LOC110505731 (LOC106601235)


Basic Information

Item Value
gene id LOC110505731
gene name LOC106601235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27732149 ~ 27854460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962931.1
aacatatcttaaGCTGTTTTACTTGGGATAAAGATATGCCCCTAAATCAcagaacagtttggagattacaGTCTTGTTTCATGTATAAAAGTTGCTGCAATACCATAATTTGTCACAACCAATTTCTCCTACCTAAACAGCCAAGTGTTTAATGAAAGCTTTTTTTTAACTTGCCCAAACACTAGTGCCAAGACTAAGATCAATATTTGAAATGTGTATTGAAGTGTAGTAATGTGAATGTTGGTGTGAAAATAATATGAACTAAACAGATCAAAAGCAGAACAAATGACTTGTATGTTGTATGCAAGGTTGCAGCAAGGAGTAGTCTTGTACTAAAGCCTTTTGGGAGAGTATCAATATGAATGTGGTGTTAAGTATTTAGATTTCATCACGACTGCCTGTATGTTCATAAACATGAGAAAAGTTGACTAAACAAAAAGTAAACATAGTGAAACAATACATAGCTGTGTGATTATGTCCTTGCATGCAGTTTGGGAAATGGCAATAAAACATTAATTAATAGTTTCACATCTGACAGATGTGAGAGTGACAGCTACCAGTGGGTATCGCTGTTTCCCTTCCGATGAACTTTTCCAACCCGTGTCGCAGCTGACGCTTCGTGGCTGTTGTGTTTTGGTCTCTGCTAGAGTCTGAACTGAAAATGACAGCGAGAAAGTCTGGGTCACGACTCGAGACAGAGATAGAACGAAGCCGTTCGGAAGGGCAATGGGACAAGATACCAGAGCTTGTACGGCAGCTCTCTGCCAAACTAATATCAAATGATGACCTGGGGAATCTGCTGCTGGGGGAAGCCAAGCTCCAGCAGTACCTCAAGGAGAACCCCATCAAGCAGGGGGCCAGCCCGAGGGGCCCAAGACCCCAGCTTGTAGAGGTCCACAAGCACCTGACCGCTGCCCTGGACCGAGGGAACCTCAAGTCGGACTACATGCAAGAGGCTAGTATGTTGATGGCCAAGCTGTCCTATGTGGAGGGAGACTATAGTGAGGCCTTCAACCAGTATGGCAAAGTGACCCTGGACGAGCTGGCACTGGTGGGAGCCCCCGTCTACCGTCTCTCTATGATTGCCGAAGCATACGCTACCAAAGGTCTGTGTCTTGAGAAAGTCCCGGCTGCATCTCCGTCCCTGTCCAATTATAACGTGGACAAAGACCAGGAAGTGATTACCTGCTATGAGAAGTCTGGAGACATTGCCCTGCTCTACCTACAGGAAGTAGAGAAGGCCCTCAGTGCGGGGTTGCAGAACCGCAGTCCAAAGCCAGGTCCAGTGGCCCAGGAGCAGGAGCTGGGATACTTCCTGGAGACGGGACTTCAGAGGGCACATGTCATCCACTTCAAAAATGGTAACCTGACCCAGGGAGTGGGCCGCTTCCGGGAGATCCTCCGAGCTGTGACCAGGACCACACAGAACCTACGAATGacCATTGCCAAACAGCTGGCAGAGATCCTGCTGAGGGGGATGTGTGAGCAGAGCTACTGGTCTTCTCTGGAGGACCCTCCTAGCAAGTCCCACCTGGACGACCCCCTGCTACGCCAGGGAGCCCCCTACCTCAAGGACTACGCCCTCAGCTGCAGGCCACGCATCTACTCCGGAGAGAATCTGTTTTGTCCACAGGAGAACACAGAGGAGGCTCTGCTCCTGTTGCTGATTAGTGAATCTATGGCCAACAGAGATGCGGTGCTGAGCAGGATCCCAGAGCATAACAGCGACCGCATCATCAGCCTGCAGAGTGCCTCTGTGGTCTACGACTTGCTGACCATCGCCCTGGGGTGACGGGGACAGTATGAGATGCTCTCTGAGTGTCTAGAGAGGGCCATGAAGTTTGCCTTTGAGGAGTTCCATCTCTGGTACCAGCTAGCCCTGTCACTGATGGCTGCTGGGACGtcggCCAGGGCGGTGAAGGTATTGAAGGAGTGTATCCGTCTGAAGCCGGATGACCCCACCATCCCCTTACTAGCTGTCAAGCTGTGCATTGGAGCACTCCATTGGCTGGAGGAAGGAGAGTGTTTTGCTAAGATGGTGGTGGACATGGGGGAGAAGGCCTCAGagttccgagctaaaggttaccTAGCCATCGGCTTGGTGTGCAGCCTCAAGGCCACAGACGCTTCCCTACGGGGGATGCAGGAGGAGTATCAGAAGAAGGCCCTGGGTGCGTTCCAGAGGGCCCAGAGCTTGTCCCCCACAGACCACCTGGCTGCCTTCTACCTGGCCCTGGAGCTGGCTGTGTCACGACAGATCCCGGAGGCGCTTGGGTACGTGCGTCAGGCTCTGCAGCTGCAGGGAGACGACGtgtactctctccacctgctggCGCTGCTGCTGTCGGCTCAGAAACACTACCACGACACTCTCAACATCATCGAGATGGCCCTCAGCGACTATCCTGAGAACTTCATTCTGTTATTCACCAAGGTGAAGCTGGAGACATTGTGTCAAGGACCTGAGGAGGCTCTGCTCACCTGCAAACACATGCTACAGATCTGGAAGTCCTGTTACAACCTCACCAACCCCAGTGATTCGGGTCGACGCAGCAGCCTGTTGGACAGAGCCATAGCAGACAGATGGACACTAAATGCCATGACGCTGCCTGACTTCAGTGACCCAGAGACGGGCTCAGTCCACACCACATCCATGGCGGCGTCGCGGGTGGAACAGGCCCTGTCAGAGGTGGCCTCCTCCATGCAGAGCAGCGCCCCCAAACAAGGACCCCTACACCCCTGGATGACTCTGGCTCAGATCTGGCTTCACGCAGcGGAGGTATACATTGGCATGGGAAAGCCTGCGGAGGCTACGGCCTGTACACAGGAGGCTGCCAACCTGTTCCCCATGTCCCACAACGTGCTGTTCACGCGGGGCCAGGTGGCTGAGCTGTGGGGTAATGTGGACGAGGCCAaacgctggtatgaggaggcccTCTCCATCAGTCCCACCCACGTCAAGACCATGCAGAGACTGGGTTTGATCCTGCACCAGCTGCAGCGTTACAGCCTGGCAGAGAAGATCCTTCGGGACGCGGTGCAGGTGAACTCCACAGCCCACGATGTGTGGAGCAGCCTGGGGGAGGTGCTGCAGGCTCAGGGCCATGGTGGCGCGACTACAGAGTGTTTCCTCACCTCCCTGGAGCTAGAGGCCTCCAGCCCCATTTTGCCCTTCACCATCATACCACGACAACTCTGACCTGGGAGGGAGAAggacacatacgcacacacacatacacgtgtacgcatgcacacacctacacatatacgtataaacacacacacactgtatatacactagcCAGACACTGACCTACCTTGGATATATGCCCCACAAAACAAACACACGATACATTCCAGTGTCCCTTCTAGCATTCCACTTAGAATTCATGCCCAATACATTGCGTCTTTCTGAGTAGTATGCTGGTGTGgatttaaaaacacacacatactgtacatatatcCATCAGCCAcacacaaatataaatatatatacactcctCACCCACCCACACCGACTGACCAAGCCGCTCTACCCCCCCAGGGCGAGGGTGCCAACAACCTTCCTCTTACCTACCACCTCCTGCTTCAGGCCTCTCTGCTGTCAGAACCAGCACCACCACAACCCTATGATGCCTTGCACTCAGCTCTTTCACCCCATATGATCAGACAACCACCCCTCTTCTCTTGAACCCAGTCATATGCCGAGCTAGAtgagctggagagagggagggactgcCCAATGGACACACCCAACTGACAGAACAGAGCTCTCTATCTGGTCCAATAATGTACAATAACTGTTGATGCCATGCCAACACCACTGTGCTGTCCCCTCCCCCTAGTCTCTGCTGTGACCACCGTATCGTATCCCACAATCCCTTGCTATTCTTGACTGTGACTCCTGCACTCCTGCCTTTATCATATCTACATGGTGGAAATCAGATCTACGCTCAAGGCTGCAGTACTATTTTTCCCATGATCCTAACAATGAAGTCAGCTGTAGTAACCCAAGCATTTCTAGCCTCTGCCAGGCAGTTACTGGCGACTTTGTCCACCGTGTGTTGTGTTGCGAGAACAGAAGTGAATGGAtgtcagggtagagagagagagttggccGTGCAGGTGGGTCActcactggtctctctcttttctctggctGTTGattggtgggagaggagagggacagagcagaggtgtttttcagacagacagagttgCAGAGGTTTGCATTGCAGATGACATAGACAATGTTGTGCTGAGCAGTGGACAATGGCTGGCCACCGTGGTGCTTGCCATCACCAGACCCCCCACCCTGTCCTAGCTTTCAACTCCAATGTGTCTGTGCACAtttgtgtatacagttgaagtcagacgtttacatacaccttagcaaatacatttaaactcagtttttcacaattcctgacatttaatcctagttaaaattccctgtattatttag

