Item | Value |
---|---|
gene id | LOC110505717 |
gene name | LOC106611162 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048589.1 |
NCBI id | CM023243.3 |
chromosome length | 47542702 |
location | 26910778 ~ 26925964 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
calphotin-like isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036962922.1 | False | 2344 | mRNA | 0.49 | 7 | 26910778 | 26919460 |
XM_021585109.2 | False | 2357 | mRNA | 0.49 | 8 | 26910778 | 26919574 |
XM_021585112.2 | False | 2215 | mRNA | 0.49 | 7 | 26910778 | 26919574 |
XM_021585110.2 | False | 2420 | mRNA | 0.50 | 8 | 26910778 | 26925964 |
XM_021585111.2 | True | 2278 | mRNA | 0.50 | 7 | 26910778 | 26925964 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110505716 | LOC106024658 | coding | downstream | 145368 | 26716542 ~ 26765410 (-) |
LOC110505715 | LOC106611159 | coding | downstream | 220829 | 26687049 ~ 26689949 (-) |
bdkrb1 | kinrec | coding | downstream | 235500 | 26673171 ~ 26675278 (-) |
LOC110504332 | LOC106589664 | coding | downstream | 244429 | 26636405 ~ 26666349 (-) |
spata7 | LOC106611158 | coding | downstream | 340328 | 26562132 ~ 26570450 (-) |
LOC110504334 | LOC106611214 | coding | upstream | 7439 | 26933403 ~ 26935735 (-) |
LOC110505719 | LOC106611163 | coding | upstream | 27610 | 26953574 ~ 26976842 (-) |
dglucy | cssa09h14orf159 | coding | upstream | 180038 | 27106002 ~ 27117207 (-) |
LOC110505724 | LOC106611166 | coding | upstream | 192149 | 27118113 ~ 27167033 (-) |
LOC110505725 | LOC106611167 | coding | upstream | 272827 | 27198791 ~ 27371614 (-) |
G1968573 | NA | non-coding | downstream | 19344 | 26891112 ~ 26891434 (-) |
G1968253 | NA | non-coding | downstream | 32269 | 26878254 ~ 26878509 (-) |
G1968247 | NA | non-coding | downstream | 37329 | 26872963 ~ 26873449 (-) |
G1968195 | NA | non-coding | downstream | 85594 | 26806665 ~ 26825184 (-) |
G1968037 | NA | non-coding | downstream | 197430 | 26713044 ~ 26713348 (-) |
G1968706 | ccdc88c | non-coding | upstream | 150981 | 27076945 ~ 27078539 (-) |
G1968743 | NA | non-coding | upstream | 249151 | 27175115 ~ 27175342 (-) |
G1968905 | NA | non-coding | upstream | 506074 | 27432038 ~ 27432341 (-) |
G1968920 | NA | non-coding | upstream | 519072 | 27445036 ~ 27445261 (-) |
G1968922 | NA | non-coding | upstream | 519473 | 27445437 ~ 27445663 (-) |
G1967882 | NA | other | downstream | 372070 | 26535364 ~ 26538708 (-) |
G1964728 | NA | other | downstream | 3482134 | 23425563 ~ 23428841 (-) |
G1964592 | LOC106569888 | other | downstream | 3688275 | 23221973 ~ 23222503 (-) |
G1964564 | NA | other | downstream | 3742665 | 23165032 ~ 23168113 (-) |
G1969699 | LOC100380709 | other | upstream | 1173957 | 28099921 ~ 28101436 (-) |
G1969724 | NA | other | upstream | 1217474 | 28143438 ~ 28143762 (-) |
G1970606 | NA | other | upstream | 1931976 | 28857940 ~ 28861987 (-) |
G1971357 | LOC106611199 | other | upstream | 2596796 | 29522760 ~ 29525046 (-) |
G1972454 | NA | other | upstream | 3056320 | 29982284 ~ 29982900 (-) |