LOC110504217 (LOC106601399)


Basic Information

Item Value
gene id LOC110504217
gene name LOC106601399
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26582859 ~ 26623165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583031.2
TCCAGATCAACTTGGCCCCTCCCAAGAAGGTCCAATCAGGGATGATCCAGTCTAGCCTTGTCCAGGCCAGTGAGGCGGCCATGCAGAACCCCATGGGCTGTAATTCCAAGGGGGCCAATGGCCACTGCCCCTTACCTCGGCTCTCCATCTCCTCCCGCTCCGCCAGCGTGGTGGCCAGCATGGACACAACCGGCGACCTCTCGGCCCTCCACTCTGTGATGAAGTGGAAGACGGTGGTGTCGGTTTTTGTGGTGGTTGTAGCCTTCTTGGTGGGGGGTGGCCTGGCCTTCCGTGCCCTGGAGCAGCCCTTCGAGAGCAACCAGAAGGACAGCATCACCCTAGAAATAACGTTGTTCCTGCGGAGGCACCCATGTGTCACGCCTGCTGAGCTGGAAGCACTGATCAAGCATGCCATAGATGCTGTCAGTGCAGGAGTCAGTCCGATCGGAGACACATCTTACAACTCCAGTCACTGGGACCTGGGAAGTGCCTTCTTCTTTGCTGGGACCGTGATTACAACGATAGGTTACGGGAACATAGCTCCCAGTACGGAGGGAGGGAAGATCTTCTGCATCCTGTACGCCTTATTTGGCATCCCACTGTTTGGGTTCCTCCTGGCTGGCATTGGAGACCAGCTGGGGACCATATTTGTCAAGAGCGTCTTGAGGGTGGAGAAGATATACAGGCAAAAACAGAAAGAAATAAGCCAGACCAAAATCAGAGTTACCTCCACCATACTCTTCATCCTGGCCGGGTGCATAGTCTTCGTCGGTGTCCCAGCGGTGATTTTCAAACATTTCGAGGGATGGACGACTCTGGATGCTATCTACTTTGTTGTCATTACGCTAACAACGATTGGCATCGGGGACTATGTGGCAGGTGGGGATCGGAAGATCAAGTACATGAAGTGGTACAAGCCCCTGGTCTGGTTCTGGATCCTGGTGGGTTTGGCCTACTTCGCTGCGGTCCTGAGCATGATCGGAGACTGGCTCAGAGTGCTTTCTAAAAAGACCAAAGAGGAGGTGGGGGAGTTCAAGGTCCATGCTGCTGAGTGGAAGGCAAATGTGCAGAATGAGTTCCGGGAGACGCGTCGGCGGCTGAGTGTGGAGATCCACGACAAGTTGCAGCGGGCCGCCACCATCCGCAGCATGGAGCGCAGGCAGCTGGGCCTGGAGCAGAGGACCCACTCGCTGGACATGTTCTCCCCACAGAAGAGGGCCTTGTTTGTCAGCCTGGACCAGGGCTGCTATGAGACCTCCTCCCAGGAGAGCATTGACACCAAGCTGAATAACTTGAGGTTGCGAGGGGCAGGGGAGCTTTGTTATGAGCAGCGGAGAGGCAGCGAGCAGACCCAGCAGGCCTCATCAGAGGACGATAAGCTCTTCAACCTCCGCTTCCGTTCCCTCACCAAGCTAACCAAGAGACCCAAGAACCGTGACCTGAAGAGTAACATTCCTGATGATGTGCGGAGGGCCTGCGAGGCaatggagaagagggaggaggacatggaggaggtgaaggaggaggaaaggggCGAGAGGAAGAAGGGCAACACCAGCTTGACAAATTTAGAATACGCAGACGAGCGCATTAATAAACTGAACGGTTTTGTACTGGCTCAGGCCAAAGAGAGGGAGAACGCTAGAATGTTGGAAGGAAGAGAGCTTGAGTTCCAGCTAGAGTGTGCAGATACcgagactgagtgagagagaaCTTTTTTTATGTCTCAAAATGTGCCTTGCTGTTGTTTCTATGCTTAGACTGTTCTGAGTAAATGGGACAGTTCTGTTCAAAATCAATCACTGTGCCCTAGCAATGTAAAGACTAATGTTGCCTAaaagtggagagaaaagagactAGGCTAGGGTCTAATTTGGTGAAGACCTATTTTATCTTGGATAGTACTGGACCTACCAGAATCTCCTTTCCTTTTTAAAGAACACCCACTTGCTACCcagccccaccccaccccccaacAATATCCAACAAAAAAGACGCAACGTGGGATAATCTTCTCCTTGTTAACTGAAGGTTAGCAAGTAACCCAGTGAACTAGTGTTTCACCATCCCAATGAGATTTGCACCAACTATATACATCtttacttattattattaatttcaCACCAGATATTTTTAGCCCAGGCTGCTGAACAAATATGACTTGAGGGGGAACTGGATCGATATACAATGTGTGCATTTACTGAAATTATGTGTACAATTATTGATACATTGGTTATGAAATGTAGCCCTAGGATAATCTACTAATCTTTTATAACAAAACCCTCTGATTGTGTATGCTTTTGACACTCATTTGGTGTTCTAAAGCTGTCAATATAAAGTATAGAAACTTTAAAGTTCAGGGCCAGATGTCCTGTTGTAATTTCAAACAAATGAAATGTACTGCATTAACATTTAGTACTGTTGAAGTGGAACATCTAGAAAATGAAGGGATTTTAAGGGCTGGGGTttaaaaacaattttaaaaaatactTATGAGGTTTTGATGGCCATTGAACCCAATTCATTTCTGTACATCATAAGAATGATTTATTAGTTAGacattttgttactttgttcTTTGCTTCAAGATTATTTGATGAATTATTTTACAcagcatacagtatgtatgtgtgtactgtagttTCCTGCAGTTtaatgttttctttcacagtaAATGGAATATGATTTTTCTTGTCCACACAATGTGCTGTGCACTGTATGTGTTGGTGTTTTCCCCTCACACAGTCAGACGATGCATTGCATTCACCCAGACCAGGGAAGGAACTTACCCTATGGCTGTATTCACTTCGCAGATCAATGTTTTTGGTCTTTTGCTATGTCTTTGTCTCATTGATGTTTTACTCAATGAAATGTTTGTCAATTTGTTCCAAtttgctatttatattttttgttcatttttaTTTTGCCCTATTACGGAATGGAGGTCTAGTAATCAGAAACACTTTTTGAATGGTGGCTATACAAACTTTACTCTGTCAAATACAATTACAGAATGTTTTCTGGTATGAATGAGGTAGCCTCCCCGCTGAGATTCGGATTAAAGCAGATTTTTCTAATTCATGATGTAACAAATTATTATTGGATTAGTATTTGGAACATTGAATTCTGTCTTTGGTCCCTGTGGTCTTCTGCATAGTCAAAGAAGGAGCTGTTGCTGTAGGGACGTAGGCTCACTCGTCATATCAAAACCACAACCAACAATACTGGATAGATTGCAAAGCATGTAGTTCTGATAATGAATAACTACTGTTTGTAACCTCTAAAAAAATGGCTTACCATGACAATGACCTTTCTAAGAACCCGAGTGGATTGTCTTTGCTCAGTCTTTTTTGTTGTTCACAATTTATTTGTGCAAACATTGCATCAAATGTAGTGAGTGCCTTtctgggaataaatatcactaaAGAAAATTAAGCTACTTTTGTGAAATAGTTTCTTATCAAGTGTATCATCTGTGACTTCATTCCCATGTGTCTCTTAAAGTCCACAACCACCATTATTTCCAAACCTGTGATTAACATAATTGGATTTCTGATTAAGGAAATTATGAGATTTGACTTCCAGAACAGTTTCACTTAGCTTTGCTTTCCGGTCACATTGTTGACCTTGGGTGAACTGTAAGTAAATCCAGGAGAAATTGTGATGCCTATATGATCATAGTCAGTGGCGActtgtcattcagggcaggtggttTAGCATTAATACATGCCACATATGAGTTTGcaaacaaaacaattaaatacAAAATTGGatttaataaagccgcata
>XM_036962948.1
cctcactagccagatgaagctagctggctgcttataatgtTGAGCAACTTGGTTGAGTTAcaggctagctatttattttcatgaactgaagttcaatttcaataggcgaacaacaagtgtcaacctagctaatactcacaaggattcctaaatcattgctaagaattgtgaaaatgactgcagtttctacaggtcattgttttcaggctggttgtattggtgcaggctaggtaccaagctaaagctagctaccacagaagttgcggtcgaacaaattaAGCTTTATTACCAACACGGTATTGTAAAAACATCGTTCATGTCCGGTGTTttcttgtttgcagacttttttggacagctttgacagtgttacagtatcttttttgacacgcaaagacccaaacagcattccatagtatgtatgtcgtgaagctaatagagCGGCTAGTGAAAGCTAAGTACATTTCCACCTTAGACCTAACCAAGGGCTATTGGCAAGTCCCTTTAGTCCCTGAGGATCGCCAAAAGATCGCCTTTGCCATGCCGGAGGGGCTTTTCCAATACGTCTGGATGCTGTTCGGTCTACATTGAGAGGCGGCAATGTTCCAACGACTGATGGTTAACCTGCTTAGACCCCATCAGGCTTACACAGCCCCCTATATTGACAATGCTGTCATACACACTGAGGACTGGGACGACCACCTAAACAAGCATGCCATAGATGCTGTCAGTGCAGGAGTCAGTCCGATCGGAGACACATCTTACAACTCCAGTCACTGGGACCTGGGAAGTGCCTTCTTCTTTGCTGGGACCGTGATTACAACGATAGGTTACGGGAACATAGCTCCCAGTACGGAGGGAGGGAAGATCTTCTGCATCCTGTACGCCTTATTTGGCATCCCACTGTTTGGGTTCCTCCTGGCTGGCATTGGAGACCAGCTGGGGACCATATTTGTCAAGAGCGTCTTGAGGGTGGAGAAGATATACAGGCAAAAACAGAAAGAAATAAGCCAGACCAAAATCAGAGTTACCTCCACCATACTCTTCATCCTGGCCGGGTGCATAGTCTTCGTCGGTGTCCCAGCGGTGATTTTCAAACATTTCGAGGGATGGACGACTCTGGATGCTATCTACTTTGTTGTCATTACGCTAACAACGATTGGCATCGGGGACTATGTGGCAGGTGGGGATCGGAAGATCAAGTACATGAAGTGGTACAAGCCCCTGGTCTGGTTCTGGATCCTGGTGGGTTTGGCCTACTTCGCTGCGGTCCTGAGCATGATCGGAGACTGGCTCAGAGTGCTTTCTAAAAAGACCAAAGAGGAGGTGGGGGAGTTCAAGGTCCATGCTGCTGAGTGGAAGGCAAATGTGCAGAATGAGTTCCGGGAGACGCGTCGGCGGCTGAGTGTGGAGATCCACGACAAGTTGCAGCGGGCCGCCACCATCCGCAGCATGGAGCGCAGGCAGCTGGGCCTGGAGCAGAGGACCCACTCGCTGGACATGTTCTCCCCACAGAAGAGGGCCTTGTTTGTCAGCCTGGACCAGGGCTGCTATGAGACCTCCTCCCAGGAGAGCATTGACACCAAGCTGAATAACTTGAGGTTGCGAGGGGCAGGGGAGCTTTGTTATGAGCAGCGGAGAGGCAGCGAGCAGACCCAGCAGGCCTCATCAGAGGACGATAAGCTCTTCAACCTCCGCTTCCGTTCCCTCACCAAGCTAACCAAGAGACCCAAGAACCGTGACCTGAAGAGTAACATTCCTGATGATGTGCGGAGGGCCTGCGAGGCaatggagaagagggaggaggacatggaggaggtgaaggaggaggaaaggggCGAGAGGAAGAAGGGCAACACCAGCTTGACAAATTTAGAATACGCAGACGAGCGCATTAATAAACTGAACGGTTTTGTACTGGCTCAGGCCAAAGAGAGGGAGAACGCTAGAATGTTGGAAGGAAGAGAGCTTGAGTTCCAGCTAGAGTGTGCAGATACcgagactgagtgagagagaaCTTTTTTTATGTCTCAAAATGTGCCTTGCTGTTGTTTCTATGCTTAGACTGTTCTGAGTAAATGGGACAGTTCTGTTCAAAATCAATCACTGTGCCCTAGCAATGTAAAGACTAATGTTGCCTAaaagtggagagaaaagagactAGGCTAGGGTCTAATTTGGTGAAGACCTATTTTATCTTGGATAGTACTGGACCTACCAGAATCTCCTTTCCTTTTTAAAGAACACCCACTTGCTACCcagccccaccccaccccccaacAATATCCAACAAAAAAGACGCAACGTGGGATAATCTTCTCCTTGTTAACTGAAGGTTAGCAAGTAACCCAGTGAACTAGTGTTTCACCATCCCAATGAGATTTGCACCAACTATATACATCtttacttattattattaatttcaCACCAGATATTTTTAGCCCAGGCTGCTGAACAAATATGACTTGAGGGGGAACTGGATCGATATACAATGTGTGCATTTACTGAAATTATGTGTACAATTATTGATACATTGGTTATGAAATGTAGCCCTAGGATAATCTACTAATCTTTTATAACAAAACCCTCTGATTGTGTATGCTTTTGACACTCATTTGGTGTTCTAAAGCTGTCAATATAAAGTATAGAAACTTTAAAGTTCAGGGCCAGATGTCCTGTTGTAATTTCAAACAAATGAAATGTACTGCATTAACATTTAGTACTGTTGAAGTGGAACATCTAGAAAATGAAGGGATTTTAAGGGCTGGGGTttaaaaacaattttaaaaaatactTATGAGGTTTTGATGGCCATTGAACCCAATTCATTTCTGTACATCATAAGAATGATTTATTAGTTAGacattttgttactttgttcTTTGCTTCAAGATTATTTGATGAATTATTTTACAcagcatacagtatgtatgtgtgtactgtagttTCCTGCAGTTtaatgttttctttcacagtaAATGGAATATGATTTTTCTTGTCCACACAATGTGCTGTGCACTGTATGTGTTGGTGTTTTCCCCTCACACAGTCAGACGATGCATTGCATTCACCCAGACCAGGGAAGGAACTTACCCTATGGCTGTATTCACTTCGCAGATCAATGTTTTTGGTCTTTTGCTATGTCTTTGTCTCATTGATGTTTTACTCAATGAAATGTTTGTCAATTTGTTCCAAtttgctatttatattttttgttcatttttaTTTTGCCCTATTACGGAATGGAGGTCTAGTAATCAGAAACACTTTTTGAATGGTGGCTATACAAACTTTACTCTGTCAAATACAATTACAGAATGTTTTCTGGTATGAATGAGGTAGCCTCCCCGCTGAGATTCGGATTAAAGCAGATTTTTCTAATTCATGATGTAACAAATTATTATTGGATTAGTATTTGGAACATTGAATTCTGTCTTTGGTCCCTGTGGTCTTCTGCATAGTCAAAGAAGGAGCTGTTGCTGTAGGGACGTAGGCTCACTCGTCATATCAAAACCACAACCAACAATACTGGATAGATTGCAAAGCATGTAGTTCTGATAATGAATAACTACTGTTTGTAACCTCTAAAAAAATGGCTTACCATGACAATGACCTTTCTAAGAACCCGAGTGGATTGTCTTTGCTCAGTCTTTTTTGTTGTTCACAATTTATTTGTGCAAACATTGCATCAAATGTAGTGAGTGCCTTtctgggaataaatatcactaaAGAAAATTAAGCTACTTTTGTGAAATAGTTTCTTATCAAGTGTATCATCTGTGACTTCATTCCCATGTGTCTCTTAAAGTCCACAACCACCATTATTTCCAAACCTGTGATTAACATAATTGGATTTCTGATTAAGGAAATTATGAGATTTGACTTCCAGAACAGTTTCACTTAGCTTTGCTTTCCGGTCACATTGTTGACCTTGGGTGAACTGTAAGTAAATCCAGGAGAAATTGTGATGCCTATATGATCATAGTCAGTGGCGActtgtcattcagggcaggtggttTAGCATTAATACATGCCACATATGAGTTTGcaaacaaaacaattaaatacAAAATTGGatttaataaagccgcata
>TU2249847
ctggctgcttataatgtTGAGCAACTTGGTTGAGTTAcaggctagctatttattttcatgaactgaagttcaatttcaataggcgaacaacaagtgtcaacctagctaatactcacaaggattcctaaatcattgctaagaattgtgaaaatgactgcagtttctacaggtcattgttttcaggctggttgtattggtgcaggctaggtaccaagctaaagctagctaccacagaagttgcggtcgaacaaattaAGCTTTATTACCAACACGGTATTGTAAAAACATCGTTCATGTCCGGTGTTttcttgtttgcagacttttttggacagctttgacagtgttacagtatcttttttgacacgcaaagacccaaacagcattccatagtatgtatgtcgtgaagctaatagagCGGCTAGTGAAAGCTAAGTACATTTCCACCTTAGACCTAACCAAGGGCTATTGGCAAGTCCCTTTAGTCCCTGAGGATCGCCAAAAGATCGCCTTTGCCATGCCGGAGGGGCTTTTCCAATACGTCTGGATGCTGTTCGGTCTACATTGAGAGGCGGCAATGTTCCAACGACTGATGGTTAACCTGCTTAGACCCCATCAGGCTTACACAGCCCCCTATATTGACAATGCTGTCATACACACTGAGGACTGGGACGACCACCTAAACAAGCAGTTAACTGTAT

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase homolog

