hs1bp3 (hs1bp3)


Basic Information

Item Value
gene id hs1bp3
gene name hs1bp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24771814 ~ 24775421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585087.2
TTAGTGTAGCAGGGCTGCACGCAAAAGCCATTAAGGCAAAGACGGATGGGCTATCAGCTGATCATAGCCAATGTAGATGATGACCTAGTTACCTAGCTTTGCTGTCGAAACAAGCTAGTTTTTACTTGATTTGAGCTTGTTCTGCTACTGACATATGCCTCGACTTACTATCAAGGAGTCGATGTGCCTCCTTCCCAGACCACAAGCAACTGCAAAATATTCGCAACTCACCGCTCGTGCTGTGCAGAACGAGTGCAGCAGCgcgcttttattttgaaggctaaaaCCGGAAGTCCCTGTTTTGTATGCCTGCAGCCGAAACAGTATCTAGTTCCCATCCCATGACTTGTATCATAACAGTAGGGAATGGGGGTGGTCAGCTTGATTACAGataaacagagacaggacagcaATCTTACCACAATGCCAGACGGACTTATTACAAGCAGGCTGTTGCAGAATGAGGTGACAGGCATAGATCTGCAGGTGCCTCTTTACCAGGAGATCCGTGGTACCATGATGACAGGTCATGTGGAGTACCAGATAATTGTGGTGACTCGGCTGGCTGCCTTCAAATCCGCCAAGCACAAACCTGAAGACATTGTACAGCTGGTGGTTTCAAAGAAATACAGTGAAATTGATGAGTTTTACTACAGACTCATGGGTCAATATCCGAAGATCACCTTACCAGCCATGCCTCGCAAGGCCATGTTTGTAGGCGAGGCAGACATCCGGGAGCGTAGGGTGGCCTTTGACGAACTGGTCAAGTTCATCTCCAAGAATTCTACACTTGCTACTTGCCCAGAGGTGTTGGAGCTCTTAGGGGCGAAGTCCACAATGGCAGATTCGAAAACCAGGAACGTTGCAGATTGGCAGGACCAGGATAAAGAAGAAGGCTTTAATTTCTTTGAAAGTGAGGAGACCCCTGCTGCTGCTGCGAAAGTAACCAAACATGTTCCACCAGTGAAACCTAGGGAAGAGGAGCAGGAACATGACGATGATGATCAGTACCTTGGACCTCTAGGCAATTTAAAGTGCACGAGgcagaagaagaaaaagcctCCACAGGCTAAAGTGGCTACCCAACCTAAGTTATCTCTGTTTGATGAGGCTGAGGATATAGATGACGACTTGTTTCAACCTGCAGCCAAAGACAGCAACGTTAAGCTGTTTAAGGAGCCAGACTTGATGTGGAATGTGAAGTTGGGGGACCCTTTACTACTTCCAACAGCATACAAGGATGTGGCATCTGCAGATTCAGGACTGGATGAGGATACAGATGAACTTTTCAGGATAGAAGACAACTTTGACAAGCTCCTCCAGGTGAAGAAAAGTATCAAGGCAAGGCCAGTTCCTGCCCCCAAACCCAAACTGGCCCCAAAGCCAAAACTGCCTGTGAAGCCCTCCTCTCTAGTCTCAGGTGGTAGGGGCCCAGTTGTGGGTGTTCTTCCAGTTGCAGATGAGGTGAAGGATCAAATCGACATTCTCAAGTATATCCAACAAAATGAGTCTACATCTATTGATGATCTGGATCTGTTTTAATTGCCAACTAAATGATAGTAACTGATTAGGACTCATGAAGTTGTTAGCAGGCTACACAGGAAAAATTCTGCCTATGATTATATTTTGACATTACCCATATTATTCCATCAACGATGACTTTTGGAAGTCTGATTCTAATAAAAGTCTACTGAACATGTGTAGTTACAATCAGTGCTGGAAATGGGCCTGTGTGGTATCATTTATTTTTAACCATATTGCTTTCCTACTTTTTATACTGAAAATGCTGTATACATTACCATGATTGAGTGGTTCCAAATGCAATGACAAAGAAATCTAACTCATTTTTGTAATAACTGCACAGTAATTTTGGATTTATCATACTAAATGTCTTGTCGGAACAtattaatgtaaaaaaataattaaacaacAAATTATCTTTTCTCTTTTTTTCACCAAATAAAGTCTACAATTTTACAAAA

Function

symbol description
hs1bp3 Predicted to enable phosphatidylinositol binding activity. Acts upstream of or within negative regulation of autophagy. Human ortholog(s) of this gene implicated in essential tremor 2. Orthologous to human HS1BP3 (HCLS1 binding protein 3).

NR:

description
HCLS1-binding protein 3

GO: NA

KEGG:

id description
K24094 HS1BP3; HCLS1-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585087.2 True 1982 mRNA 0.43 7 24771814 24775421

Neighbor

gene id symbol gene type direction distance location
LOC110505692 gdf7 coding upstream 123387 24643048 ~ 24648427 (+)
LOC110505690 LOC106611127 coding upstream 140455 24626618 ~ 24631359 (+)
LOC110505689 pdss2 coding upstream 154704 24595586 ~ 24617110 (+)
slc66a3 pqlc3 coding upstream 263973 24504272 ~ 24507841 (+)
LOC110505684 LOC106611134 coding upstream 322158 24447613 ~ 24449656 (+)
LOC110505697 ypel5 coding downstream 13505 24788926 ~ 24791594 (+)
LOC110504214 LOC106601609 coding downstream 269441 25044862 ~ 25111937 (+)
LOC110504215 LOC106611119 coding downstream 342738 25118159 ~ 25185867 (+)
LOC110505701 LOC106611118 coding downstream 446577 25221998 ~ 25329784 (+)
LOC110505705 vdac2 coding downstream 800541 25575962 ~ 25576971 (+)
G1965763 NA non-coding upstream 169 24771350 ~ 24771645 (+)
G1965747 NA non-coding upstream 22277 24747717 ~ 24749537 (+)
G1965746 NA non-coding upstream 52847 24714295 ~ 24718967 (+)
G1965744 NA non-coding upstream 53824 24712035 ~ 24717990 (+)
G1965721 NA non-coding upstream 98936 24672642 ~ 24672878 (+)
G1965791 NA non-coding downstream 46792 24822213 ~ 24824144 (+)
G1965966 NA non-coding downstream 109592 24885013 ~ 24885228 (+)
G1965971 NA non-coding downstream 113069 24888490 ~ 24888769 (+)
G1965998 NA non-coding downstream 135887 24911308 ~ 24911640 (+)
G1966020 NA non-coding downstream 153237 24928658 ~ 24928873 (+)
G1965396 NA other upstream 204667 24565731 ~ 24567147 (+)
G1965263 NA other upstream 410332 24361088 ~ 24361482 (+)
G1965262 NA other upstream 410829 24360437 ~ 24360985 (+)
G1964499 NA other upstream 695093 24076521 ~ 24076721 (+)
G1964177 NA other upstream 1158049 23605934 ~ 23613765 (+)
G1967032 NA other downstream 1056155 25831576 ~ 25833321 (+)
G1967965 NA other downstream 1879484 26654905 ~ 26655336 (+)
LOC110505721 ccdc88c other downstream 2213418 26988390 ~ 27099710 (+)
G1970001 NA other downstream 3638179 28413600 ~ 28413919 (+)

Expression


Co-expression Network