Function

NR:

description
LOW QUALITY PROTEIN: tetratricopeptide repeat protein 7B-like

GO: NA

KEGG:

id description
K21843 TTC7; tetratricopeptide repeat protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962931.1 True 4465 mRNA 0.52 21 27732149 27854460

Neighbor

gene id symbol gene type direction distance location
nrde2 nrde2 coding downstream 39574 27676570 ~ 27692575 (-)
LOC110505725 LOC106611167 coding downstream 360535 27198791 ~ 27371614 (-)
LOC110505724 LOC106611166 coding downstream 565116 27118113 ~ 27167033 (-)
dglucy cssa09h14orf159 coding downstream 614942 27106002 ~ 27117207 (-)
LOC110505719 LOC106611163 coding downstream 755307 26953574 ~ 26976842 (-)
brms1la LOC106611172 coding upstream 159 27854619 ~ 27858599 (-)
LOC110505734 LOC106611217 coding upstream 131090 27985550 ~ 27988951 (-)
LOC110505736 LOC106611176 coding upstream 157401 28011861 ~ 28014313 (-)
LOC110504219 LOC106611176 coding upstream 159957 28014417 ~ 28040025 (-)
fam177a1 LOC106611178 coding upstream 196528 28050988 ~ 28053517 (-)
G1969461 NA non-coding downstream 19132 27702808 ~ 27713017 (-)
G1969458 LOC108228616 non-coding downstream 23387 27641410 ~ 27708762 (-)
G1969491 psmc1b non-coding downstream 62125 27669036 ~ 27670024 (-)
G1969120 NA non-coding downstream 121382 27608095 ~ 27610767 (-)
G1969073 NA non-coding downstream 176993 27548065 ~ 27555156 (-)
G1969587 NA non-coding upstream 29534 27883994 ~ 27885177 (-)
G1969617 LOC106611173 non-coding upstream 66845 27921305 ~ 27922259 (-)
G1969662 NA non-coding upstream 157082 28011542 ~ 28011741 (-)
G1969678 NA non-coding upstream 165515 28019975 ~ 28020195 (-)
G1969683 NA non-coding upstream 173863 28028323 ~ 28028646 (-)
LOC110505716 LOC106024658 other downstream 966778 26716542 ~ 26765410 (-)
G1967882 NA other downstream 1193441 26535364 ~ 26538708 (-)
G1964728 NA other downstream 4303505 23425563 ~ 23428841 (-)
G1964592 LOC106569888 other downstream 4509646 23221973 ~ 23222503 (-)
G1964564 NA other downstream 4564036 23165032 ~ 23168113 (-)
G1969699 LOC100380709 other upstream 245461 28099921 ~ 28101436 (-)
G1969724 NA other upstream 288978 28143438 ~ 28143762 (-)
G1970606 NA other upstream 1003480 28857940 ~ 28861987 (-)
G1971357 LOC106611199 other upstream 1668300 29522760 ~ 29525046 (-)
G1972454 NA other upstream 2127824 29982284 ~ 29982900 (-)

Expression


Co-expression Network