LOC110504334 (LOC106611214)


Basic Information

Item Value
gene id LOC110504334
gene name LOC106611214
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26933403 ~ 26935735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583110.2
acatgctttgtaagtaggaaaacctgcaaaatcagcagtgtatcaaatacgtCAAAGACGTTGGTAGTAGATTAGGTGATAAGGCCAACTAACTTAGATCTGCAGAATCTCCCGTTGTTTACAATGGTCTGCCACCGATATGCAGGTCAAAGATAATATCACATTTTTATCACTTTTCTAATCAATAGTACTTGCAGTTCTTCCACTCAAGACAATAATATAAATGCACCACTCAGACAGAAGGATGTGGAAGACATCAGAGATGGAGCTCAAGAACAATGCGTCAAAATACCTGGTTGTGTGCTGTGTGTCTATGCTGCTGGGCCTGACAATAGCCAAAGGGGAggtaggggagaaggagaggtgtgAGGACATACTGACCATTCCTTCAGACTACTACAAGACTCCTTCAGAGGAATCAGAGGGAAACGGGAACATCAACACACGCTCCCTGTCCCCCTGGACCTGGAAACCCATTACAGTGAAGAACCGTATTCCTCCGACCATTTGGGAGGCCAAGTGCAGCTCTATGTACTGTGTCTACCCCACCAACAGCAGCCAGGCCGTGGGCTACCAGCAGAACTCTGTACCTATCTACCAGCAGGTCATGGTGCTCCATAGCTCAGCCACTAGGAAGTGCTACAACGTCGCCTTCCTGTCCGTGGCCGTGGGGTGCACCTGTGCCTGGGCAAGAACCTCTTGATGTTGTCTGCAGAACAGTATGTCTATGGTCTTTCTTTGTTTGGCTATTCATTTAATTCaatcaaaatgttatttaatGTATTTTAATTTAAAGCTTCCAAGAAAGTCCAATATTTGTTGATCCCACAAAGCCAGAAGAATTGACTGTGAATAATTGAGTAGAATTCAAGAAAAACATATTTATAAATGTTTTCCACTTGCGCAATAAAAGCATTTTAAAACCCC

Function

NR:

description
interleukin-17A-like

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583110.2 True 927 mRNA 0.44 3 26933403 26935735

Neighbor

gene id symbol gene type direction distance location
LOC110505717 LOC106611162 coding downstream 7439 26910778 ~ 26925964 (-)
LOC110505716 LOC106024658 coding downstream 167993 26716542 ~ 26765410 (-)
LOC110505715 LOC106611159 coding downstream 243454 26687049 ~ 26689949 (-)
bdkrb1 kinrec coding downstream 258125 26673171 ~ 26675278 (-)
LOC110504332 LOC106589664 coding downstream 267054 26636405 ~ 26666349 (-)
LOC110505719 LOC106611163 coding upstream 17839 26953574 ~ 26976842 (-)
dglucy cssa09h14orf159 coding upstream 170267 27106002 ~ 27117207 (-)
LOC110505724 LOC106611166 coding upstream 182378 27118113 ~ 27167033 (-)
LOC110505725 LOC106611167 coding upstream 263056 27198791 ~ 27371614 (-)
nrde2 nrde2 coding upstream 740835 27676570 ~ 27692575 (-)
G1968573 NA non-coding downstream 41969 26891112 ~ 26891434 (-)
G1968253 NA non-coding downstream 54894 26878254 ~ 26878509 (-)
G1968247 NA non-coding downstream 59954 26872963 ~ 26873449 (-)
G1968195 NA non-coding downstream 108219 26806665 ~ 26825184 (-)
G1968037 NA non-coding downstream 220055 26713044 ~ 26713348 (-)
G1968706 ccdc88c non-coding upstream 141210 27076945 ~ 27078539 (-)
G1968743 NA non-coding upstream 239380 27175115 ~ 27175342 (-)
G1968905 NA non-coding upstream 496303 27432038 ~ 27432341 (-)
G1968920 NA non-coding upstream 509301 27445036 ~ 27445261 (-)
G1968922 NA non-coding upstream 509702 27445437 ~ 27445663 (-)
G1967882 NA other downstream 394695 26535364 ~ 26538708 (-)
G1964728 NA other downstream 3504759 23425563 ~ 23428841 (-)
G1964592 LOC106569888 other downstream 3710900 23221973 ~ 23222503 (-)
G1964564 NA other downstream 3765290 23165032 ~ 23168113 (-)
G1969699 LOC100380709 other upstream 1164186 28099921 ~ 28101436 (-)
G1969724 NA other upstream 1207703 28143438 ~ 28143762 (-)
G1970606 NA other upstream 1922205 28857940 ~ 28861987 (-)
G1971357 LOC106611199 other upstream 2587025 29522760 ~ 29525046 (-)
G1972454 NA other upstream 3046549 29982284 ~ 29982900 (-)

Expression


Co-expression Network