LOC110505763 (ehd4)


Basic Information

Item Value
gene id LOC110505763
gene name ehd4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29408807 ~ 29451622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585192.2
tgttagagctgTCACCCGAATATCTTGTTAACATAATACTTCATCTTCGCACAGGCACCACTGTGGGGCGAACCACTGCAACGCTGTGAACTACTGCGCCGCACAGAGGAGCTACTGTAGAGAGCAGCCATCAAGCAGTGTTGGGAAAACAACCGTAGATTCTAGATGCCACGTTTTTCAGTTGCCAAATAACATATTTGATTCAAAGTAACAGTGCCCATTTTTGTAAGATATTCGGATACAAAGTAGCCTCGTTGCGCAAACTTTGAAAGCTGTGGAAAATAAGGAAGTAAAACGTTAGTTCTTGATTTGGGAACTTAGAAGAGGAGCATCATCATGTTCAGTTGGGTGAATAAGGAACAAGGAGGCAGAAACAAGGACGGCGAGATGTACCAAACTGTGACGGAGGGTCTTCAACAACTTTACTCAAAAAAATTATTTCCATTGGAAGAAACCTATCTTTTCCATGATTTCCACTCACCTGCGTTGGAGGCAGCGGATTTTCAGAGCAAGCCAATGGTTCTACTGGTTGGACAGTATTCTACGGGGAAGACGACGTTCATAAGgtaCCTGCTGGAGCAGGACTTCCCAGGCATGCGGATTGGCCCAGAGCCCACAACGGATGGCTTCATCGCTGTCATGTACGGGGAGAACGAGGGGATTGTCCCTGGTAACGCTCTGGTGGTCGACCCCAAGAAACCCTTCCGCAAACTCAACGCTTTTGGAAACGCTTTCCTCAACAGGTTAATCTGCTCCCAGATGCCTAACCAGGTCCTCCAGGGCATTAGTATAATTGACACACCAGGAATCCTGTCTGGAGAGAAGCAACGCGTTAGTCGAGGCTATGATTTCTCTGAGGTGCTGCGATGGTTCGGAGAGCGGGTGGACCGCATCATCCTGCTCTTCGACGCCCACAAACTGGACATCTCAGACGAGTTCTCTGAGGCCATCAAGGCTTTCCGTGGCCAGGATGACAAGATCCGCGTGGTGCTGAACAAGGCAGACCAGGTGGACAGCCAGCAGCTGATGAGGGTCTACGGAGCTCTGATGTGGTCCCTTGGGAAAGTCATCAACACACCCGAGGTGGTGAGGGTCTACCTGGGCTCATTCTGGGCCAAGCCCCTGCAGAACACGGAGAACCGGAGGCTCTTTGAGGCAGAGGCCCAGGACCTCTTCAAGGACATCCAGGGCCTGCCCCGGAACGCTGCCTTACGCAAACTCAATGACCTCATCAAACGGGCTCGACTTGCTAAGGTGCATGCCTACATCATCAGCTACCTGAAGAAAGAGATGCCGTCGTTGTTtgggaaggagaagaagaaagaggaacTGATCATGAGACTTCCTGAGATCTACACCATACTGCAGAGAGAGCACCACATCTCCCCTGGAGACTTTCCCAATGTCGTCAAGATGCAGGAGCAGCTCCAGCACTATGACTTCAGCAAGTTCCCCTCCCTGAAGATGAAGCTGATTGAGTCTGTGGACAAGATGTTGGCTAACAAGATCTCCGGCCTGATGACCATGATCCGTGACGAGGAGAGCATGGCACCCCCCGCCATGGTGAGCGGCGGGGCCTTTGAGGGCTCCCAAGACGGTCCCTTCGGCCAGGGCTACGGAGAGGGCATCAGCGCCGGGTCTGACTGTGAGGACTGGATCGTAAGCCGTGACAAACACAAGTACGATGAGATTTTCTACTCCATGAACCCCATCAACGGAAAGATCAGTGGAGTCAACGCCAAGAAGGAAATGATGAACTCCAGTCTGCCCAACACAGTCCTTGGGAAGATCTGGAAGCTGGCGGACTGTGATAAAGACGGCATGCTGGATGACGAGGAGTTTGCCCTGGCGCAGCACCTGATCAAGGTGAAGCTGGAGGGTTACGAGCTGCCCACCGAGCTACCTCACCACCTGGTGCCTCCCGCCCACAGGAAGAACGAGGTCGCTGACATCCTCTACAACCATGACGAGAACTAAAGACAAGCCAAAAAACACCAATGGAGAGGACACTCTATTGTGTCCCAATGCCCAAACTTGTGCACTATGGAGTAtggtgtagaggtcgaccgattatgatttttcaacgccgataccgattactggatgaccaaaaaaagccgataacgATTGATCGGCCGATTTtagaaaaacaaatgtatttgtaataatgacaattacaacaatactaaatgaacacttattttaacttaatataatatatcaataaaaatctatttagcctcaaataaataatgaaacatgttcaa

Function

symbol description
ehd4 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Predicted to be involved in several processes, including cilium assembly; endocytic recycling; and protein localization to plasma membrane. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in cardiovascular system; presumptive telencephalon; and telencephalon. Orthologous to human EHD4 (EH domain containing 4).

NR:

description
EH domain-containing protein 4-like

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12477 EHD4; EH domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585192.2 True 2267 mRNA 0.50 6 29408807 29451622

Neighbor

gene id symbol gene type direction distance location
LOC110505762 traf3 coding upstream 3200 29392556 ~ 29405607 (+)
LOC110505760 rcor1 coding upstream 16709 29381713 ~ 29392098 (+)
LOC110505758 tecpr2 coding upstream 30958 29342451 ~ 29377849 (+)
LOC110505757 cinp coding upstream 73906 29326274 ~ 29334901 (+)
adprs adprhl2 coding upstream 82634 29321334 ~ 29326173 (+)
LOC110505764 LOC106611199 coding downstream 71068 29522690 ~ 29525076 (+)
LOC110505766 LOC106611201 coding downstream 408026 29859648 ~ 29886359 (+)
LOC110505767 LOC106611206 coding downstream 437095 29888717 ~ 29906400 (+)
LOC110505772 NA coding downstream 488457 29940079 ~ 29941170 (+)
LOC110505773 LOC106611209 coding downstream 555739 30007361 ~ 30077294 (+)
G1971091 LOC100194703 non-coding upstream 94504 29313881 ~ 29314303 (+)
G1971088 LOC106611192 non-coding upstream 98158 29310153 ~ 29310649 (+)
G1971073 NA non-coding upstream 118971 29283882 ~ 29289836 (+)
G1971071 NA non-coding upstream 126720 29281884 ~ 29282087 (+)
G1971066 NA non-coding upstream 132076 29276108 ~ 29276731 (+)
G1971354 NA non-coding downstream 70700 29522322 ~ 29522574 (+)
G1971365 NA non-coding downstream 78552 29530174 ~ 29530374 (+)
G1971376 NA non-coding downstream 85647 29537269 ~ 29537535 (+)
G1971380 NA non-coding downstream 87445 29539067 ~ 29539326 (+)
G1971389 NA non-coding downstream 93454 29545076 ~ 29545490 (+)
G1970001 NA other upstream 994888 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2320491 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2753471 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3575486 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4617213 24788926 ~ 24791594 (+)
G1971104 NA other downstream 22498 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 871891 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1178706 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1185432 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1207782 30659404 ~ 30679995 (+)

Expression


Co-expression Network