ccdc175 (LOC106611218)


Basic Information

Item Value
gene id ccdc175
gene name LOC106611218
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29106207 ~ 29114965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962819.1
tactcaagtagtactttactgggttactttcacttttacttcagtcattttatattaaggtatcttgACAATTGTCACTATCTCCACCACTGGATTTAAATACATATTTATAAATTGTGTTATTTCACCCAACACTCTTCCTTCATTGCAGCACATTGTCCAGTTAGAGCAAAGTATAGCCAAACTGACAGCGTCTGAAATCCAATACAAAGAGCAGCTGGCAGACGAGATCAACACATTTGAGGAACTTGTTCTTCAGAAGTAAGATTTGCATTCATCCAGGTACTGTATGTTGCGTAAGCATGGAGCATACATGGAATGCAagggatactgtatgttacaACATGTCTGCTTCCATCATTCCAGATTTTTCGACTCATTAACCATTGTTTCCACAGGGAATTTCATGTAAAGGAGTTGGCTGAAGTGAGAATTGTATTTGAACTGAAAGTTCAGGCACTACAGGAAAAGATTGTAGAGGTGGATGGTGAGATGGAGGAGGGCCAGATAGTGAATGCCATCCGCCTGGAGTCTATTGCTAAGATGTCTGACAGATTTAAAGCTCAAAGGAAAGAGGAGGACGACGTCATGGCTGAACACCTCAATGTCTCAAGACGCTTAGAAAAGTCCAGACTTAGACTTGAGGAGCGCATTGCATCGATTGCTAAACATAAAATTGAGATCAGAGAAATGGATGAAGAGATCAAACAACTCCATGAAACCAATATAGTTAATGCAGACCTGTTTGAAAGAAATGTGGAGGAACTGCATGGACAGCTCAATAAAGAAAAGAACAACATAGCGATCTTTGAAGTTGAAAAAGAAGTACTGTGCCAGTCTCTGGAGAATCTGAAAAAAGATCAAGTACAGCATGTGAAAGAGGTCAACTCTAATATTGGTTTAACCAGGAGGAGATATGAGGAACTGCTTGAAGAGGAGAAGAAACTCAGAGAGCATGTATTCATGGGCGCGTTGATTGAACGTCTCAGTAACAAGATTGTTAAGGCAGAGGAGGGGTATGAACAGATGACCATTTCCTACAATGCCGAGATCCAACAGTTCATcACTGAAGCGGAGTCAGTGATACAGAGCCgactggagaaggaggaggacctGAAGGGTAAAGAGTCTATCTTGGAGGATGCGGAGGCCCAGTTTGACATTGACCAGTCCAGGCACCAAAAACTAAAAAACCATACCTCAGAGTTAAAGAGTAAGAACAATCATCTGGAGCTCTTCATCCAGGATATGAAAGAGAGGACTAGTACTCTTCTCAAACCAAAGGAGGACATGAAGAGGAGTCTAGAGGGTTTGCGTGAGAAACACATGGAGCTGCTGACGTCTCACACTGCAAACATCATCGCCACGGAGAAGAGCATCTATGACAACGGGATGATGCTGGAGCAGGTCAATATGGAGAACAGTAGACTGCATGTGTGTATTGAACAAATGAAGGAGGACATATGGAACACCAGGAAAGACCAGGAAAGACACACAAAGGAGATTGGGTGGCTGAAAGAGGAGGTTCATTCTCTATTTGAGAGCCTGCTTGATGCTTGGGCAGAGGACACTGTGGTGACTGAGGAATCTTCAGAGAGAGACCACAAGATTCTGGAGGCTATCTACAGACTCATGACCAAGATCCACGACAGGAAGTTCCAACTGGGGGATATCaacagtagactagaggaggaaCTGAAGGGCATGAGTTCCCTGTTAGCCAGTAATAAATCAAACATTGCACTTAAAGAACAGGGCAACTAAAGTGAGATATCAAGAAGGATTACATCAACACAATTGTTTTGTTATAAAAAAACTCAGCACAAGTGAAAGTCATATGAGATGAAAGTAGATGAGTACACACTTCTGATTTTATTTCAGAAAAATCATACTTTATAA
>XM_021585157.2
caagtagtactttactgggttactttcacttttacttcagtcattttatattaaggtatcttgACAATTGTCACTATCTCCACCACTGGATTTAAATACATATTTATAAATTGTGTTATTTCACCCAACACTCTTCCTTCATTGCAGCACATTGTCCAGTTAGAGCAAAGTATAGCCAAACTGACAGCGTCTGAAATCCAATACAAAGAGCAGCTGGCAGACGAGATCAACACATTTGAGGAACTTGTTCTTCAGAAGGAATTTCATGTAAAGGAGTTGGCTGAAGTGAGAATTGTATTTGAACTGAAAGTTCAGGCACTACAGGAAAAGATTGTAGAGGTGGATGGTGAGATGGAGGAGGGCCAGATAGTGAATGCCATCCGCCTGGAGTCTATTGCTAAGATGTCTGACAGATTTAAAGCTCAAAGGAAAGAGGAGGACGACGTCATGGCTGAACACCTCAATGTCTCAAGACGCTTAGAAAAGTCCAGACTTAGACTTGAGGAGCGCATTGCATCGATTGCTAAACATAAAATTGAGATCAGAGAAATGGATGAAGAGATCAAACAACTCCATGAAACCAATATAGTTAATGCAGACCTGTTTGAAAGAAATGTGGAGGAACTGCATGGACAGCTCAATAAAGAAAAGAACAACATAGCGATCTTTGAAGTTGAAAAAGAAGTACTGTGCCAGTCTCTGGAGAATCTGAAAAAAGATCAAGTACAGCATGTGAAAGAGGTCAACTCTAATATTGGTTTAACCAGGAGGAGATATGAGGAACTGCTTGAAGAGGAGAAGAAACTCAGAGAGCATGTATTCATGGGCGCGTTGATTGAACGTCTCAGTAACAAGATTGTTAAGGCAGAGGAGGGGTATGAACAGATGACCATTTCCTACAATGCCGAGATCCAACAGTTCATcACTGAAGCGGAGTCAGTGATACAGAGCCgactggagaaggaggaggacctGAAGGGTAAAGAGTCTATCTTGGAGGATGCGGAGGCCCAGTTTGACATTGACCAGTCCAGGCACCAAAAACTAAAAAACCATACCTCAGAGTTAAAGAGTAAGAACAATCATCTGGAGCTCTTCATCCAGGATATGAAAGAGAGGACTAGTACTCTTCTCAAACCAAAGGAGGACATGAAGAGGAGTCTAGAGGGTTTGCGTGAGAAACACATGGAGCTGCTGACGTCTCACACTGCAAACATCATCGCCACGGAGAAGAGCATCTATGACAACGGGATGATGCTGGAGCAGGTCAATATGGAGAACAGTAGACTGCATGTGTGTATTGAACAAATGAAGGAGGACATATGGAACACCAGGAAAGACCAGGAAAGACACACAAAGGAGATTGGGTGGCTGAAAGAGGAGGTTCATTCTCTATTTGAGAGCCTGCTTGATGCTTGGGCAGAGGACACTGTGGTGACTGAGGAATCTTCAGAGAGAGACCACAAGATTCTGGAGGCTATCTACAGACTCATGACCAAGATCCACGACAGGAAGTTCCAACTGGGGGATATCaacagtagactagaggaggaaCTGAAGGGCATGAGTTCCCTGTTAGCCAGTAATAAATCAAACATTGCACTTAAAGAACAGGGCAACTAAAGTGAGATATCAAGAAGGATTACATCAACACAATTGTTTTGTTATAAAAAAACTCAGCACAAGTGAAAGTCATATGAGATGAAAGTAGATGAGTACACACTTCTGATTTTATTTCAGAAAAATCATACTTTATAA
>TU2253117
CACACTTCTGATTTTATTTCAGAAAAATCATACTTTATAACACTGCATTTCACAAGTTTTTTTGAACAATACATTTTACAAGTCAAAGTTGTAGCTAGTCAAGTCCTCGTTCTGTATGTTTTACACtgcaataaaaatatatatttctaatAAACACATCCATTGTCATCTATTTACAAGCATTCTATGAGCATGCATAAAATACATTCACAATTTAATTTCCTTACTATCCAGCAAGCGTATTTCCCCAACATAATTTACGGGGAAACAGCAGGATAATTTTCATTCCATTTTTGATACCCACATCCATCTATAATAGTTCTAGTGGCCGTTGCCGCCTTCTGACAGAATCCGGCTAGGTTCAGTGAACCTGGCAGTGAGCAGGTAGAAAAGGGCGGGTCCAGGTACCAGGGCCAATAGAGGTAGGTCCTGCTCCAGTTTATCCAATCGGGAGATGGAGATGATGCCATACGCGTGAAGTAGCCAATGGCTGAAGAGCACCACCAACCTCTTCTTCTTGGCAGCGAGATTCTTG

