slc66a3 (pqlc3)


Basic Information

Item Value
gene id slc66a3
gene name pqlc3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24504272 ~ 24507841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585080.2
TACATTTGTTTTACTACGGATGGGACTtggggtaaaaaaacaacaacatagggGTGGTGTAATGTGTGCGGAAGTGAAATCAAAACTCCGTGCAAGCCACCTCGATCCTGTCATATTTAGTAGTCGTTAGTGATCTACGAGCCAAAAGTCGATAGATCTTCATCTAATTGTGAAATCATGGAATCCGACAAGGTACTACATATCGCTAACTTTAGCACACTGTTTGTGTGCATGGTGCTAAAGTTTCCGCAAATATTTGTTTTAATGCGCGCGAAATCGACAACGGGTGTCAGCCTCAACAGTCTTCTGCTGGAGCTAACCGGGTTCATTGTGTTTGTCACCTACCAGATGTACTATGACTACCCACCCCCAACCTACTTGGAGTACCCCATCCTCATTGCTCAAGatgtcatcctcctcctcttgatTCTACATTACAATGGCAGCCTGAAGCAGAGTCTGATCTATGCAGTTGTGTTTGTGGGAGGCTGGCAACTACTCACTGTGCAGAAGTGGATAATTGATTTGGCCATGaGCCTGTGTACATTCATCAGTGCTGGCAGTAAATTTGCCCAGCTCCAATGCCTGTGGCAGTCCAAGGACTCAGGGCAGGTTAGCGCCCTCTCCTGGGGTATGGCTACCTACACATGTTTTGCAAGGATTTACACCACCAGTGTGACAACTGGAGACATGCAGGTTCTGGTGCGATTTATTGTCATGGCACTGCTGAATTCATGGGTGCTAGCTACAGTCTTGTACTACAGGAAAAGGGCTGGGGAAGTACAGAAGAAGCAGGATTAAGTCTCCTGTCACAAACAGTTATTACCTCCAATGTCTAAAACCGGACAATTTGTCTGCACTCCCTCTTCTTTCAGTGTTTAATTTCACCCAGACATGAAGCTGAGAACTGGACTGTGTGTGACAAATGGACAGGTGTCAACCCTTTTGGCAAACCAACCATTCTGATATCAAAATGGTTttcttttctaaaatttttggtACCATTCTTTTAAACATTCCATTTGGCTGTCTTCTCAGTTTGACAACAGTTCAAGTTAGTACAAAAGATTAAAAAAATGTGTTGAGTTAATATATTGGGTGTGTTAATCCTTTCTGTTGAGATGCAGATGTTTCTCAGGATAAAACATTAAACAGCTGTAATTTTCAATTTATTTTCTAAAGATTTTAATCAATAAACCATACCACCTTT

Function

symbol description
pqlc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; lower jaw molar; olfactory epithelium; and upper jaw molar. Orthologous to human SLC66A3 (solute carrier family 66 member 3).

NR:

description
PQ loop repeat-containing protein 3 precursor

GO: NA

KEGG:

id description
K23680 PQLC3, SLC66A3; solute carrier family 66, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585080.2 True 1210 mRNA 0.42 7 24504272 24507841

Neighbor

gene id symbol gene type direction distance location
LOC110505684 LOC106611134 coding upstream 54616 24447613 ~ 24449656 (+)
utp25 diexf coding upstream 113222 24385139 ~ 24391050 (+)
zgc:123321 yipf5 coding upstream 126009 24375827 ~ 24378263 (+)
LOC110505678 LOC106611137 coding upstream 148969 24313474 ~ 24355303 (+)
LOC110505676 LOC106610929 coding upstream 214610 24235278 ~ 24289662 (+)
LOC110505689 pdss2 coding downstream 87745 24595586 ~ 24617110 (+)
LOC110505690 LOC106611127 coding downstream 118777 24626618 ~ 24631359 (+)
LOC110505692 gdf7 coding downstream 135207 24643048 ~ 24648427 (+)
hs1bp3 hs1bp3 coding downstream 263973 24771814 ~ 24775421 (+)
LOC110505697 ypel5 coding downstream 281085 24788926 ~ 24791594 (+)
G1965341 NA non-coding upstream 19679 24484084 ~ 24484593 (+)
G1965340 NA non-coding upstream 20324 24482729 ~ 24483948 (+)
G1965337 NA non-coding upstream 23923 24480127 ~ 24480349 (+)
G1965334 NA non-coding upstream 26107 24477887 ~ 24478165 (+)
G1965333 NA non-coding upstream 26757 24477127 ~ 24477515 (+)
G1965394 NA non-coding downstream 54915 24562756 ~ 24565204 (+)
G1965399 NA non-coding downstream 63018 24570859 ~ 24571071 (+)
G1965401 NA non-coding downstream 65821 24573662 ~ 24573981 (+)
G1965402 NA non-coding downstream 67049 24574890 ~ 24575169 (+)
G1965693 NA non-coding downstream 126853 24634694 ~ 24635019 (+)
G1965263 NA other upstream 142790 24361088 ~ 24361482 (+)
G1965262 NA other upstream 143287 24360437 ~ 24360985 (+)
G1964499 NA other upstream 427551 24076521 ~ 24076721 (+)
G1964177 NA other upstream 890507 23605934 ~ 23613765 (+)
G1963734 NA other upstream 1585586 22917946 ~ 22918686 (+)
G1965396 NA other downstream 57890 24565731 ~ 24567147 (+)
G1967032 NA other downstream 1323735 25831576 ~ 25833321 (+)
G1967965 NA other downstream 2147064 26654905 ~ 26655336 (+)
LOC110505721 ccdc88c other downstream 2480998 26988390 ~ 27099710 (+)

Expression


Co-expression Network