utp25 (diexf)


Basic Information

Item Value
gene id utp25
gene name diexf
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24385139 ~ 24391050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585067.2
GGAAGTGACGATTTTGATCTGCGAAAAAACCCAAACACACGTGTGTCCCGACCAAGCTAAAGTTATCTAGCTATCTAGTGACTGAACCGTCAACAATGGGGAAGAGAAAACAGAAGAATCAGATATTTAATAATTTATCAAAAAAGCAGAAGAAACATCTGAAAGAATTTGGAGAGGAGCATCCATTCCATGATATAGTCACAGAAAAGGCAGAGAAAACACAAATATTGGATCTGCCAGACAGCCCAGTACAGTCCTGTGCTGAAAGTGACGAGGACGAAGAACCAGAGCACAAGTCAGCATACCAGAAGTTGTTGTCTACTCTCAGCAGCCCTGCAGACCACGAAAGCGAATATGAGAgtgtagatgatgatgatgatgaagaagaggatgaggaagaggtaGAAGAGCATCTCAGTGAAGAAGGAAGTGATGGAGATGATGAGGAATGTCAAGACGCAGGAAACAATTTGACTCTGACACCAGAAGAGGCAGATGAGGGGGAAGCAGGACCAAATGAAGGGGGTGAGGATGCTATGGAGAATGAAACAGCAGGAGGAGTGGAGTTTGAGGACAAGGAACATGAGTCTCAGTTCTGTCTGGAGAACAACTTCTCTGGAGAAGGAGAACAGGAGGGTGCAGAGAGCACTGCTAAACAAGAGGATGAGGAAGACTCCTTTAAGCTGCACCTTGACACAGAGATTAGTGAGGAGGACGTAAAACGGATCACTGCTCGCACTAAGGCCAAGGCTCAGGTCAAGTGGCCAAGCCTGGGcaccctcctctgctcctcccctcTGGAGAAGTTTGGTCCCGCCGGCCAGGAGAAAGACAAAAGGCCTCTGGTGCTCCACAAAGCCCTGGAAACTAACTGGACATCTCTGAACCAGACCTCCAACTCTAAGGGAGCTGTGGAGGAGGTCAGTCCACTGCAGCTGGAGCTGCTGTCTCTAATGGGTTCCTACAGGGACGTGTACTTCCCAGAGAGCTCACCACTCACCGAGGGCTGGCAGGTCCGCAGTGCCTACTGCCTCCACGCACTCAACCACGTGCTGAAGGCCAACTCTGGCGTTCTGGGTCATAATGCCCAGACGAGGGAGAACCAAGCCGCAGACAAGGCCGGAGGGAACAAGGCCGGAGTTGAGCCACAGGATGAGCCCCGGGACCAAGGCCTGACCCGACCCAAGGTTCTGATCCTGGTGCCGTTCCGAGATGGAGCGCTGCGGGTGGTCCAGACCCTCATCAACCTCCTGGAAACCAAGGGCAGGAAGATGGATGTCAGCAACAAGAAGAGGTTCAAGGATGAATTTGGAGAGGAACCAGTGAACACGCCACCCAACCTCTTCAGACCAGACGACTACACCGCCATTTTCTCTGGCAATATCGACGATCACTTCAGGATAGGAGTTTCCATCTTGAGGAGAAGCATTCGGCTCTATGCACCCTTCTACTCCTCTGACATCATCATAGCGTCTCCGCTGGGCCTGCGTACAGTGCTGGGGGTGGATGGCGAGGCCAAGCGGGACTACGACTTCTTGTCCTCCATCGAGATACTGGTGGTGGACCAGGCCGACGTCTTCCTCATGCAGAACTGGGAGCACCTACTGCATGTGATGAAGCATCTGAACCTGCAGCCCTTGGACCCCCATGGGGTGGACTTCTCCAGGGTGCGCATGTGGAACCTGAACAACTGGGCCAAGTACTATCGCCAGACACTGATGTTCAGCTCTATCCAGGACCCacagatcaacaacatcatctcTAAGCACTGCTTCAACTACCGCGGCCAGGTTGCCACCAAGAATATGCCTATAACAGGCTCTATCTGCCAGGTTCTGGTTCAGCTCCCTCATGTCTTCCAGATGATCAACTCTAACAGCTTCATGGACCAGGATGCAAGGTTCCAATTCTTTGTGGACAAGGTCCTGCCCCAGTACAGGGACTCAGTCATGTCCCACACGCTCATCTATGTTCCCTCATACTTCGACTACGTCCGACTGCGCAACTACATGAAGAAGGAGGAGATCAACTTTGCCAGTATATGCGAGTACTCGACCAAGTCAGAGGTGTCCCGTGCCAGGCACTTTTTCCAGAAGGGAGATAAACAGTTTATTCTCTTCACCGAACGCTTCCACTTCTACAAGAGATACACCATCAAGGGAATCAAGAACCTGATCTTCTATGGGCTGCCCTCATACCCTCACTTCTACAGTGAGGTGTGCAACATGCTGCAGGCAGGGGGCCAAGGAGAGGAGGCTAGCTGGACTTGCACAGCCCTCTACTCACGCTATGACGCCCAGCGCCTCGCTGCCATCACTGGGGCCCAAAGGGCCGCTCAGATGCTGCAGTCCCAGAAGCCCGCACACCTGTTCGTCACGGGCGAGGAGAAGGGCCCTATGGGCCCCTAACACAGACGGAAAGTGACTGATATCTGTAGGTAGGAAGAGGGAACTTCCTTTCAACAGCCACTTTGGTTTTATGATCATGAAAATGTATTGACTTTAGTCAGACATGCTGTTGAAAAGAATATCAGCTTTTTTTTCCCCCGTTTTCTCTCCAATTCCGTGGTATCCAATtatttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaacccaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaaccCGGAagtaccaatgtgtcggaggaaacaccgtgcacctgcgcccggcccaccacaggagtcgctggtgcgcgatgagacaaggatatccctatcgaccaacccctccctaacccggacgacgctaggccaattgttcgtcgccccacggacctcccggtcgcagccggttacgacagagcctggacgcgaacccagagtctctggtggcaccgttggcgctgcagtacagcgcccttaaccactgcgccaccccgAACAGTGATTTTTATGAATACACCCAAAGTTTCAAGTATGGTATTAAAGCGATGTTACTTGAGATTAAGTGTCTTCAACATTTTTTACTCAAACGAGTCTATTACCAGCATTCAAATGTTTTGTCATGTTAGCATATTGCTTTTAAATACTTTAAGTGATACAGATGTGCACCTTTGCTTTGATAATTTAGTTATGTTAATTTTTCTA

