gjb9a (LOC106611221)


Basic Information

Item Value
gene id gjb9a
gene name LOC106611221
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29272002 ~ 29274608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585171.2
ATAGTATACAGTCCTCACTCCTCACACACCTGGGGCTGGTAGTTTTCCATGTGACACAGGCAGGATttctgagaaaggagagagagatacccgAGGATAGACTCCTGCTCTGTTTGTTCCGCTGGAATATTTACATTTTTCTGATCCCAGTTCATATCCCAAGCCACAGGGATGAACTGGTCAGCACTAGAGAGCCTACTCAGCGGGGTCAACAAGTACTCCACTGTGTTTGGCCgtgtgtggctgtccatggtgTTTGTGTTCCGTGTCATGGTGTTCGTGGTTGCCGCCCAGCGTGTGTGGGGAGACGAGAGCAAGGACTTTGTGTGCAACACCAGGCAGCCCGGCTGCACCAACGTCTGTTATGACAGCATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTCCAGCTCATCTTCGTCACCTGTCCATCTCTCATGGTCATGGCTCACGTCAAGTATCGTGAGGGGAAGGATTCAAAGTACGCTTCCCAGCACCAGGGCTCTCACCTGTACGCCAACCCAGGGAAGAAACGTGGAGGCCTGTGGTGGACCTACCTGGTCAGCCTGATCTTCAAGGCCGTGGTTGACGCAGCCTTCCTTTACATTCTCTACTACATCTACCATGGCTATGACATGCCACGTCTCTCCAAGTGTGCCCTGGAGCCTTGCCCAAACACAGTGGACTGCTACATATCCAGGCCCACGGAGAAGAAGATCTTCACCATCTTCATGGTGGTCTCCTCAGCCGTCTGCATCTTCATGTGCATCCTGGAGATGTTCTATCTGTTGGGAAAGCGGTTACACAAGGTGCTTAAAGTACGGCAGGCCAACAAGAGACTTCTCTTCGCTGAGTGCCATGAGGTGACCAACATCGCTCTGCCGAGGTCATCGTATATCAGGGTAGATCCAACTATTGGGAGCCAGCAGAACATCAGCAGACAGAAGAAGGCAGAGGAGGCTGCTGCCACAAGTCTGTAGTCCTGATCTGTTTGATTTTGGTGCAtatagcactgactttgctgagagctactttattgaggaaaaatttacttagatatgtggttgtcccacctagctatctaaagatgaatgcactaactgtaaattgctctggataagagcgtctgctaaatgactaaaatgtaaatccATATTGCACTGACTTTGGGGTGGCTACTTTATGGAGGAAAAAcatacttactatgactgagatatatggttgtcccacctagatatattaagatgaatgcactaactgtacaTTTTACTCTATACTggagcattttggatttgagatcaagtCTTTTATATGaagcgacagtacagaatgtacCGCTTAGAAATTAAAGGGGGTACAGGGGTACAGGGTTATTGTTGgagatatgtacatactgtataggttggggtaaagtaactaggcaacaggatagataataaaca

Function

NR:

description
gap junction beta-4 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585171.2 True 1443 mRNA 0.48 2 29272002 29274608

Neighbor

gene id symbol gene type direction distance location
LOC110505748 gpr135 coding upstream 139077 29129043 ~ 29136833 (+)
ccdc175 LOC106611218 coding upstream 158338 29106207 ~ 29114965 (+)
LOC110504335 LOC106611218 coding upstream 165960 29101062 ~ 29106042 (+)
LOC110505743 LOC106611182 coding upstream 670139 28548548 ~ 28601863 (+)
pnn LOC100380709 coding upstream 1165626 28099654 ~ 28106376 (+)
adprs adprhl2 coding downstream 46726 29321334 ~ 29326173 (+)
LOC110505757 cinp coding downstream 51666 29326274 ~ 29334901 (+)
LOC110505758 tecpr2 coding downstream 67843 29342451 ~ 29377849 (+)
LOC110505760 rcor1 coding downstream 107105 29381713 ~ 29392098 (+)
LOC110505762 traf3 coding downstream 117948 29392556 ~ 29405607 (+)
G1971041 NA non-coding upstream 50235 29221113 ~ 29221767 (+)
G1971043 NA non-coding upstream 54881 29216815 ~ 29217121 (+)
G1971035 NA non-coding upstream 59077 29212710 ~ 29212925 (+)
G1970921 NA non-coding upstream 95291 29176404 ~ 29176711 (+)
G1970898 NA non-coding upstream 127206 29143867 ~ 29144796 (+)
G1971066 NA non-coding downstream 1500 29276108 ~ 29276731 (+)
G1971071 NA non-coding downstream 7276 29281884 ~ 29282087 (+)
G1971073 NA non-coding downstream 9274 29283882 ~ 29289836 (+)
G1971088 LOC106611192 non-coding downstream 35545 29310153 ~ 29310649 (+)
G1971091 LOC100194703 non-coding downstream 39273 29313881 ~ 29314303 (+)
G1970001 NA other upstream 858083 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2183686 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2616666 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3438681 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4480408 24788926 ~ 24791594 (+)
G1971104 NA other downstream 199512 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1048905 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1355720 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1362446 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1384796 30659404 ~ 30679995 (+)

Expression


Co-expression Network