LOC110505676 (LOC106610929)


Basic Information

Item Value
gene id LOC110505676
gene name LOC106610929
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24235278 ~ 24289662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585057.2
GTAGCCCGTGACGCGTGGGGAATGCAATCTGCTGCGAGGGAGCTCAAGCGTCCAGGTACACCTCAGAAAATGCGCAGCTCCTCAGACGTGCTTGTGTTGCACGATGCCCCACATAGCGCTGACTAAAGGTGAACTGAGAGCCGTGTTCAATGCTTATTCTTTTAAGATCTTCAGTCGATCAACACGGGGAGACCTGCTTGATGCAAATCTGCTCCGGACACTGCTGTGTCTGCTGAAATGCTCGAATTAACCGGAGTGGATGGGATCTGCCTAGCATATTGATACCGTGCAGCTACTGCATGCATCCCGGCGCGGGCTTCTTGCGCCATCATCGACACCTCGGGTGAAACGCGAATAGCCTACCCATTTTATTTAAAAGCCACCGACATTTCTACGAAATAGCGTGGTTTTTGTGCAAATACAGTTTTGATGTTGGTAAAAAGACGCGCATGCGTTGGTCTTGGAATAATTGGACAGCCTGTGACTTAAGTAGGTAGCATTCCTTAAATCTTCGCTCAAAGTCATCTCTCTGATCAAAGTTAGTGATGTGCACGGCTTTGGACCGCGGACGTTGGGGGATTTTTTGTCTTTTCCTCATGGTCGCCATGGTCTGCGGCGCTCAAAGCGCCAACGAGCAAAGCAACATGTCATTTGTGAAAGCGACCGTCGACAAACTGCTGAAGGGGTATGACATTCGTCTGAGGCCTGATTTTGGAGGTGCCCCTGTGGACGTTGGCATGAGCATAGATATCGCCAGTATCGACATGGTTTCGGAAGTCAACATGGAttacaccatcactatgtacttcCAGCAGTCCTGGAGGGACAAGCGCTTGTCCTACACAGGGATTCCCCTCAACCTGACACTGGACAACAGGGTGGCAGACTCACTCTGGGTCCCTGACACCTACTTCATCAACGATAAGAAGTCCTTTGTGCACGGGGTCACAGTGAAGAACAGAATGATCCGACTTCATCCTGACGGAACTGTGCTCTATGGCCtcaggatcaCCACTACTGCAGCTTGCATGATGGACTTGCGTAGATACCCACTGGATGAGCAGAACTGCACCCTGGAGATCGAGAGCTATGGGTACACCACTGATGACATCGAGTTCTACTGGAAAGGTGATAATTCAGTGACTGGGGTGGAGAACATCGAACTGCCCCAATTCTCTATAATAGACTACCACATCCAATCCACAAAAGCAGTGTTTGCTACAGGCTCCTACCCGAGGCTCTCTCTGAGTTTTAAGCTGAAGAGGAACATTGGCTACTTCATCCTACAGACCTACATGCCCTCAACCCTGATCACCATCCTATCCTGGGTCTCCTTCTGGATCAACTATGACGCGTCTGCGGCCAGAGTCGCTTTAGGCATAACCACTGTGCTGACCATGACCACCATCAACACCCACTTGAGAGAGACTTTGCCCAAAATCCCCTACGTCAAGGCTATAGACATCTACCTGATGGGCTGCTTCGTGTTCGTCTTCCTCGCTCTGCTGGAGTATGCCTTTGTCAACTACATCTTCTTCGGACGGGGGCCTCACTTGCAGAAAAAGGTGGCTGAGAAAGCAGCTCAAACCAATAACGAAAATAAGAGCAGATTGGAGAGTAACAAAGTGCAGGTGGACGCCCACGGCAATATCCTCCTGACCAATCTGGAGATCCGTAACGAGATGGGCGGGATGGGGGGCATGGCCGGGATGACCGGGGCTGAAATGATAGGGGCTCTCAACGACCCGCGGGCCACCATGTTCTCCTACGACAGCGCCAGCATACAGTACCGTAAGCCCATGGCCAGCCGAGATCTGTACGGTCGACCGGCCCTCGACCGGCCAGTCGGCCACAAGAAGAGTCGTTTGAGGAGGAGGGCGTCGCAGCTCAAAGTCAAGATCCCAGACCTGACGGACGTCAACACCATAGACAAGTGGTCCCGTGTCATCTTCCCTATCGCCTTCACCTTCTTCAACCTGGTCTACTGGCTGTACTACGTCCACTAGGGTGCGTGGCTATTCCCGCTAGAggtttgtttagctagctaggttcTTGTACAGCAAGGGTAAAAGAGAGGGGAGTTAAATTCTGCCCAGTTTGTATGACTTCTGTTTGAGGAATGCGAGGCGAAGCGGATGTCTTTTCAATGTAAATACAATTTATTATatgatataaataaataaataaatatatatatatatatattaaaatatatatatatattaaaatatatattaaaatatatatatatata

Function

NR:

description
gamma-aminobutyric acid receptor subunit beta-1-like isoform X1

GO: NA

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585057.2 True 2254 mRNA 0.49 9 24235278 24289662

Neighbor

gene id symbol gene type direction distance location
LOC110505673 NA coding upstream 154533 24078721 ~ 24080745 (+)
enpep LOC106610934 coding upstream 176365 24032882 ~ 24058913 (+)
LOC110505665 ampm1 coding upstream 243816 23972896 ~ 23991462 (+)
LOC110504213 NA coding upstream 473975 23756983 ~ 23761303 (+)
LOC110505657 cdc5l coding upstream 488952 23737748 ~ 23746326 (+)
LOC110505678 LOC106611137 coding downstream 23812 24313474 ~ 24355303 (+)
zgc:123321 yipf5 coding downstream 86165 24375827 ~ 24378263 (+)
utp25 diexf coding downstream 95477 24385139 ~ 24391050 (+)
LOC110505684 LOC106611134 coding downstream 157951 24447613 ~ 24449656 (+)
slc66a3 pqlc3 coding downstream 214610 24504272 ~ 24507841 (+)
G1965173 NA non-coding upstream 22141 24212929 ~ 24213137 (+)
G1965169 NA non-coding upstream 25984 24208963 ~ 24209294 (+)
G1965160 NA non-coding upstream 31788 24203286 ~ 24203490 (+)
G1965154 NA non-coding upstream 35660 24199315 ~ 24199618 (+)
G1965150 NA non-coding upstream 38070 24196991 ~ 24197208 (+)
G1965239 NA non-coding downstream 8302 24297964 ~ 24299706 (+)
G1965255 NA non-coding downstream 49480 24339142 ~ 24339506 (+)
G1965264 NA non-coding downstream 72031 24361693 ~ 24362029 (+)
G1965265 NA non-coding downstream 73428 24363090 ~ 24363296 (+)
G1965266 NA non-coding downstream 73668 24363330 ~ 24363556 (+)
G1964499 NA other upstream 158557 24076521 ~ 24076721 (+)
G1964177 NA other upstream 621513 23605934 ~ 23613765 (+)
G1963734 NA other upstream 1316592 22917946 ~ 22918686 (+)
G1962949 NA other upstream 1842322 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 1924477 22297012 ~ 22318009 (+)
G1965262 NA other downstream 70775 24360437 ~ 24360985 (+)
G1965263 NA other downstream 71426 24361088 ~ 24361482 (+)
G1965396 NA other downstream 276069 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 499465 24788926 ~ 24791594 (+)
G1967032 NA other downstream 1541914 25831576 ~ 25833321 (+)

Expression


Co-expression Network