LOC110505743 (LOC106611182)


Basic Information

Item Value
gene id LOC110505743
gene name LOC106611182
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28548548 ~ 28601863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585156.2
CATCAGAGCGGTTCTATTGCCCATGTGGCGTCGTTCTTTAGGCCTACCTCTTTTGTTCAATGCAATACTATCCCGTCTTCCCTGCAAAAGCTCTACCACCAGCACTTCTTTAGCAGGTCCCATAGAGTGAAAGGCTGAATCAAGGAGTACGAACGAACGTGCGTATGAGCCAATCCGTGATGACTTCCTCCCATGTTTTTCCAATCGAAAGGAGAAGGAAAATAGCAAACATCACATGTCCCAGTAACTGCTGCTAAAGCTCTTAGTTTGTTAAATCTTCTCGACTGGTAGAACTAAGTATTTGGGGGGAGGGAAGCACAACGATGGCAATAGGGGGATAGCCGCTCATTTGTGCAGTGTAATGTGCGTCCCTTCTTTTTGGTCGAGATTTCAAATCGAAACTCCATTGAGCAGCATATATTTGGATAATAAAGCGCTGTTGCGGGGCTGAATAGCTGAGAATACGCTGAAGAAGGACTGAAGGAGCAAGGATTTTGATAACTTGGATGGAGGGCAAGCAGCACTCAGTCACTGTGGATTAACTCGGCGTAGAGGCACAGCGGGGGAAGTGCGTTTAAGGTGCAGAGGTGCAAAGGTCTCCCTGCTGAGAGTTGATCCGAGTTCCCCATAGCAGCCACTTTATCGCACTCGGCTGCAGAGACGTGCGATCGGCTAAATAGAGCAAGCCGGTGTTACTGCGGAGGAAAGCCTCTACTGTTGTGAGGTGTGTCGACGAGCGGCAGGAGAATGGCAAGGGCTTTAGCGAGTCTGAGGGAAAACCAAACGCCCGTTTTTCAGCAAAGGATTCTGTCGAACCGCGTTGGAATTTGACTCTTTCTGTGTTGGTTTATTTGGATCTTTATTTTAAACTCGGAAGAAAAGCACAAGTGGATTGCATTCTGAGGGGTACAAACCAATGGCAAATTACTCGGGCACTCTGAATAGATGGCTTTGTGCGCTATGAAATCCAGCGCACCTTGTATCGATATAATTTAGCCAAAATCCAATGGAGCAAAACAAAAAGGAACATGGGAAAATATGAAATGTGAGAAAATTCGATTCCCCTGACCCTCTGTGCTCAGATCAGGACTGGCGTTCCTTCTTCAAGGTGTTTGAACCTGACTTACAATGGAAAAActgctggtctgtctgttggttaTCGGAATAGCAGTGAAGGCCCAGATCTGTCCGAAGCGCTGTGTCTGTCAAATACTATCTCCCAACCTCGCAACCCTCTGTGCCAAAAAAGGGCTCCTCTTTGCCCCCCCGAACATTGACAGGCACACTGTGGAGCTGCGGCTGGCCGACAACTTCGTCACCAGCATCAAAAGGAAAGACTTTGCCAACATGACCAGGCTGCAGGACCTTACCCTGTCCAGGAATACCATTAGCTTCATCACGCCGCATGCATTCGCTGACCTGGAGAACCTCCGCGCCTTGCACCTGAACAGCAACCGTCTAACCCGGATAGCCAATGACACCTTCAGCGGCATGTCCAAACTGCACCACCTCATCCTCAACAACAACCAGCTGACGTTGATCCACCTGGGGGCCTTCAATGACCTGCTGGCCCTGGAGGAGCTGGACCTGTCCTACAACAACCTGGAGTCCATCCCCTGGGAGGCTATCCAGAGGATGACCAGCCTTGCCACCCTCAGCCTTGACCACAACATGATCGACTACATTCCTGAGGGGACCTTCTCTCTTCTCCAAAAGCTCAACCGCTTGGACGTGACCTCTAATAAGTTACAGAAACTCCCTCCTGATCCTCTGTTCCAGCGGGCCCAGGTTTTGGCCACATCTGGGATCATGAACTCTCCCTCGTTCGCGCTGAGCTTTGGTGGGAACCCATTGCACTGCAACTGTGAGCTGCTGTGGTTGAGGCGCCTGAGCCGAGAGGATGATCTGGAGACATGCGCCTCACCGCAGCATCTCTCCGGACGCTACTTCTGGTCTATACCTGAGGAGGAGTTCCTGTGTgaacctcctctcatcacccgGCACTCCCATGAGATGCGGGTGCTGGAAGGCCAGAGGGTGGTCTTGAGGTGCAAGGCCCGGGGGGACCCTGAGCCTGCCATACACTGGATCTCCCCAGAGGGGAAGCTGGTGGCAAACTCCTCCCGAACGCTTGTGTACACCAACGGCACCCTGGATATTCTGATCAGCACAGTGAAGGACACAGGATCCTTCACCTGCATCTCGTCCAACCCGGCGGGTGAGGCACATCAGACTGTGGAGCTGCTGATTATCAAACTCCCACACATCTCCAACAGCACCAACAACATCCAGGAGCCTGACCCTGGCTCCTCGGACATCTCCACATCCACCAGGGCTGGGGCCAACGGCAGCAACCACACTGGAGACACCAAAACTAGTACAGATAAACGGGTGGTCATCGCCGAGGCCACATCCTCCACTGCGCTGATCAAGTTCAACTTCCAGAGGAATATACCTGGGATCCGGATGTTCCAGATTCAGTACAATGGCAGTTATGATGACTCTCTCGTTTACAGaaTGATTCCCCCCACAAGCAAAAACTTCCTAGTCAACAACCTGGCTGCTGGGACGTCGTACGACCTGTGTGTTCTGGCCATCTACGACGACGGTATCACCTCCCTCACCGCCACCCGCGTGGTGGGCTGCGTCCAGTTCACCACAGAGTCTGAGTACCTGCGCTGTCACTTCATGCAGTCCCAGTTCCTGGGAGGCACCATGATCATCATCATCGGTGGCATCATCGTGGCCTCTGTCCTCgtcttcatcatcatcctcatgaTTCGCTACAaggtctgcaacaccactaactCGGGCAAAGGCACCCTTGTCACCAACGTCCACTCACAGACCAACGGGGCGCAGTCTCAGGGGTGCACTGTCACACCCTCTGTGTCCAAGCAGGCCATGGGAGGGTCAGacggagggggtggaggatgtcTAAAGGCTGTTGGCCACGTGTCAGACACGCTAACGCACTCATCCGAGACCTCTCTCCCAGACTGCTCTACTGCTACGTCCCAGGTGACCCAAAGCTGGAACACACCTGGATCCTCAGGGTCTCTGAAGCCAAAGCGCAAGCCTGCACCAAAGCCCTACGCTGCTGCTGCCACCCCTGAGCCCAATATAGAGGCCCTCCCCAACGCGGAGACCCAGAATACCAACCGCAACAACTCCACGGCTCTGGAGCAGCCGTGCGCCCCAGTATTCCACTCCCCCCTACCCTTTTCGAGTGTCAAGGACACCCCCATATTGAGACGTGCACACCCCAGACCCTCCTCCAAGTACCTGACCTTACCGGTGGAAGGGGTGAGGGCCAAACGTAGGTACTCTCTAAACGAGGACTCGTCCAAGCACCACTGCTATGTTGGGACAACACAATTTGGGAATATGTGGTCTAAGCGGAGTATGTCCATGAACGGGATTGTACTTCAACAGGAAGATATAGACAGTGTAAAGGCCACCTTTTCCAGTTCAGAGTGGATTCTAGAAAGCACTGTgtgactgttctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagttgggAAATCTGTTTTTgaaccattttcttttttttctcctcgGGTTTCAGTTTACTTTTATTTTCAAAGACCAACAATAAAATGGATGCTTGCCTTGTAGGAATCAGAATTGCATCCCTGCTTTCCTCCGATGGAGAAAATCTCCAGGAGGGCTCGGAGCCCAGAGCTCAGCAGTGTTTTCATACCCATACAACAAAGAAACGAAAAAGGAAAACATTGAGAAAAAGAAAACCAACATACCTGTCCACTTATACATTACATAGTCCCACTGTTAAAGTCGTGGCAAGAGAAACGCATTGGTGCCTTACCTTTGCATAACAGTTGTCCTTTTGCCAGGAGCACCAACAGGAATTCAGCTGTCCCTGACACAGGATGTGGGATCGAGAGGAACAAGAACGATTTCACAAAAAGCCTTTCTATTACAAGGAAATAACATTTCCTGCATATAGAGACAATACAAAAAAACTATCAAAGACTTGTTACTTGGCCTCTTATTAAATTGATATTTTTTCAAGACAAATTCAAGCTTTCTTTTCAATGACATTGATATTGCCTTTGTTTAAAGGCACAAAAAAAAACTGTACATAGAAACAACATCtgctgtgttgttatgttgtgtaaaataaaaaatatgaaataa
>TU2252391
tgtgtgtgtgtgtgtgtgtgtgtgagagttgggAAATCTGTTTTTgaaccattttcttttttttctcctcgGGTTTCAGTTTACTTTTATTTTCAAAGACCAACAATAAAATGGATGCTTGCCTTGTAGGAATCAGAATTGCATCCCTGCTTTCCTCCGATGGAGAAAATCTCCAGGAGGGCTCGGAGCCCAGAGCTCAGCAGTGTTTTCATACCCATACAACAAAGAAACGAAAAAGGAAAACATTGAGAAAAAGAAAACCAACATACCTGTCCACTTATACATTACATAGTCCCACTGTTAAAGTCGTGGCAAGAGAAACGCATTGGTGCCTTACCTTTGCATAACAGTTGTCCTTTTGCCAGGAGCACCAACAGGAATTCAGCTGTCCCTGACACAGGATGTGGGATCGAGAGGAACAAGAACGATTTCACAAAAAGCCTTTCTATTACAAGGAAATAACATTTCCTGCATATAGAGACAATACAAAAAAACTATCAAAGACTTGTTACTTGGCCTCTTATTAAATTGATATTTTTTCAAGACAAATTCAAGCTTTCTTTTCAATGACATTGATATTGCCTTTGTTTAAAGGCACAAAAAAAAACTGTACATAGAAACAACATCtgctgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585156.2 False 4304 mRNA 0.50 3 28548548 28601863
TU2252391 True 636 lncRNA 0.38 1 28601195 28601830

