LOC110505725 (LOC106611167)


Basic Information

Item Value
gene id LOC110505725
gene name LOC106611167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27198791 ~ 27371614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585125.2
ggggggggggggggggagagtgcgTTGTGGATATATTTACATCAAATTCTACATGGCCTCTGCCAGGATGTACCTTATAACGAGATTCATTCTGATCTCCCTGATTTGGAAGAGCAGCCTGGCACTTTTATGTCTGCCGTGTGATGAGTCTAAATGCGAGGAGCCAAAGCATTGCTCTGGCGCGGTTGTGCTCGGTATCTGCGGCTGCTGCTCGGTCTGCGCCAAGCAGAAAAACGAAAGCTGCGGTGGCGTCTACGGTCTGTATGGGACTTGCGACCGCGGGCTGCGGTGCGTGATCAGATCACCGCTAAACGGTGGATCCATCACGCAGTATGAGGTCGGAGTCTGTGAAGATGAAAACTGGGACGACGACCAACTGTTGGGATTTGAGCCGTGCAATGAGAACCTGATCACAGGCTGCAACATCATCGACGGGAGGTGTGAGTGTGACAGCATACGGACCTGCAACAACCCATTTGAGTTCCCCAGCCAGGACGCATGCCAGACCGCTCTGAGGAAGATTGAAGagGAGCGGCCTGACTGTTCCAAGGCGCGGTGTGAGGTGCAGTTCTCACCCCGCTGCCCTGAGGACGCGGTGCTAATCGAAGGCTACGCACCCCCTGGAGAGTGCTGTCCCCTGCCCAGCCGCTGTGTCTGCAGCCCTGCAGGGTGCCTGAGGAAGGTGTGCCAGCCTGGGTACCTCAACATCTTGGTAGCCAAGGGCTCTGGAAAGCCTGGAGAATGCTGCGACCTGTACGAGTGCAAACCAGTGTTTAGTGTGGACTGCAGCACAGTGGAGTGTCCTCTTGTCCAGCAGGTTCAGTGTCCACCAGACAGTTATGAGACCCAGGTGCGTCTCACCGCGGACGGCTGCTGCACCCTTCCCACCAGgtGTGAGTGTTTGCCTGGTCTGTGCAGTTTCCCGCAATGCACCGTGGAGAGCTCCCCCCAGGTGGTCTCCCGCGGCGATGGTACCCCCGGGCGATGCTGTGATGTGTACGAGTGTATCAACGAGACGAAGCCGGCTTGCAGCTTCAACGGGTCAGAGTACCATGACGGAGACATGTTCCGAATGGACGCCTGCCACTTCTGCCGCTGTCAAGGAGGGGTGTCGGTGTGCTTCACCGCCCAGTGTGGCATCCTGCACTGTGAACGCTACTACATCCCTGAAGGAGAGTGCTGTCCAGTCTGTGAAGACCCCATCTACCCAGTGCTGAACTTCGCAGGTTGCTACGTGAATGGGGAGATCCTAGCACACGGAGACCACTGGCGTGAGGACGACTGTACGTTCTGCCAGTGTGTGAGTGGTGACTCCCGGTGTGTGGCCGCTGCTTGTGGGCACAGCTGCCTCAACCCAGTGACCGTACCCGGAGAGTGCTGTCCAGTGTGTGAGGAGCCCACCTACATTACTATGGCACCCCCTGCCTGTCAGTCACTAGAGAACTGCTCCCTGTCAGAGAAGCACTGCTTATACGGCTTCCAACTGGACCTGAACGGCTGTCGCACCTGCCACTGCAAAACACGAGAAGAGCTGTGCAGTGCCCTGATCTCTGTCTGTACCCTGAAGTGTCCCTTCGGCCTGCAGACAGATGCCCACGGCTGTGACGTGTGTCAGTGTCGCCCTAGGCCCAAGAAGTGCAAGGCTGTGGTCTGTGACAAGGCCTGCCCCTTTGGATTCATAAAGAACAAGCATGGTTGTGATATCTGTCGCTGTAAGAAGTGTCCAGAGTTACCTTGTGACAAAGCCTGTCCAATGGGCTTCCAGCAGGACAAGTTGGGCTGTCTGAAGTGCCAGTGCAGAGACCAGAGCTCCTCGTCAGTGGCCCCGTTAGTGAAGAAGGGTTCCTGTCTGTCCATGGATGGAAGACGGCACGAGAACGAAGAGAATTGGCATGATGGCTGCCGGGATTGCTACTGCCACAGCGGCAGGGAGATGTGTGCCCTCATCTCATGCCCTGTGCCATCCTGCGACAGCCCTGCCATACGGTCCGGACAGTGCTGTCCATCCTGCCCAgAGGAGCCCAGCTCCCACAAACCAGACCTGGGGGATTCGTCAGTGTGTCTGGCCCCGGGGGGAGAATACTTTGTGGAGGGGGAGACGTGGAACATCGACGCCTGCACCCAGTGCACCTGTCACAGTGGGCGTGTCCTGTGTGAGACAGAGGTGTGCCCGCCCCTGCTCTGTCAGAGCCCAATCAGAACGCAAGACTCATGCTGCCCCCACTGCCCAGacGAGCCCATCACCCCCCATTCTCCCAGTAATGACAGCTTACCCAGCTACTGCAGGAACAAGGAGGGGGACATCTTCCTGGCAGCAGAGTCCTGGAAGCCCAACACCTGCtccagctgtgtgtgtctggacGGTCAGATCAGCTGCTTCTCAGAGTCCTGCCCGCCCGTTGGTTGTGCCAGGCCCGTGCTGCGCAAAGGACAGTGCTGCCCCTACTGCCTCGATGCCACACCGAGAGCCGTGTGCCACTTCAATGGGAAGACGTATGCAGACGAGGAGCGCTGGGACATAGACAGCTGTACACACTGCTACTGCCTTCAGGGACAGACCCTCTGCTCTACTGTCAGCTGCCCCATCCTGCCATGCCACCAACCCACCATAGTGGAGGGCAGCTGCTGCCctatgtgttcagAGATGTATGCACCAGCCCCCACCAACATGCCCATTGAGAAGACAGACCAGCACAGAGGTAGGAAGCAGCACCAGCCTGCCTGGCCCACCCACAGTGAGAACGACATCATGCCCCAGTTCAAAGGGAACTTTGGTAGTCTCCAAATGCCCTACCTGGATGGGAAGACCCCAGTTCCCAGAGAAGACACCACACTGCCCTCTGTGGCATGGGTGGCACTGCCCATCATCATGATGCTGTTCACCATCACAGCTCTTCTCTTCATTAACCAGAAGAAGCAGTGGATCCCCGTTCTCTGCTATCGCACCCCAACTAAGCCCACTTGCCTCAACAACCAGCTGGTATATGTGGATTGCCAGAAAGGCACCAAGGTGCAGGTGGACAGTTCGCAGCGCATGCTCCGGATCGCTGACCCTGACTCCAGGTACAGCGGTTACTACAGCATGCAGAAACAAAACAACCTCAACAACCTGCAGGCTGACAATTTCTACCAGActcagtgagacagagagactggccTGGCCTCGCCTCGTGTCCAACACTCAGCAGTCAGCAAGCAgccaaaatgagagagagagagagagagagcgcattaCCTACAGTACCGTCACAACAACTATTACTTAACACAGACGGATGGAAAAATGATACCAAACCTATCAATGACAAAATAACTAGGATGAATAACGAATCAAACAAAATATAATGATGATGATTTTAAACTACAGCTAACATAATGGAAGAACCAGAATCTAGACTTTTCCTAGATTATTATTCAACTTCTTTTTGCCAGTGAGTGTTACacgtgtgtttggtgtgtgtgatggaggcgTGCTTCTGTATGTGGGtctttgtgaatgtgtgtgtgagtgtgtgtttaaagTTAGATATACATCTTTGCGATGAGGAAAAAGTGGGTATTTTTCAAAGTATGGTATTTTCCTGCATTCCTGCTTCCTTGAAAAAGGCCTTTGAAGAGATAAACAGAATAATTCAAGCTAGTGTTTTCTGTTGAACACTGAACTTTTAGAACCAAAGCTCTGCTGACTGTATGTCGTATCAAAACACACCCTGTAAGAGAGATGCTAGAGGAACACTGTGGCCAGTCTGATCTGAGCCGTGGCAGGACGGACTGACGACTGCCAGACTCTATGTGGCACTGAGccgaaagagagagaatgagagaaagaaagagttcaGATACCGTAGACCCCGTCACAGACAGACCTCAGATGAGCACCTCTCTCAGGTCTGTTCAAGCTGGACTATTGCTCTCTTCTTGCCTTCCTCTTTCCTCACCTTCTTTGAAAACGTTGACATTGGTTTGCTGTCTTGTTTTCCCTCTGTGGAACGTCACCTGTTGGATAGAAGGTGGAAAGGAAGAAGACGCTTCATTCACTCCATTTCTTTTCCTTTGATATTCTGCTCAACATGTATAAGTGTTATTTTCCTGGTCACTTTTAATTCTCCATAATCTTTTGGCTAAATGTATTTAACAACAAAGGGCAGGCTGACGCTGACTTTCACACACTGCAAACAATGGTGTCTTTTATTTGGATAAAGAATAAATGTGTTTGGGTTGATAAAGGCAGGATGaagctacccactgggcacatatgtctattccacgttggttcaatgtaatgtcattgaaatgacgtggcagcaacgttgatttaaccagtgtgtgcccagtgggtcgtGTAGTTCTTGAGGATTTAGGATTTGAGCATATGCTTTACAAGCTTTTCTGCTTTGTTTCTGTACGTCCTGTTTTACATGGAGTTGCACACACATAGGGAGACTATTTAGCTCCTTTAGGAAACACTGAGGATACAAGAAAACATAGAATCAACGAATATGTTCAAATGTGTTTTCTCTCGGGGTTCTCTGAGGACGAGCTATATTAAAGTAGCTCTGATGTTTTTCTCCTTTTGTCTTACTGGCTGTAAGACTAACAGTCTCCTCTTCTCGATATTACCCAAGCACCTTTGTCTTCATTTATTCATTGCAAAACATTATACAGTTGGAACACGTATGTACATATTACTGCTGAAGATGAAAAATACATGAAATATTGtgtgactatatacagtatgtatgtgtctatgtgtatgtTGTTTATTCATATATGTACGTGTCAacccacacatgcatgcacacatgatTTTTTCTTCACATGTACATTTCTCAATTCATTTCCTATTGAAGGTATTTATGATTGAGAAATAGATTTGATCTAATAATAGAAAACATGATGAGAACAAACATTTGCATTGATTTTTTGAAAAGAGGAGTGATAGAGACAGGACAGAAAAAACACAATCGTATTCAATCTGTTTTTCCCTCATTTATTTGATGTCatttttttaagaaaaaaaataattgtcTATGAGGGCTTTGTTTGATTGGTCTGTGAGTTCCCTATctatttgagtcaatcagtttcCCTGAAAGAAGCAATGTCCAAAATGCCAACCAAATATAGACAAGTGAGTTCTGAGCTGAGCAGTACCAGGCTCTCTCAATCTGTTATTCTTCTCTTTCATTTGTCCTTTCTGAAGTCAAACTATTGAAAAGTGGGTGGACATAAGCtctgggagagagggtgggatggaGGAAGGTAGGGGTAGTAGTTGACTTTTATAGTTTGTCTTCAGTGTATCTTAGTCTGTCTGACAGAAATTTAACTAGAATCATACATCTTGGCACTTTTATATTGAAAATAACCTTTTTtggttaattaaaaaaaaaaaaactttcattGAAAGAGATGCCCTTGGTTTTTTCCTGAGCCCTGTCAGACCCAGTGTTACAGTTAGGTTCCAGTTGTTTCTGAATATTTGATCTACAAAACCTAAATTAACTTAGAACTCTCACGGTCATTGTATGCAGGCACTGCATTTCTGTTATAGGTGGGGATTTCTGGCAAGAACAAGAGGGGTAAATATTTACCTTTCAAAACATGAATTGCAGCTGAAGCTTGCTCTGTTTTCTCCTAACCTATATGTATTCTCCAGACATAGGAAAAACATACTCAAATCTACTATATAAacgacatgtactgtatgtaaatgctTTTTCAATGAAAGTTGATTGGTTTGATTCTCCAGCCATTATTTACAGGTCTGTCTATCATCTGGACACAAACCACAGGGAAACCTCACTTAAATACACAATCCACATCATTTCCAATCGGTGAAGTGATGGATCATAATAATTGATTTGATTAAGGACCATAAGTTCTATTATACTCGCATCACATTGACTGGCTGGGTTCATATGTGACTTGGCTCTATGTTGCAGGATGTGGTGCTACTTCCCCTACAGTATGGTTGAGTAACTTCATACAGGAATGCATCTTATTCACAATGGGTCTTACAGGGTGAAATCGTTGTATCTTTCAGTGCATCCTCCAAGTATTGTTGTAAATACTTGAGTATCACTTgccaaaataaacaaataaaaacattgttggaaaagaaagagagagggaaacaaaTTAGATTTAATTTATTGTGTTAAATTACCTAAATAATTTATTAATGAGCAAGATAATTGAACATGAACATAATAGGCCTTAAGCGATGATGCAGCTGAAATTGTGAAACTATTTTAGTGTTGTGTCAGTCTTTCGAAGAGCATGTAAATAAGGTTGTACTTTAGGTAGGTGGAGAAGTTGGAGGATCACAAGCTTTCACATATTTTCTGTGTTTTTTATCACATGGACCTGATTTAGCCgaatcccagatctgtttgtgctgtcttgccaactcctatggtcattgtcacgcAGTTTACTGTAACACAATGTGACAAAGAACATAGGAGTTGGATAGCTAGACAACACAAATTCATCTGATCAGGCTACATCTGCCTTGTCCAAGGAGCACAAAAGCCTGACACCCTGATGAGCATTTTCCTCTGTTCCAATAAAGATAGCCTATTGAGAGGGAAATATCTCTCTGTCCCCATTCTTTCCTGTTAACCATTTTATTTACACAACTGCCAATCCCCTTTAGAGTCTGAATATTACTGGTGTTTCATgcttttgtaaaaataaaaaatatgttgatATTGATAATGATGATATTGCAAAAACAAGATTTATTAAGAGGATAGATGAATATTTGACTGAATTTCCCGTAGCACAGCAGATTATCTTTTGCAAGttcttgtattattattttttgtttctTTGCAGCACAATAAATCATTTGAAAACA

