTATTATACGTTCAGATGTTGAGGGTTTATGAAATCAAGAACTTATTCAGTGTTACGACATGCAGCTGTGCATCTCTAAGTGGGCAGAGATTACAACCTATACCATTATGATTTTTCTTATTTGACATACTTTCTATATTTCTTTTTGTCATACAATCTATTTTTCcagttttgtttttatttattgtaaTATGTATGGACTGAAGAACAATGTCATTACACTACACACAAATAGACCCTCTGAAGCGATGCATATTTTCCTAAAGAGTAAAACAAATATTAGTGAAACatgtacgtacagttgaagtcagaagtttacatataccttggccaaatacatttaaactcagtttttcacaattcctgacatttcattctagtaaaaaattccctgtcttaggtcagttaggatcacccct

Function

NR:

description
cell division cycle-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962220.1 False 1786 mRNA 0.49 2 23654222 23658902
XM_036962222.1 False 1752 mRNA 0.51 2 23654222 23659334
XM_036962223.1 False 1893 mRNA 0.51 3 23654222 23659338
XM_036962221.1 True 1936 mRNA 0.51 3 23654222 23659341

Neighbor

gene id symbol gene type direction distance location
LOC118944143 NA coding downstream 5205 23645133 ~ 23649017 (-)
LOC110504212 LOC106586451 coding downstream 27317 23605873 ~ 23626905 (-)
LOC110505650 LOC106611086 coding downstream 61697 23589249 ~ 23592525 (-)
LOC110505649 LOC106610953 coding downstream 104911 23531467 ~ 23549311 (-)
LOC100136135 LOC106610954 coding downstream 127022 23519410 ~ 23527200 (-)
LOC110505652 LOC106599624 coding upstream 3651 23662992 ~ 23691460 (-)
LOC118944134 NA coding upstream 48385 23707726 ~ 23725668 (-)
supt3h supt3h coding upstream 87364 23746705 ~ 23756544 (-)
clic5a clic5 coding upstream 102922 23762263 ~ 23775090 (-)
LOC110505660 LOC106610943 coding upstream 130734 23790075 ~ 23798567 (-)
G1964835 NA non-coding downstream 3348 23650201 ~ 23650874 (-)
G1964813 NA non-coding downstream 56995 23597018 ~ 23597227 (-)
G1964794 NA non-coding downstream 78335 23569782 ~ 23575887 (-)
G1964749 NA non-coding downstream 178263 23475674 ~ 23475959 (-)
G1964743 NA non-coding downstream 212456 23441554 ~ 23441766 (-)
G1964509 NA non-coding upstream 45339 23704680 ~ 23706779 (-)
G1964515 NA non-coding upstream 85126 23744467 ~ 23746301 (-)
G1964861 NA non-coding upstream 91231 23750572 ~ 23750935 (-)
G1964876 NA non-coding upstream 119395 23778736 ~ 23778986 (-)
G1964728 NA other downstream 225578 23425563 ~ 23428841 (-)
G1964592 LOC106569888 other downstream 431719 23221973 ~ 23222503 (-)
G1964564 NA other downstream 486109 23165032 ~ 23168113 (-)
G1963846 NA other downstream 608518 23036891 ~ 23045704 (-)
G1962803 LOC106610988 other downstream 1557726 22095519 ~ 22096496 (-)
G1967882 NA other upstream 2876023 26535364 ~ 26538708 (-)
LOC110505716 LOC106024658 other upstream 3057343 26716542 ~ 26765410 (-)
G1969699 LOC100380709 other upstream 4440580 28099921 ~ 28101436 (-)
G1969724 NA other upstream 4484097 28143438 ~ 28143762 (-)
G1970606 NA other upstream 5198599 28857940 ~ 28861987 (-)

Expression


Co-expression Network