LOC110504220 (LOC106601062)


Basic Information

Item Value
gene id LOC110504220
gene name LOC106601062
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29217381 ~ 29221732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504220
ATGGGTTTTGCAGTGTGGGATGATGCTAATGATGAGGCCCTGCGTCTGACCCAGACTGATGGCCTGACCAATTGTATGTTCCACCCTTTGACCATCCTCTGCTCTGGTGAGAAGATATTTAAGTCAGACAAATCCTTAACTGAGCCTGAGGTGGGCTGGGGCAGTGTGCCCATCATCTGTGGAGGCTGAGGGAGCAGGCTGTTTTAATGCAGCAGTAAAGGCTGCCAGGATGGTCACCCTCCCTGACATCACGTCAGAGGCCATGTGTCTGAGTTCGAAGACGGTGTGAAGGCAGGCCTTTGAGTGCAGTAAGGGGGGCAACATGAACATCATATCAGAGCTGGTCACTGACCAGCAGGCTCTGCAAGTAGTGGAGACCTTCCTGGacgaGGAGCGTGTGCTGGTGGAGCTGGCCTGCGGGGCTGCATTAGCAGCTGTGTACTGTGGGGTCATCCAGAGTCTGCAGGGTGAGGGCCGGCTGCCCGTTCCCCTAGCAGGGCCTCTGGTGATGATCGTCTGTGGAGGCAGCAGCGTCAATCAGGCACAGCTGGAACATCTCAGGAAGGTCCTCAATAGATGAACACAGAAAATGGAACCATAGAATTAGATAAACCTTAGAAGAACACAGTTTGGAAAACCAGacag

Function

NR:

description
L-serine dehydratase/L-threonine deaminase-like

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0003941 L-serine ammonia-lyase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504220 True 645 mRNA 0.54 5 29217381 29221732

Neighbor

gene id symbol gene type direction distance location
daam1a daam1 coding downstream 11159 29135361 ~ 29206222 (-)
LOC110505745 LOC106611187 coding downstream 95204 29113615 ~ 29122177 (-)
ctage5 LOC106611179 coding downstream 1123146 28066100 ~ 28094235 (-)
fam177a1 LOC106611178 coding downstream 1163864 28050988 ~ 28053517 (-)
LOC110504219 LOC106611176 coding downstream 1177356 28014417 ~ 28040025 (-)
ptp4a2a LOC106611191 coding upstream 45320 29267052 ~ 29270880 (-)
si:ch211-266o15.1 LOC106611192 coding upstream 68972 29290704 ~ 29321008 (-)
znf839 znf839 coding upstream 112940 29334672 ~ 29339921 (-)
LOC110505761 ankrd9 coding upstream 156547 29378279 ~ 29380539 (-)
LOC110505765 LOC106611200 coding upstream 494870 29716602 ~ 29766891 (-)
G1971183 NA non-coding downstream 214 29216457 ~ 29217167 (-)
G1971038 NA non-coding downstream 3628 29213540 ~ 29213753 (-)
G1971028 NA non-coding downstream 6935 29210114 ~ 29210446 (-)
G1971025 NA non-coding downstream 8356 29207990 ~ 29209025 (-)
G1970839 NA non-coding downstream 170222 29046930 ~ 29047159 (-)
G1971213 NA non-coding upstream 56656 29278388 ~ 29278611 (-)
G1971218 NA non-coding upstream 60354 29282086 ~ 29282319 (-)
G1971239 tecpr2 non-coding upstream 123053 29344785 ~ 29349969 (-)
G1971274 NA non-coding upstream 183248 29404980 ~ 29405604 (-)
G1971302 NA non-coding upstream 229052 29450784 ~ 29454913 (-)
G1970606 NA other downstream 355394 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1073619 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1115945 28099921 ~ 28101436 (-)
LOC110505716 LOC106024658 other downstream 2452010 26716542 ~ 26765410 (-)
G1967882 NA other downstream 2678673 26535364 ~ 26538708 (-)
G1971357 LOC106611199 other upstream 301028 29522760 ~ 29525046 (-)
G1972454 NA other upstream 760552 29982284 ~ 29982900 (-)
G1972746 npas3 other upstream 1285819 30507551 ~ 30508058 (-)
G1972810 NA other upstream 1394856 30616588 ~ 30683403 (-)
G1972851 NA other upstream 1543224 30764956 ~ 30765933 (-)

Expression


Co-expression Network