ppp2r3c (LOC106611177)


Basic Information

Item Value
gene id ppp2r3c
gene name LOC106611177
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28041601 ~ 28051126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585141.2
GAATAAGAAGAAGTCGCTAGCCGACCAATCCCAAGCGAGCTAACGATTGTTTAGACATTTCAGAGAAGCTGAAAAAATAAGTTATCATAACATTGATTAGCTTGTTTTCATGTTATTAGGAATAAACATAAGTTAAAATGTCAAACGATACGGTAGTACACTGGAAGGAACTTTTGAAAAGAAGATTGGCATCCTCCAAGAAAGATGAGAGgactgaggaggagaagaaagcagAGGAGACAGCACTCTTCACTAAATACTACacagagtggaggggtggaggcaaCAGAGAGAACTACAGGAACATTCCACGCTTCTACTACAGGCTTCCTGCAGAGGATGAAGTTCTCCTGCAGAAGCTGCGAGAGGAGTCCAGAGCCGTCTTTCTGCAGAGGAAGAGCCGGGAGCTTCTGGACAATGAGGAGTTACAGAATCTGTGGTTTCTGCTGGACAAACATCAAGTGCCACCCATGACAGGAGAGGAGGCAATGATAAGCTATGACAGTTTTCTGAAGGTTGGAGAAAAAGCCGGAGTTAAGTGCAAGCAGTTCTTCACTGCCAGGGTGTATGCCAAACTTCTCCACAACGATCCATATGGCAGGATATCAATTATGCAGTTCTTTAACTATGTCATGAGAAAAGTGTGGCTTCACCAGACGAGGATAGGACTGAGTCTCTATGACGTGGCTGGACAGGGCTACCTCCGTGAGTCTGACTTGGAGAACTACATTTTAGAGCTGATTCCCACACTCCCTCAGCTGGATGGCCTGGAGAAGTCCTTCTATTCCTTTTATGTCTGCACCGCTGTCCGCAAGTTTTTCTTCTTCCTGGATCCCCTACGGACTGGGAAAATTAAGATTCAAGACATCTTGGCCTGCAGCTTTTTGGATGATCTACTCGAGCTGAGAGATGAGGAGCTTTCCAAGGAGAGCCAGGAATCCAACTGGTTCTCTGCACCCTCTGCTCTTAGAGTTTATGGTCAGTACCTGAATCTTGACAAGGACCACAACGGCATGCTCAGTAAGGAGGAGCTGTCTCGCTACGGCACTGGCACTCTGACCAGCATATTTCTGGACCGCGTGTACCAGGAGTGCCTCACCTACGACGGAGAGATGGACTATAAGACGTACCTGGACTTTGTCCTGGCTCTGGAGAACAGGAAGGAGCCTGCAGCGCTGCAGTACATCTTCAAGCTGCTGGACATGGAGAATAAGGGCTACCTCAATGTCTTCGCACTCAACTACTTCTTCAGGGCCATTCAGGAGCAGATGAAAATCCATGGCCAGGAGTCGGTGTCCTTCCAGGATGTCAAGGATGAGATCTTTGACATGGTGAAGCCAAAGGATCCCTACAAGATCACGCTGCAGGATCTAGTGAACAGCAGCCAAGGAGACACAGTAACCAGCATTCTCATTGATCTCAACGGATTCTGGACTTATGAAAACAGGGAAGTTCTGGTTGCTAATGACAACGACAGCAACACAGCTGACCTTGACGATACATGAATCTTCAGTCAAACTGGGGACTACTAGACTCAGCAAGAAGAAGATAAATGTTACGGTAAAGATTCTAGACACACTCACTGGAACTcagttgtttaaaaaataacttgtCAAGACTTCGAAATACAACAGTTGTATGACCTGTTTAAATGTTTATTAATTTAGTGTACATAGTATAGAAAATGAAAATACTATGTATTTTACTCTAAAAATGACTATAAAAAGCCTTCAAATGAAACTGTTTTTCCATTAACACATTATAAAATGATTTTACATAA

Function

NR:

description
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585141.2 True 1780 mRNA 0.45 12 28041601 28051126

Neighbor

gene id symbol gene type direction distance location
nfkbiab LOC106611175 coding upstream 32120 28006450 ~ 28009481 (+)
LOC110505733 LOC106611173 coding upstream 56491 27860016 ~ 27985110 (+)
LOC118944371 NA coding upstream 320500 27715016 ~ 27721101 (+)
calm1a LOC102293206 coding upstream 332839 27694848 ~ 27708762 (+)
LOC110505726 psmc1 coding upstream 371187 27664997 ~ 27670414 (+)
LOC110505741 LOC106611180 coding downstream 7066 28058192 ~ 28065667 (+)
gemin2 LOC106611181 coding downstream 43379 28094505 ~ 28099259 (+)
pnn LOC100380709 coding downstream 48528 28099654 ~ 28106376 (+)
LOC110505743 LOC106611182 coding downstream 497422 28548548 ~ 28601863 (+)
LOC110504335 LOC106611218 coding downstream 1049936 29101062 ~ 29106042 (+)
G1969369 NA non-coding upstream 4356 28037028 ~ 28037245 (+)
G1969356 LOC106611176 non-coding upstream 27327 28011861 ~ 28014274 (+)
G1969276 NA non-coding upstream 184882 27856282 ~ 27856719 (+)
G1969198 NA non-coding upstream 226686 27727847 ~ 27814915 (+)
G1969223 NA non-coding upstream 267846 27773379 ~ 27773755 (+)
G1969263 NA non-coding downstream 14600 28065726 ~ 28066649 (+)
G1969384 NA non-coding downstream 65445 28116571 ~ 28116774 (+)
G1969387 NA non-coding downstream 79356 28130482 ~ 28130702 (+)
G1969397 NA non-coding downstream 92072 28143198 ~ 28143576 (+)
LOC110505721 ccdc88c other upstream 953285 26988390 ~ 27099710 (+)
G1967965 NA other upstream 1386265 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2208280 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3250007 24788926 ~ 24791594 (+)
G1965396 NA other upstream 3474454 24565731 ~ 24567147 (+)
G1970001 NA other downstream 362474 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1422994 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2272387 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2579202 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2585928 30637054 ~ 30655039 (+)

Expression


Co-expression Network