LOC110505684 (LOC106611134)


Basic Information

Item Value
gene id LOC110505684
gene name LOC106611134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24447613 ~ 24449656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585070.2
AGCTCAGAGGCGCAGCagcagtgtgtcagtgtgagtgtgtgtgtgagagagaaaaagcgcgagagagagagagaggagaaaggagagacagagagagagattacttaATTGCTGCTTTGGTAACGGGAGAGCACGGAGCGAGGTTTTGCGCAATGGCTTTCCTCCTTTTTAAAATTAGTATACTTTATAGGCTACCTGCACTTTAAACTGTTCATGTACATGAAACACAAGTCTGTTGATTGCATTTCGACATTTTCGACGCCAAAAATAGCCTACGACAGCAGGAAAGATGTGGACTATACCCAAACCCCGATATAGGAACTGCAACAGTTTGGACACGAGGGATGAAGCCGAGATAGCCGTGAACATTGGCGGGGTGAAGCTCGTTTTATACGGGGATGTGCTTAACCGCTACCCGGAGAGTCGACTTGCAGAACTTATCAACTGCTCAACTCTGAATTATGACATTATCTACTCACTTTGTGATGACTACGACCCCGGTAAAAGGGAGTTTTATTTTGACCGGGATCCTGACGCTTTCAGATGTATCATTGACGTGTATTACTTCGGTGAGATTCACATCAAACGAGGAATCTGTCCCATTTGTTTTATTAAAGAGATGGAATTCTGGAAAATTGACCAAAGCTATTTGGACGAGTGCTGTAAAAGTGACTTGACTGAAAAAGAGGAAGAGCTGGCTGAGATTGCCAACAAAGTGAAGCTTATCTTGGATGATCTAGATGTGGTCCCTTCTGTCAACCGCTCAGCGCGGTACCAAAAGTTCCTTTGGAAACTCATGGAGAAACCAGAGTCCTCATTGCCTGCGCGCATTATCGCCATTGCATCTTTCCTCTTTGTCCTTGTGTCATCCTTGGTGATGTGCGTGGGTACCATTCCAGAAGTCCAAATGGAGGACGACGAGGGAGACCTTGTGGAACACCCAACGCTGGAGGCCATCGAGACAGCCTGCATAGGCTGGTTCACCGTAGAATATCTGCTGCGTTTTATGTCCTCCCCAAACAAACTGCACTTTTTCCTATCCTTTATGAACATAATAGACTTCATGGCTATCATGCCCTTTTACGTGGTGCTGACCCTAACTTACCTGGGTACGACCATGATGGATCTGGCCAAGGTCCAGCAAGCGGTCCAGGCGCTTCGCATCATGCGTATTGCCCGGATCTTCAAACTGGCGCGTCACTCCTCCGGGCTACAGACTCTCACCTATGCGCTGAAGAGGAGTTTCAAAGAGCTGGGGTTGCTCCTTATGTACATGGGCATAGGGATATTCGTGTTTTCAGCACTGGGCTACACCCTGGAGCAAAGCCACCCGGAGACCCTCTTCAGTAGCATCCCACAGTCCTTCTGGTGGGCTATTATCACCATGACGACCGTAGGCTATGGAGACATTTACCCCAAAACCACGCTCGGAAAGTGCAACGCAGCCATCAGCTTCCTGTGTGGGGTGATAGCCATCGCGTTGCCCATTCACCCCATTATCAACAACTTCGTTATTTTTTACAATAAACAGAGATTGCTCGAGACTGCGGCCAAGCACGAGCTGGAGCTCATGGAGTTGCAGTCTAGCGAGGACTCAATGGTGAAGGCCACGCGCAAGTCTGGCGCATTGGGCGCATTGGAGAGCTCTATGCGCCCCTCACGTAGTGATAATTCTATACCACTTATTGAGGAATCAACCAGGACTTTGAAGTCGAAAAAGTATTGCTCCGAAACAGAATCGTTTTAACTTGACATAGACATAGGCCTATTGTATAGTGACGCGTTTCAATTCCACGAGAAATTGGCTAGCTTCTACACAGTAAATCAAGGATAGTTGAAATCACAGTGTTAAAAACTTTTGGGTTAAATTGACTCTACTGGGAGTTATTTTAACCCTCAAGAGAGTGATATTATCTGTGGAGTTAGTGTTGATAACTGGAGTTGATTGGGACAGAGTACTTTAGGAGCAACCAGAGACAAGgaattaaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccaca

Function

NR:

description
potassium voltage-gated channel subfamily F member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04899 KCNF1, KV5.1; potassium voltage-gated channel subfamily F member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585070.2 True 2044 mRNA 0.47 1 24447613 24449656

Neighbor

gene id symbol gene type direction distance location
utp25 diexf coding upstream 56563 24385139 ~ 24391050 (+)
zgc:123321 yipf5 coding upstream 69350 24375827 ~ 24378263 (+)
LOC110505678 LOC106611137 coding upstream 92310 24313474 ~ 24355303 (+)
LOC110505676 LOC106610929 coding upstream 157951 24235278 ~ 24289662 (+)
LOC110505673 NA coding upstream 366868 24078721 ~ 24080745 (+)
slc66a3 pqlc3 coding downstream 54616 24504272 ~ 24507841 (+)
LOC110505689 pdss2 coding downstream 145930 24595586 ~ 24617110 (+)
LOC110505690 LOC106611127 coding downstream 176962 24626618 ~ 24631359 (+)
LOC110505692 gdf7 coding downstream 193392 24643048 ~ 24648427 (+)
hs1bp3 hs1bp3 coding downstream 322158 24771814 ~ 24775421 (+)
G1965304 NA non-coding upstream 13511 24433853 ~ 24434102 (+)
G1965300 NA non-coding upstream 17747 24429476 ~ 24429866 (+)
G1965292 NA non-coding upstream 26535 24420710 ~ 24421078 (+)
G1965188 NA non-coding upstream 49604 24396266 ~ 24398009 (+)
G1965273 NA non-coding upstream 66143 24381163 ~ 24381470 (+)
G1965315 NA non-coding downstream 1390 24451046 ~ 24452013 (+)
G1965319 NA non-coding downstream 8375 24458031 ~ 24458266 (+)
G1965326 NA non-coding downstream 15479 24465135 ~ 24465432 (+)
G1965330 NA non-coding downstream 24120 24473776 ~ 24474075 (+)
G1965333 NA non-coding downstream 27471 24477127 ~ 24477515 (+)
G1965263 NA other upstream 86131 24361088 ~ 24361482 (+)
G1965262 NA other upstream 86628 24360437 ~ 24360985 (+)
G1964499 NA other upstream 370892 24076521 ~ 24076721 (+)
G1964177 NA other upstream 833848 23605934 ~ 23613765 (+)
G1963734 NA other upstream 1528927 22917946 ~ 22918686 (+)
G1965396 NA other downstream 116075 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 339471 24788926 ~ 24791594 (+)
G1967032 NA other downstream 1381920 25831576 ~ 25833321 (+)
G1967965 NA other downstream 2205249 26654905 ~ 26655336 (+)
LOC110505721 ccdc88c other downstream 2539183 26988390 ~ 27099710 (+)

Expression


Co-expression Network