LOC110504219 (LOC106611176)


Basic Information

Item Value
gene id LOC110504219
gene name LOC106611176
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28014417 ~ 28040025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504219
ATGGACACCGGGACACTGTCTTACGAGCTGCTTCTTCAATACCTCACCCTGTGTGTCAGCAGTGGCCACCACTTGGAGGTGTTTAACAAGTATGACATCATGAGGAGCCAGATCATTACGTTAGACACCAGGGCCTCCAGCCTGCTCATAAAGGACTTCAGCCGATCAGAACGCTGGAAGGAGGCGCTATCACACCCATCAAGAGGGCCATCACCGCGTAAGTATGGCGATGCCATCATGGGGGCAGTACTGCATGGGCCACGGGGACGGGCTGCAGTCCATCCTGCTTCATATAGAGACAACCAGACAACCTATCAGACAACCTATCCCATGGAGACTCTGGATAAAGATATCAAAGCTTGGTTTGAGAGGGGATTGTGTCTGAGCTGTCAGGCAGAGCTGGAATTCATCACACAGAGTCAGGAGGAGTACGCCCAGCTCAAGGATAGGGTTATGGGGGATGTGATCCAAGGCAGAGATGTCTTAAATGAGACCACTCCAGAGGAGCTGGAGAGCTTCAAGACCTTTGTCAAGTGGAAGCCGGCCTTTGACATGGTCATAGATGGTTTCAAAGTTGCCAACATGGACATCAAAGGGAACCAGTCGCAGATGTTGAGTGCTCTGCCAGATCTCTCATATCTGGCGCTCCTGGTGGTGGTGTCAGAGCTGGAGCGACAGGGCCTGGTCATTCTGGTCCTGTGGAGGAAGCACATGCAACGGCCCTCACGCAGCTGGGACAGACATGACATGAGCCTGGCCCAACAGAAGGCCCACTGCTTCTTCACTGACATTTCTGAGGATGACCCTTTCCTGCTGTATGCCACACTGCACTCTGGGAACCACTGTAACTTTGAGCTGGGACCTGATGCGGGACCACAAGGCCTGCCTGCCCGATGGTGCTACTCGACGCCTCTTCTTCAAGTGGCAGAGAGGGGATACAGCCAGgAGGATGTCAAGTTATGACACCATTGTCCAGACAAATGGAGGCTCCTGTCACATCCACTATGATGAGAATGGGGCAGAGAGATATACTTATTTAGTTCCCCAGAAGTGTCTTTGTCTCACCAGGGCAAAATAAGGCACCTGCTTCTGTTTGATCTTCACAAACTGTAAAATACAGTGTTCCTTAATGAAACGATAA

Function

NR:

description
LOW QUALITY PROTEIN: mitochondrial ribonuclease P protein 3-like

GO: NA

KEGG:

id description
K17655 MRPP3; mitochondrial ribonuclease P protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504219 True 1141 mRNA 0.52 8 28014417 28040025

Neighbor

gene id symbol gene type direction distance location
LOC110505736 LOC106611176 coding downstream 104 28011861 ~ 28014313 (-)
LOC110505734 LOC106611217 coding downstream 25466 27985550 ~ 27988951 (-)
brms1la LOC106611172 coding downstream 155818 27854619 ~ 27858599 (-)
LOC110505731 LOC106601235 coding downstream 159957 27732149 ~ 27854460 (-)
nrde2 nrde2 coding downstream 321842 27676570 ~ 27692575 (-)
fam177a1 LOC106611178 coding upstream 10963 28050988 ~ 28053517 (-)
ctage5 LOC106611179 coding upstream 26075 28066100 ~ 28094235 (-)
LOC110505745 LOC106611187 coding upstream 1073590 29113615 ~ 29122177 (-)
daam1a daam1 coding upstream 1095336 29135361 ~ 29206222 (-)
LOC110504220 LOC106601062 coding upstream 1177356 29217381 ~ 29221732 (-)
G1969662 NA non-coding downstream 2676 28011542 ~ 28011741 (-)
G1969617 LOC106611173 non-coding downstream 92158 27921305 ~ 27922259 (-)
G1969587 NA non-coding downstream 129240 27883994 ~ 27885177 (-)
G1969501 NA non-coding downstream 162061 27824770 ~ 27852356 (-)
G1969536 NA non-coding downstream 269274 27742056 ~ 27745143 (-)
G1969692 NA non-coding upstream 14064 28054089 ~ 28054386 (-)
G1969694 NA non-coding upstream 17480 28057505 ~ 28057723 (-)
G1969695 NA non-coding upstream 18213 28058238 ~ 28058742 (-)
G1969668 LOC106611180 non-coding upstream 19843 28059868 ~ 28060516 (-)
G1969670 NA non-coding upstream 21600 28061625 ~ 28064306 (-)
LOC110505716 LOC106024658 other downstream 1249046 26716542 ~ 26765410 (-)
G1967882 NA other downstream 1475709 26535364 ~ 26538708 (-)
G1964728 NA other downstream 4585773 23425563 ~ 23428841 (-)
G1964592 LOC106569888 other downstream 4791914 23221973 ~ 23222503 (-)
G1964564 NA other downstream 4846304 23165032 ~ 23168113 (-)
G1969699 LOC100380709 other upstream 59896 28099921 ~ 28101436 (-)
G1969724 NA other upstream 103413 28143438 ~ 28143762 (-)
G1970606 NA other upstream 817915 28857940 ~ 28861987 (-)
G1971357 LOC106611199 other upstream 1482735 29522760 ~ 29525046 (-)
G1972454 NA other upstream 1942259 29982284 ~ 29982900 (-)

Expression


Co-expression Network