LOC110505765 (LOC106611200)


Basic Information

Item Value
gene id LOC110505765
gene name LOC106611200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29716602 ~ 29766891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962945.1
CACCGCTCAGCTCTTCTTTCCTCTCGCATCACCCTGTCTCACTGATGATGAGATCTATCATCTGTCAGCCAGGCAGGAGGCGGGCTCTGATCACATCCGAACAATCAAACATAACTGACGTAGGCTATACTTCATCGTCTTTCACCTCTCAAATGATTTAAGAGATTTTTCATAATCTCTCTGATTTCTATCATTCGTTTTATTATCCTTATAATCTCGTCATATTTTGCGTTCATGACACGATCGGAGATTTGACATTTTAGTTTGATATTCAAAACAGGCGGTTGTTTAGCGGTTAGACAAGTACGTAGATTTACACACCTATGTCAAATCGGTATTGTTTTGACTCCCGGGAGATTCATATGAGCGCTCCGCCAGTGATCCGACCGCCAAGTCCCCTGTCCCCGGGGTCCAATGGCATATCTTTCCAGATACAGATCGGGTTGAGCCGCGAGCCTGTTCTTTTGGACTCTGTCGACTTCAGCCTCGCTCAGGTCCGGGAGATGGCATGCTCCATCGTGGACCAGAAGTTACCCGAGTGTGGCTTCTATGGGATGTATGACAAGATCCTGCTGTTCCGCCACGACCCAGGCTCAGAGAACATCCTCCAGCTGGTGAAATGTGCTACAGACATCACAGAGGGAGACCTGGTTGAGGTGGTCCTGTCAGCCTCTGCCACAGTGGAGGACTTCCAGATCCGTCCCCATGGCTTGTTTGTCCACTCCTACCGGTCCCCTGCCTTCTGTGACCACTGTGGAGAGATGCTGTGGGGCCTAGTGAGACAGGGTCTCAAGTGTGAAGGTTGTGGTCTGAACTATCACAAGCGCTGTGCCTTTAAAATCCCAAATAACTGCAGTGGTATCCGCAAGCGGAGGTTGTCCAATGTCTCTCTGACCGGTTTGACCACACTGACCACCACACGGTCTAATGAACCTTCGCCTTTCACCTCCGACGAGGCCTTACTGTCTCCTGTCAGTCCCGGCATGGAGCAGAAGACACAGACAGACTTCTTTTCTGGCAGAGAGAGAAGGTCCTCTTCCTACATCGGCCGGCCTATAGAGTTAGACAAAATCCTCCTGTCCAAAGTTAAGGTGCCTCACACCCTTGTCATCCACTCCTACACACGCCCCACCGTCTGCCAGCACTGCAAGAAGCTACTCAAGGGCCTGTTCCGTCAAGGCCTGCAATGCAAAGATTGCAAATTCAACTGTCATAAACGATGTGCGCCCAAAGTGCCAAACAACTGCCTTGGAGAAGTGTCTAAAACTGAAGatcTGCTGAGCTCAGGGGCGGAGTCTGATGTGGGGATGGGGGAGGGTTGTGACGACCACGACAGTGACATGAACAGTGGTCTGATGGATGACATGGAGGAGGCCATAGTGCCTGACTCGGGCCTGCTGGAGGCTGGCCATGGGGAAATGGGAGACCTCCATGACCCAGAGGATGACTGCAACAGGGCTATAAgCCCATCTACTAGCAACAACATCCCACTTATGCGAGTGGTCCAGTCAGTCAAAAACACCAAGAGGAAAAGTAGCAATATCATGAAGGAAGGTTGGCTAGTGCACTTCAGCAGCAAAGACACTCTGAGGAAAAGACACTACTGGAGGCTGGACAGCAAATGCATCACCCTTTTCCAGAATGACACAGGCAGCAAATACTACAAGGAAATTCCATTGTCAGAGGTGTTGTCTCTGGACCCAGCGAAGACCTTCAACCTACTGTCTGAGGGCTCCAACGCCCACTGCTTTGAGATCGCCACGGGCAGCCTGGTCTACTATGTAGGGGAGAACCTGGCGAGGCCGGAGGGCCCGGGGAGCATGTCGGCCCACAGCAGTATGCTGGTCAGCGGGGTCGGGCCGGATGTGGCCAGGATGTGGGAGATGGCCATCCAGCATGCCCTCATGCCCGCCATCTCTAAAGGACTGTCACACGGGTCACGTCACAGTGGCCACAAGGATGTTTCCATCAGTATTTCAGTGTCCAACTGCCAGATTCAAGAGAATGTGGATATCAGCTCAGTGTATCAGATATTCCCAGATGAAGTCCTTGGATCGGGCCAATTTGGGATTGTTTATGGAGGAAAGCACCGAAAAACTGGCCGGGATGTAGCAATTAAGATCATTGACAAGTTACGCTTCCCCACCAAGCAGGAGAGCCAGCTACGCAATGAGGTCGCCATCCTTCAGAACCTGCACCACCCTGGGGTAGTGAACCTGGAGTGCATGTTTGAGACTCCGGAGCGCGTCTTCGTTGTCATGGAGAAACTCCACGGAGACATGCTGGAGATGATCCTGTCCAGTGAGAAGGGGAGGCTGCCTGAACGCATCACCAAGTTCTTCGTCTCACAGATTCTTCAGGCTCTTCGTCATCTCCACTTCAAGAATATCGTCCACTGTGACCTCAAACCAGAAAACGTCTTACTGGCGTCCGCAGATGCTTTTCCACAAGTGAAGTTGTGCGACTTTGGCTTTGCCCGCATTATTGGAGAGAAGTCTTTCCGTCGGTCAGTGGTGGGCACTCCGGCCTACCTGGCCCCTGAGGTCCTGAGGAATAAAGGCTACAACCGCTCCCTGGACATGTGGTCTGTGGGGGTCATCATCTACGTCAGCCTCAGCGGCACCTTCCCCTTCAACGAGGACGAGGACATTCACGACCAGATCCAGAATGCTGCCTTCATGTACCCACCCAACCCCTGGAAGAAGGTGTCCCAGGAAGCAATTGACCTCATTAATAACTTGCTGCAAGTCAAGATGAGGAAGCGCTACAGCGTGGACAAGTCGCTCAGCCATGCCTGGCTACAGGACTACCAAATGTGGCTGGACCTACGTGGCCTAGAATGGAAGATGCACGAGCGCTACGTCACGCATGAGAGCGATGACACCCGCTGGGAACGCCACGCTGAGCAGCACGGCCTGACGTACCCCGCCCACCTCGTCAACCCACACGCCGACGTTAGCGAGGGGGTGGAGCCTGACCACGAGTCGGAGGAGGTGGACTCCATGGCGGCCCTCAGCGACAGAgtcagcgtgatgtgaatactgTAAATGCAGGGATACTGTCCCCTTAAGAGTCAACGTGCTGTAGTACTGAACACTGCTGCCTCTGCCCCCTTAAGAGCCGTCTCACTCCCTCCACAACACAActaactgagtgactgactgagccCTCCATTCCCAGCCAGCAGCTAGGGGCTCGATATCCAAACTCTGCCTTTAAACTAACTTTCTAACTAACAAATAATCAAATTTCTAATTGTCTGTATATGAGTCAATCAGGTGTATTGCCTCCCTGCCTCATGAAAGACAATCTAACGTCTTATACTGTATAACTCTGGGTGTGAAGGATCATCCAGGTGTACTGTATGTTAAGTCAACAGCagcaaacaaccccccccccccaaaaaagccaGCTAAACGATTTAGTCAAAACCAAAATTAGATGTGTTTCACTGTGATTGGGTACGACCCAACGAGACAGCTCAGGACTAACCTTAGCGGTATTAAGAGTGAGAACTGATACTATTATTACTCAAGTTTTATTTCACTCTTGAATGTACCTTTATATGATGACATGATAAGAATTCACAGAAAACCAGTATAGCCAGAAATGGTggaaagacaaagacagagagggagatagagagcggACTCGGCTTCAAGAGTGTGGAGGCAAAATCCTGAGGCCTGGATACAGAGAAACAGTGAATGTAGAATACCTGTAAGCATTTGTTCTCATCATGAGCTAGCTGCTTTTCTAGTCTATAGTGTTGAAATGTGTTCATGATGTGATGCTGAATGTTGCGTATGTggctactgtacagtatgtttgtgCTCTTTGCGCGATTGCAACCAGCCTTTAATGCATTTTTGCCTACAGGGAATACATTATTTTCTCTGGCTacacatttaaataaatatatttcaaaGCTGATATGTAAGTCTTTAATACCATGGATTTATTACATGATTTGTGAGTTTGCTTTACACATACACCCCAATGCCTCGTGCCTT

