calm1a (LOC102293206)


Basic Information

Item Value
gene id calm1a
gene name LOC102293206
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27694848 ~ 27708762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585131.2
TTTTCAGCGGCGGAGGAATACACCAAGCTATATAGACAGAGCTCGCGAGAGATACACACCTTCAACCCATCAGTAGAGGTCCCGGGAACTGGTCAATCTCGTAGTCTAGTTTTAGAAAACTAACACATTCAGCGCCGACAGACATGgcTGACCAACTAACAGAGGAGCAGATTGCCGAGTTCAAGGAGGCATTCTCCTTGTTCGATAAGGACGGCGATGGCACCATCACAACCAAAGAGCTGGGCACTGTGATGAGGTCGCTGGGACAGAACCCCACAGAAGCTGAGCTGCAGGACATGATCAACGAGGTCGATGCTGATGgCAATGGAACCATTGACTTCCCAGAGTTCCTTACAATGATGGCCAGGAAAATGAAGGACACAGACAGCGAGGAGGAGATTCGCGAGGCGTTCCGGGTATTCGACAAGGATGGGAATGGTTACATTAGTGCAGCAGAGCTCCGTCATGTCATGACAAACCTGGGAGAGAAGTTAACAGACGAGGAGGTCGATGAGATGATCAGAGAAGCCGACATCGACGGAGACGGACAGGTCAACTATGAAGAATTTGTACAAATGATGACAGCAAAATGAAGCTCTCCTACCCTTCTCCTGGCCTCCTTagaagacaaaaaaaaatcaGTCACATGTTTTACTTACCTCTTGCAAAAATCATACTGTTTCTGTATAGAAAACATAACTGAATGTTGAAAAAATACAAATCTGTCCACATAAATTAAGCAAAAATAAATGATCTGCATGTACTGGTTAGTGGTCCTGTCCCCAAAGATGAgtttagacatcagtaataagaTAAAATAATAACTGTAAACAAAATGTCAACAACTAAAGAAAGCACTTGGTGAACTGCCTATTGGTTCCAGTTGCTAGTGGTAATGTTTGGGCTGACCATTTTCTATATTTTTCTGTTTCTGTTCTTCATGCATGCAGCTTGAGACTGGTGCCGCAGTCTGGCCAATGGGCTCACTCTGATTCCACAGCAGTGCCATGGGTACCGTTGGTGGGTTTTGGGGCAGTCTATATTGAGAGACGAGCTCacgagatggggatggggagtcCTACTAAACCACCGGAGGTTggtgcaccttaattggggaggatgggcttgtgATAATGGCTGGACCGGGAtgtgtggaatggtatcaaatggctcaaacgcatggtttccatgtctttgatgccattccattcactccattccagccattattataggctgtcctcccctcagcagcctccactgtactAAACTCACATAGAGATGGAATTAATGGGACCTTTTGCAGTTTGCTTAATTCATTACAAAAATTAATATTTTTAAGATGATGaacatttacaaaataaatacatttagaaCTATGTTTGGCATGTTGGGAATATTTGGAGTTCTGTTTCCTTGTTGTGCGTGCAACTTTGGGTACGATTCAAGGGTGGGAGGTGGGCTGGAGATCTTTTTACCTGCTAGGGGAAGTCTTTGTTTTTTTTGGCAAGGGAATGCGGATGTACCGTCAATGTTTCTACCTTCTGTGTCTCGACTCTGACCAGGGTTGCGTGTGGGTTTTGAGTGACCTACAGCACATCATAGGGTCTTCAACACCAGAGTCTTCTCTAGACTGTCCATATTGAGTTCAGTTTACCTTCATTCCAAGTTGTACATGCTAGTCTttgattataatttttttttcaataaaatACCATGAACTTAACCTTAA

Function

NR:

description
PREDICTED: calmodulin-like

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585131.2 True 1732 mRNA 0.44 6 27694848 27708762

Neighbor

gene id symbol gene type direction distance location
LOC110505726 psmc1 coding upstream 24434 27664997 ~ 27670414 (+)
LOC110505722 LOC106611215 coding upstream 593298 27099673 ~ 27101550 (+)
LOC110505721 ccdc88c coding upstream 595138 26988390 ~ 27099710 (+)
LOC110505720 LOC106611151 coding upstream 741241 26952140 ~ 26953607 (+)
LOC118944312 NA coding upstream 790811 26901777 ~ 26904037 (+)
LOC118944371 NA coding downstream 6338 27715016 ~ 27721101 (+)
LOC110505733 LOC106611173 coding downstream 151254 27860016 ~ 27985110 (+)
nfkbiab LOC106611175 coding downstream 297688 28006450 ~ 28009481 (+)
ppp2r3c LOC106611177 coding downstream 332839 28041601 ~ 28051126 (+)
LOC110505741 LOC106611180 coding downstream 349430 28058192 ~ 28065667 (+)
G1969177 NA non-coding upstream 3657 27690629 ~ 27691191 (+)
G1969131 NA non-coding upstream 75747 27618853 ~ 27619101 (+)
G1969130 NA non-coding upstream 76971 27617645 ~ 27617877 (+)
G1969044 NA non-coding upstream 139815 27547992 ~ 27555033 (+)
G1969009 NA non-coding upstream 185349 27509270 ~ 27509499 (+)
G1969198 NA non-coding downstream 19085 27727847 ~ 27814915 (+)
G1969206 NA non-coding downstream 34186 27742948 ~ 27743489 (+)
G1969223 NA non-coding downstream 64617 27773379 ~ 27773755 (+)
G1969276 NA non-coding downstream 147520 27856282 ~ 27856719 (+)
G1967965 NA other upstream 1039512 26654905 ~ 26655336 (+)
G1967032 NA other upstream 1861527 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 2903254 24788926 ~ 24791594 (+)
G1965396 NA other upstream 3127701 24565731 ~ 24567147 (+)
G1970001 NA other downstream 704838 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1765358 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2614751 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2921566 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2928292 30637054 ~ 30655039 (+)

Expression


Co-expression Network