LOC110504335 (LOC106611218)


Basic Information

Item Value
gene id LOC110504335
gene name LOC106611218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29101062 ~ 29106042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583111.2
TTCGCGCTGCTCAAACTTGGAAGCAAACGCCAAACACTGATACAAGTCAACGAAGCTAGCTATTTGCATATATTTTACATTCGACATGGCATCTTGCTTAGTGCCTGACTTTCCAGCTGTTCTGGTTGCTTTGGAGCATTTGGGCGAATTAGACAAGCAGCTGAGGGATGAGGGAGTTCCATTCAGTCCTGAGGCCAGTCATCACCTGAAAGAAATAGCTGCTGCCATCACTGAACTGGAGACTTCCAGAAGAGTAGTCCATGAACAACTGGAGGTAGAAACTATTGAAACAAGCAAGCTCCGACATCAATGCCAGAATATCCATGATGATGTTCAGAATGAGATATCAGCTGGTGTTGCGGCTGCAAGAAATATAAATGCGGGTCAAATTACTCAACTCCAAGATGAACTGAACAGTATAGTGCAAGAAATAGAATTAATGGAGAAAAAACAGGAAGTCCTTGAAAAGCAAAATGCTATTCTTTATCCTGAGAGAGAGTTGGCAAAAGGTGACCATGAAAATGTCATCAACCAATTAAACTACCAGCTGTCAGAGAAGGCCAATAAACAGATTCTGCTCAATGAAACAATGAATGAGATCAAAGAAGGGAAAGCCAAGATCACAGATGTGGAGAACACTAAAGTGGAGCTAGAGGAAGACATGATTCAAGAGAGGAAGATGTTTGTTGAAACAAATGAGAATCTTCAGAGAGAGTGTGAGGAAGTCATCAATAACATacaggaccagaagaagaacaatgagAAGAAACGCAGGGAGCTGGACATTTTTTTAGCAGAACTGTTGGATAAGGAGGACAAAGTCACAGAGCAAAAAAAAGCAAGTGAACTGAAGTATTTCAGTGAAGTAGTAAATTAATTACATTTTCCACTAATGCTCTTCACTTGCTATAACTGCCttttttattcatgtatagtatGATataaacagtggtgtaaagtaactaagtaaaaattgtgctacttaagtcgtttttggtgaatctgtactttacttaacgatatatatttttgactacttttactccactacataactaaagaaaatatgtacttttcACTCCCATAAATTTTCCctggcacccaaaagtacttgtgacattttgaatgcttagcaggacaggaaaatggtccaattcatgccaTTATCAagacacgtggtcatccctactgcctctgatctggcactcactaaacacaaatgcttcgtttttAAATGATatctaagtgttggagtgtgtccctggctctccgttaa

Function

NR:

description
coiled-coil domain-containing protein 175-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583111.2 True 1276 mRNA 0.39 6 29101062 29106042

Neighbor

gene id symbol gene type direction distance location
LOC110505743 LOC106611182 coding upstream 499199 28548548 ~ 28601863 (+)
pnn LOC100380709 coding upstream 994686 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 1001803 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 1035396 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 1049936 28041601 ~ 28051126 (+)
ccdc175 LOC106611218 coding downstream 165 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 23001 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 165960 29272002 ~ 29274608 (+)
adprs adprhl2 coding downstream 215292 29321334 ~ 29326173 (+)
LOC110505757 cinp coding downstream 220232 29326274 ~ 29334901 (+)
G1970843 NA non-coding upstream 50387 29050463 ~ 29050675 (+)
G1970817 NA non-coding upstream 69224 29031426 ~ 29031838 (+)
G1970793 NA non-coding upstream 94448 29006365 ~ 29006614 (+)
G1970789 NA non-coding upstream 96311 29004390 ~ 29004751 (+)
G1970783 NA non-coding upstream 100569 28999776 ~ 29000493 (+)
G1970898 NA non-coding downstream 37825 29143867 ~ 29144796 (+)
G1970921 NA non-coding downstream 70362 29176404 ~ 29176711 (+)
G1971035 NA non-coding downstream 106668 29212710 ~ 29212925 (+)
G1970001 NA other upstream 687143 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2012746 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2445726 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3267741 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4309468 24788926 ~ 24791594 (+)
G1971104 NA other downstream 368078 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1217471 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1524286 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1531012 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1553362 30659404 ~ 30679995 (+)

Expression


Co-expression Network