Function

NR:

description
cysteine-rich motor neuron 1 protein

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0001558 regulation of cell growth biological_process
GO:0001568 blood vessel development biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K24518 CRIM1; cysteine-rich motor neuron 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585125.2 True 6865 mRNA 0.47 17 27198791 27371614

Neighbor

gene id symbol gene type direction distance location
LOC110505724 LOC106611166 coding downstream 31758 27118113 ~ 27167033 (-)
dglucy cssa09h14orf159 coding downstream 81584 27106002 ~ 27117207 (-)
LOC110505719 LOC106611163 coding downstream 221949 26953574 ~ 26976842 (-)
LOC110504334 LOC106611214 coding downstream 263056 26933403 ~ 26935735 (-)
LOC110505717 LOC106611162 coding downstream 272827 26910778 ~ 26925964 (-)
nrde2 nrde2 coding upstream 304956 27676570 ~ 27692575 (-)
LOC110505731 LOC106601235 coding upstream 360535 27732149 ~ 27854460 (-)
brms1la LOC106611172 coding upstream 483005 27854619 ~ 27858599 (-)
LOC110505734 LOC106611217 coding upstream 613936 27985550 ~ 27988951 (-)
LOC110505736 LOC106611176 coding upstream 640247 28011861 ~ 28014313 (-)
G1968743 NA non-coding downstream 23449 27175115 ~ 27175342 (-)
G1968706 ccdc88c non-coding downstream 120252 27076945 ~ 27078539 (-)
G1968573 NA non-coding downstream 307357 26891112 ~ 26891434 (-)
G1968253 NA non-coding downstream 320282 26878254 ~ 26878509 (-)
G1968247 NA non-coding downstream 325342 26872963 ~ 26873449 (-)
G1968905 NA non-coding upstream 60424 27432038 ~ 27432341 (-)
G1968920 NA non-coding upstream 73422 27445036 ~ 27445261 (-)
G1968922 NA non-coding upstream 73823 27445437 ~ 27445663 (-)
G1968959 NA non-coding upstream 99615 27471229 ~ 27471438 (-)
G1968968 NA non-coding upstream 103732 27475346 ~ 27475787 (-)
LOC110505716 LOC106024658 other downstream 433420 26716542 ~ 26765410 (-)
G1967882 NA other downstream 660083 26535364 ~ 26538708 (-)
G1964728 NA other downstream 3770147 23425563 ~ 23428841 (-)
G1964592 LOC106569888 other downstream 3976288 23221973 ~ 23222503 (-)
G1964564 NA other downstream 4030678 23165032 ~ 23168113 (-)
G1969699 LOC100380709 other upstream 728307 28099921 ~ 28101436 (-)
G1969724 NA other upstream 771824 28143438 ~ 28143762 (-)
G1970606 NA other upstream 1486326 28857940 ~ 28861987 (-)
G1971357 LOC106611199 other upstream 2151146 29522760 ~ 29525046 (-)
G1972454 NA other upstream 2610670 29982284 ~ 29982900 (-)

Expression


Co-expression Network