Function

NR:

description
digestive organ expansion factor homolog

GO:

id name namespace
GO:0035265 organ growth biological_process
GO:0030163 protein catabolic process biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0031648 protein destabilization biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14774 UTP25, DEF; U3 small nucleolar RNA-associated protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585067.2 True 3183 mRNA 0.51 12 24385139 24391050

Neighbor

gene id symbol gene type direction distance location
zgc:123321 yipf5 coding upstream 6876 24375827 ~ 24378263 (+)
LOC110505678 LOC106611137 coding upstream 29836 24313474 ~ 24355303 (+)
LOC110505676 LOC106610929 coding upstream 95477 24235278 ~ 24289662 (+)
LOC110505673 NA coding upstream 304394 24078721 ~ 24080745 (+)
enpep LOC106610934 coding upstream 326226 24032882 ~ 24058913 (+)
LOC110505684 LOC106611134 coding downstream 56563 24447613 ~ 24449656 (+)
slc66a3 pqlc3 coding downstream 113222 24504272 ~ 24507841 (+)
LOC110505689 pdss2 coding downstream 204536 24595586 ~ 24617110 (+)
LOC110505690 LOC106611127 coding downstream 235568 24626618 ~ 24631359 (+)
LOC110505692 gdf7 coding downstream 251998 24643048 ~ 24648427 (+)
G1965273 NA non-coding upstream 3669 24381163 ~ 24381470 (+)
G1965271 NA non-coding upstream 4981 24379951 ~ 24380158 (+)
G1965266 NA non-coding upstream 21583 24363330 ~ 24363556 (+)
G1965265 NA non-coding upstream 21843 24363090 ~ 24363296 (+)
G1965264 NA non-coding upstream 23110 24361693 ~ 24362029 (+)
G1965188 NA non-coding downstream 5216 24396266 ~ 24398009 (+)
G1965292 NA non-coding downstream 29660 24420710 ~ 24421078 (+)
G1965300 NA non-coding downstream 38426 24429476 ~ 24429866 (+)
G1965304 NA non-coding downstream 42803 24433853 ~ 24434102 (+)
G1965315 NA non-coding downstream 59996 24451046 ~ 24452013 (+)
G1965263 NA other upstream 23657 24361088 ~ 24361482 (+)
G1965262 NA other upstream 24154 24360437 ~ 24360985 (+)
G1964499 NA other upstream 308418 24076521 ~ 24076721 (+)
G1964177 NA other upstream 771374 23605934 ~ 23613765 (+)
G1963734 NA other upstream 1466453 22917946 ~ 22918686 (+)
G1965396 NA other downstream 174681 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 398077 24788926 ~ 24791594 (+)
G1967032 NA other downstream 1440526 25831576 ~ 25833321 (+)
G1967965 NA other downstream 2263855 26654905 ~ 26655336 (+)
LOC110505721 ccdc88c other downstream 2597789 26988390 ~ 27099710 (+)

Expression


Co-expression Network