Neighbor

gene id symbol gene type direction distance location
pnn LOC100380709 coding upstream 442172 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 449289 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 482882 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 497422 28041601 ~ 28051126 (+)
nfkbiab LOC106611175 coding upstream 539067 28006450 ~ 28009481 (+)
LOC110504335 LOC106611218 coding downstream 499199 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 504344 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 527180 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 670139 29272002 ~ 29274608 (+)
adprs adprhl2 coding downstream 719471 29321334 ~ 29326173 (+)
G1970181 NA non-coding upstream 290 28547774 ~ 28548258 (+)
G1970180 NA non-coding upstream 845 28547431 ~ 28547703 (+)
G1970179 NA non-coding upstream 1274 28546926 ~ 28547274 (+)
G1970178 NA non-coding upstream 1900 28546309 ~ 28546648 (+)
G1970176 NA non-coding upstream 5114 28543076 ~ 28543434 (+)
G1970470 NA non-coding downstream 170772 28772635 ~ 28772950 (+)
G1970601 NA non-coding downstream 255218 28857081 ~ 28861957 (+)
G1970675 NA non-coding downstream 354075 28955938 ~ 28960970 (+)
G1970759 NA non-coding downstream 383124 28984987 ~ 28985249 (+)
G1970767 NA non-coding downstream 387656 28989519 ~ 28989724 (+)
G1970001 NA other upstream 134629 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 1460232 26988390 ~ 27099710 (+)
G1967965 NA other upstream 1893212 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2715227 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3756954 24788926 ~ 24791594 (+)
G1971104 NA other downstream 872257 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1721650 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2028465 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2035191 30637054 ~ 30655039 (+)
G1972245 NA other downstream 2057541 30659404 ~ 30679995 (+)
G1970209 NA non-coding upstream 19740 28580575 ~ 28581455 (+)

Expression


Co-expression Network