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583031.2 False 3790 mRNA 0.45 6 26582859 26623165
XM_036962948.1 False 4091 mRNA 0.43 6 26596244 26623165
TU2249847 True 698 lncRNA 0.43 2 26596267 26614385

Neighbor

gene id symbol gene type direction distance location
LOC110505712 LOC106611156 coding upstream 48800 26527650 ~ 26534059 (+)
LOC110505710 spred1 coding upstream 62476 26437115 ~ 26520383 (+)
LOC110504216 NA coding upstream 493495 25999701 ~ 26089364 (+)
LOC110505705 vdac2 coding upstream 1005888 25575962 ~ 25576971 (+)
LOC110505701 LOC106611118 coding upstream 1253075 25221998 ~ 25329784 (+)
LOC118944312 NA coding downstream 278612 26901777 ~ 26904037 (+)
LOC110505720 LOC106611151 coding downstream 328975 26952140 ~ 26953607 (+)
LOC110505721 ccdc88c coding downstream 365225 26988390 ~ 27099710 (+)
LOC110505722 LOC106611215 coding downstream 476508 27099673 ~ 27101550 (+)
LOC110505726 psmc1 coding downstream 1041832 27664997 ~ 27670414 (+)
G1967831 NA non-coding upstream 43589 26539151 ~ 26539270 (+)
G1967714 LOC106613263 non-coding upstream 57075 26525433 ~ 26525784 (+)
G1967713 NA non-coding upstream 57488 26524739 ~ 26525371 (+)
G1967708 NA non-coding upstream 71051 26510688 ~ 26511808 (+)
G1967676 NA non-coding upstream 159791 26422776 ~ 26423068 (+)
G1967963 NA non-coding downstream 29633 26652798 ~ 26653149 (+)
G1967968 NA non-coding downstream 33983 26657148 ~ 26657459 (+)
G1967972 NA non-coding downstream 39844 26663009 ~ 26663238 (+)
G1967974 NA non-coding downstream 40377 26663542 ~ 26663792 (+)
G1967977 NA non-coding downstream 42009 26665174 ~ 26665388 (+)
G1967032 NA other upstream 749538 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 1791265 24788926 ~ 24791594 (+)
G1965396 NA other upstream 2015712 24565731 ~ 24567147 (+)
G1965263 NA other upstream 2221377 24361088 ~ 24361482 (+)
G1965262 NA other upstream 2221874 24360437 ~ 24360985 (+)
G1967965 NA other downstream 31740 26654905 ~ 26655336 (+)
G1970001 NA other downstream 1790435 28413600 ~ 28413919 (+)
G1971104 NA other downstream 2850955 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 3700348 30092455 ~ 30330735 (+)
G1967878 NA non-coding downstream 3600 26617985 ~ 26618186 (+)

Expression


Co-expression Network