Function

NR:

description
JNK1/MAPK8-associated membrane protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962819.1 False 1899 mRNA 0.42 12 29106207 29113664
XM_021585157.2 False 1758 mRNA 0.42 13 29106211 29113664
TU2253117 True 535 lncRNA 0.40 2 29113625 29114965

Neighbor

gene id symbol gene type direction distance location
LOC110504335 LOC106611218 coding upstream 165 29101062 ~ 29106042 (+)
LOC110505743 LOC106611182 coding upstream 504344 28548548 ~ 28601863 (+)
pnn LOC100380709 coding upstream 999831 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 1006948 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 1040541 28058192 ~ 28065667 (+)
LOC110505748 gpr135 coding downstream 15379 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 158338 29272002 ~ 29274608 (+)
adprs adprhl2 coding downstream 207670 29321334 ~ 29326173 (+)
LOC110505757 cinp coding downstream 212610 29326274 ~ 29334901 (+)
LOC110505758 tecpr2 coding downstream 228787 29342451 ~ 29377849 (+)
G1970843 NA non-coding upstream 55532 29050463 ~ 29050675 (+)
G1970817 NA non-coding upstream 74369 29031426 ~ 29031838 (+)
G1970793 NA non-coding upstream 99593 29006365 ~ 29006614 (+)
G1970789 NA non-coding upstream 101456 29004390 ~ 29004751 (+)
G1970783 NA non-coding upstream 105714 28999776 ~ 29000493 (+)
G1970898 NA non-coding downstream 30203 29143867 ~ 29144796 (+)
G1970921 NA non-coding downstream 62740 29176404 ~ 29176711 (+)
G1971035 NA non-coding downstream 99046 29212710 ~ 29212925 (+)
G1971043 NA non-coding downstream 103151 29216815 ~ 29217121 (+)
G1970001 NA other upstream 692288 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2017891 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2450871 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3272886 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4314613 24788926 ~ 24791594 (+)
G1971104 NA other downstream 360456 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1209849 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1516664 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1523390 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1545740 30659404 ~ 30679995 (+)

Expression


Co-expression Network