Function

NR:

description
PREDICTED: serine/threonine-protein kinase D1-like isoform X1

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962945.1 True 4013 mRNA 0.50 19 29716602 29766891

Neighbor

gene id symbol gene type direction distance location
LOC110505761 ankrd9 coding downstream 336063 29378279 ~ 29380539 (-)
znf839 znf839 coding downstream 376681 29334672 ~ 29339921 (-)
si:ch211-266o15.1 LOC106611192 coding downstream 395594 29290704 ~ 29321008 (-)
ptp4a2a LOC106611191 coding downstream 445722 29267052 ~ 29270880 (-)
LOC110505749 NA coding downstream 449727 29220723 ~ 29266875 (-)
LOC118944366 NA coding upstream 71383 29838274 ~ 29857889 (-)
LOC110505769 LOC106611207 coding upstream 151390 29918281 ~ 29937851 (-)
LOC110505770 LOC100380626 coding upstream 175228 29942119 ~ 29979525 (-)
LOC110504221 NA coding upstream 226866 29993757 ~ 29996679 (-)
LOC110505778 LOC106611226 coding upstream 1090159 30857050 ~ 30872023 (-)
G1971583 NA non-coding downstream 43799 29672124 ~ 29672803 (-)
G1971540 LOC106579309 non-coding downstream 69576 29646767 ~ 29647026 (-)
G1971496 NA non-coding downstream 100810 29615569 ~ 29615792 (-)
G1971494 NA non-coding downstream 101146 29615051 ~ 29615456 (-)
G1971473 NA non-coding downstream 116544 29599841 ~ 29600058 (-)
G1971747 NA non-coding upstream 31275 29798166 ~ 29828725 (-)
G1971812 LOC106611206 non-coding upstream 129849 29896740 ~ 29906400 (-)
G1972448 NA non-coding upstream 172409 29939300 ~ 29939549 (-)
G1972450 NA non-coding upstream 174333 29941224 ~ 29941514 (-)
G1972491 LOC106611209 non-coding upstream 308628 30075519 ~ 30077670 (-)
G1971357 LOC106611199 other downstream 191556 29522760 ~ 29525046 (-)
G1970606 NA other downstream 854615 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1572840 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1615166 28099921 ~ 28101436 (-)
LOC110505716 LOC106024658 other downstream 2951231 26716542 ~ 26765410 (-)
G1972454 NA other upstream 215393 29982284 ~ 29982900 (-)
G1972746 npas3 other upstream 740660 30507551 ~ 30508058 (-)
G1972810 NA other upstream 849697 30616588 ~ 30683403 (-)
G1972851 NA other upstream 998065 30764956 ~ 30765933 (-)
G1973793 NA other upstream 1817649 31584540 ~ 31585046 (-)

Expression


Co-expression Network