LOC110505764 (LOC106611199)


Basic Information

Item Value
gene id LOC110505764
gene name LOC106611199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29522690 ~ 29525076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585193.2
GTTGGCTGTAGTCCGTAAAGGTtcaaccaattttttttttacagcgtAGTGTCTGTGGCTCCATAATTAATTGTAGCTATCTGTCTCCTATCGATGTGTTGTAAAGAACATGAAATAGTTTTTATTAGCAGAGTTGCCGGTGTAAGATATTGAGATATAACTGTGCTGCTGCTTATTGCAATTTGACCTTGCGTGTGATGTTGGATATGGGAGAACGGAAAGAAGTGAAAATGATTCCTAAATCATCTTTCAGTATAAACAGTCTGGTGCCTGAAGCCGTCCAAAGTGACAACCACCACAGAACCGTGTCAGAAGAAGAGGGGAAGATCCCTTTACCTTCTTCAGTGCAAGATGCAAAGTCAGAGAACATTTGCACCAAAAGTGACAATTCGTCCAATGAAACCACTTGCATGGATGAAAAGGAAAaacaggaagagaagaaggatagcaaagagggagagagcggtgGGAAAGACGGTGAAAAGAAAAACGGCAAGTACGAGAAACCACCATTCAGCTATAATGCTTTAATTATGATGGCTATTCGGCAGAGTCCGGAGAAACGACTAACTCTGAACGGTATTTACGAATTCATTATGAAGAATTTCCCCTATTACCGGGAGAACAAGCAGGGTTGGCAGAATTCCATCAGGCATAACCTTAGCCtaaacaaatgttttgttaaaGTCCCGCGGCACTATGATGACCCGGGTAAGGGGAACTACTGGATGCTTGACCCCTCGAGTGACGATGTGTTTATCGGTGGGACAACAGGCAAACTTCGCCGGAGATCGACCACATCCAGGGCAAAGTTGGCTTTCAAGCGGGGTGCTCGTCTTACTTCCTCTGGGTTGACCTTTATGGATAGAGCCGGCTCTCTATATTGGCCAATGTCACCATTTCTTTCGCTTCACCATCCGAGGGCCAGCAGCGCATTGAGCTACAATGGGACATCATCGGCTTACCCTAGTCATCCTATGTCCTACAGTACAATGTTGACTCAAAACAGTTTGGGGAACAACCATTCTTTCCCTTCTTCCAATGGCCTAAGTGTTGACAGACTTGTGAATGGAGACATTCCCTATGCCACTCATCACCTAACGGCAGCGGCATTGGCGGCCTCTGTGCCATGTGGTCTATCAGTGCCCTGCTCCGGGACATACTCTTTAAACCCATGTTCGTCCATAAACCTCCTTGCAGGACAGACAAGTTACTTTTTCCCCCATGTCCCGCATCCATCAATGACCTCCCAGAGCAGCGCTTCGATGGCGGCCAGGGTTGCATCCTCCTCCCCGCAGGCGCCCTCATCTCTTCCCTGTGAGTCTTTAAGGTCTTCGCTACCAAGTTTCTCTTCAGGACTTTCTGGAGGACTTTCTGATTACTTCACACATCATAATCAAGGGTCAACTTCAAATCCACTTATACACTAACAAAACATCCCTCGGGAGCAAGACTGTAAGTGAACATTTTACACCCGTTTACATTCTAAAACATATAAAGAAAATATAAAGTAAACAAAGAGAAAAACAAAATGAAAGCAGCCAGAACTGAAGTCCAGGTATTTTTTAATAATATTCTGCATTTATTTCTGTGTACGTAGGCATATGTCATGTTTCGGGGAGTTGTTTATTATTCCACCGTCAGCAACGTGCAATGTGATAACAAAAAAATAAGAGTACATGTAGGTTTTGGACTGAGAGGCATTACCTTAGAATGTGTATTTAAATAGTCTGCAGATTTGCCTAATTTTAATATTAAGAATATCTAATACCATCACATCAACCACCAGTCTCCATGTTTGCAGTATTATCACGTATCATGAGTGCACTGGTGGAATATGAtttttgcaacaacaaaaaaataacactaatttgtattatttttccttttgaaataaatgtgtttttaaaaTGCAGAATAACCATACCAACCCAtggctctttgttattttgtccTCTCCCATTATGAACAAATTAGGCTAGTACTTTATGACATTCATTTATATATTACATTTTCACAATACTGTTATACTTTATAGACCAAAGAATGGGTTTAGAAAAAATACTTGAGAATTTCAGTATTCAGCACCAGAACAGATTCAGAAGGGGACAAAATGAATGAATGCCTTTAGCTTGTGTTGTGCATATTTTACTGAATGTGGTCACCACCAGACCACATCCTTTTGTACTTAGTGAACTGTCAATACCTATTGTAATTATAGGTTAACTTTGCGAACGTGTAACCCGTGTTGAGCAAACGCCTCATGCAAATATGGAGTGATTGTTTATGTTGTCTTTAAATTTCATGGTTGTGATATTGTGGTCTTATTCCCGTGTTTTGTCGCTAAAACTGTCAAtcgaacaaaataaaataataggtTACGTCCA

Function

NR:

description
forkhead box protein G1-like

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585193.2 True 2387 mRNA 0.41 1 29522690 29525076

Neighbor

gene id symbol gene type direction distance location
LOC110505763 ehd4 coding upstream 71068 29408807 ~ 29451622 (+)
LOC110505762 traf3 coding upstream 117083 29392556 ~ 29405607 (+)
LOC110505760 rcor1 coding upstream 130592 29381713 ~ 29392098 (+)
LOC110505758 tecpr2 coding upstream 144841 29342451 ~ 29377849 (+)
LOC110505757 cinp coding upstream 187789 29326274 ~ 29334901 (+)
LOC110505766 LOC106611201 coding downstream 334572 29859648 ~ 29886359 (+)
LOC110505767 LOC106611206 coding downstream 363641 29888717 ~ 29906400 (+)
LOC110505772 NA coding downstream 415003 29940079 ~ 29941170 (+)
LOC110505773 LOC106611209 coding downstream 482285 30007361 ~ 30077294 (+)
LOC110505775 LOC106611224 coding downstream 567379 30092455 ~ 30330735 (+)
G1971354 NA non-coding upstream 116 29522322 ~ 29522574 (+)
G1971091 LOC100194703 non-coding upstream 208387 29313881 ~ 29314303 (+)
G1971088 LOC106611192 non-coding upstream 212041 29310153 ~ 29310649 (+)
G1971073 NA non-coding upstream 232854 29283882 ~ 29289836 (+)
G1971071 NA non-coding upstream 240603 29281884 ~ 29282087 (+)
G1971365 NA non-coding downstream 5098 29530174 ~ 29530374 (+)
G1971376 NA non-coding downstream 12193 29537269 ~ 29537535 (+)
G1971380 NA non-coding downstream 13991 29539067 ~ 29539326 (+)
G1971389 NA non-coding downstream 20000 29545076 ~ 29545490 (+)
G1971394 NA non-coding downstream 22564 29547640 ~ 29547847 (+)
G1971104 NA other upstream 44307 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1108771 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2434374 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2867354 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3689369 25831576 ~ 25833321 (+)
G1972242 NA other downstream 1105252 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1111978 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1134328 30659404 ~ 30679995 (+)
G1972252 NA other downstream 1170157 30695233 ~ 30696314 (+)

Expression


Co-expression Network