LOC110505769 (LOC106611207)


Basic Information

Item Value
gene id LOC110505769
gene name LOC106611207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29918281 ~ 29937851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585198.2
GGCCAATTCTTCCTCACCCCCGCAGTAAGTAGAATAGACTCTCATATCCAAGGATCGGACTAATGGCGGTCGTCAAATCAGTACACTGAGAGCAAGTTCAAAACATAGCCCTGTCTCACTACAGTCGCCGAGGAATTTCAGGGAAAGGCATCGTCAAATCCATACGGGAATACTGAACtgaaagggggaggggggcgAAATCAAGCAGCAAATTGTGCTGGGACTTTCCTCTTCTTAAAAATGGATGAACACCCCGGCGGAGGAGGAGTTGGAATGGCCGCCCCAAGACCTCAGCAACAACCGCAGGGGAATAACAACGCTAATCCCCAAATCGGTGGTGGAGGTGGCTCAGGGATGGGGCAGCAGCATGACGAGATGCCACGGCCACAGCAGTATACCATCCCCGGTATTCTGCATTATATCCAGCACGAATGGGCCAGATTCGAAATGGAGAGAGCTCATTGGGAAGTGGAAAGGGCCGAACTTCAGGCTCGAATAGCATTCCTACAAGGAGAAAGGAAGGGTCAAGAAAATTTAAAGAATGATCTAGTTCGAAGAATAAAGATGTTAGAATATGCATTAAAGCAAGAAAGAGCAAAATACCATAAATTAAAATATGGAACAGAATTAAATCAAGGTGAAGTTAAGATGCCCAGCTTTGAATCAGAAGATACCAAAGACACAGAGGTCCCTGCTGTACCTCAGAATAGTCAGCTGACGTGGAAACAGGGCAGACAACTCCTCAGACAATATCTTCAGGAAGTAGGTTACACGGACACAATACTAGATGTGCGGTCTCAGAGAGTGCGTTCGTTACTGGGCCTGTCCGGCTCAGAGCAGAATGGCTCAGTGGAAAACAGGAACCTGGATCAGATCCTCAATGGAGGGGAGTCTCCAGCCAAACGAAAGGGACAAGATATgaaaagGAATCCAGGAGATGTTCTGGAAACATTTAACTTCTTAGAAAACGCAGAGGAcagtgatgaagatgatgatgaggagggagACCTGATGGAGGATATAGACAGTGGCAAACACACAATAAAAAAGCATAAGATAAAGGTTGGGAACGAGGGCCTGGCCTCTGACCTTCCAGATGACCCCGACACAGAGGAGGCTCTGAAGGAGTTTGACTTCCTGGTGAATTCCgaggatggagagggagcaggggaggcCCGGAGTTCAGGGGACGGGACCGAATGGGCCGAGCCCTTACCGTTTCCCTCAGGCGGGGGCAAGTCCTTTATCATGGGCTCTGATGACGTGTTGGAGAGTGTCCTGGGACTGGGAGACCTAGCTGACCTCACTGTCTCCAATGACGACGCCGACTACAGCTATGACCTGCCAGCCAATAAGGACACGTTCAGGAAGACGTGGAATCCCAAGTACACCCTGCGCAGCCACTTTGACGGGGTCAGGGCTCTGGCCTTCCATCCTGTAGAGCCTGTCCTGGTCACCGTGTCTGAGGACAACACCCTCAAACTGTGGAACCTGCAGAAGACTGTGCCTGCCAAAAAAAGTGCCTCTTTTGATGTGGAGCCTATTTACACGTTCAGAGCTCATGTGGGGCCTGTGCTGTCCCTGGCTATGACTTCCAGTGGAGAGCAGTGTTACAGTGGAGGGATTGACCACACAATACAGTGCTGGAACATCCCCAGCTCCAACGTGGACCCTTATGACACCTACGaccccagtgtcctggctggaacctggctgggccacacagacGCTGTGTGGGGGCTGGCCTACAGCGGGATCAAGAACCGCCTGCTGTCCTGCTCTGCAGATGGAACCGTCAAGCTGTGGAACCCCCAGGAGAAGAACCCATGCATCAGCACTTACAATGCAGAGAAAGAGCACGGCATCCCCACTGCGGTGGACTTCAACGGCTGTGACCCCGCCCACATGGTGGCGTCCTTCAACACGGGCAACGCTGTGATCTATGACCTGGAGACGTCACAGACCGCTGTGGTGTTCGCTGGTCAGGGGGAGAGCACTCTGCCTGCAGCCAACCACATCAACAAGGTAGTGAGTCACCCCACCCTGCCGGTCACCATCACGGCCCACGAGGACAGGAACATCAAGTTCTTTGACAATAAATCGGGTAAAGTGATCCATGCGATGGTGGCCCACCTGGATGCTGTTACCAGCCTGGCTGTGGACCCCAACGGGATCTACCTGATGTCAGGAAGCCACGACTGCTCTATCCGTCTGTGGAACCTGGACAGTAAGACCTGTGTGCAGGAGATCACTGCCCACCGCAAGAAGTCTGACGAGTCCATCTATGACGTTGCCTTCCACCCATCAAAGGCATACATAGCAAGTGCCGGGGCCGACGCCCTGGCCAAAGTGTTTGTGTAGTAGACCTGTGCTGCTCTGCCAGGTTGAGTGGGTAGACACCGAGAGAAAGAATGGACTGCTTCACTGCCTTGTTTAATAAGAGTAGCATTTTATGACACTACATTGAAGCTGCCTCCCTCCACCCCATCCATGTTGAACTCAACACTTGACAGAAACCAGGTGCCAAGGGGACTTATGCCAGGCGTGGTGGTGGAGAAGCGCCCAATCAGTTTTATCCTGTTTTCAaactaaaacaacaacatttaccTGTAATTTACTGTAAGTCTAAAAAGCTGGAGTAAAACAAACTAGTGTATGTAGCCTTTTTGACTGGGTTTCAGCTGAGCTAATATCTGTTCTGTCGGTGTAGTTCAGTGGCCGAGGGACAATTGAGATTTCACCTGATTCATACTACAGGGCTGACCCCTCACCATACAGGGCTGACCCCTCACCATACAGGGCTGGCTCTGATATTTTATTTTCATCACGGTTTCAGTAACTATGGTGGATTTGTAACCAGTTCAGCTCGGTTTTGTTTGGCTTgctagtgtgaaaagggtatttAACAGGACATGGCCACAGCCCCTGGTGGGCCGACTGGGAGACCCTGCGGCGTCAGTTCAGTTCACACTAAACATGAATCAGGCGTGAAATATAGTCAGTCAACTTCACACTTTAGCATTAGTTTCATGACATttttgtgtaaaaaaatatagtttttataATCCTTTTTATATAAATAAAGTCTGTCGTAACAGCACTGAAAATTATGTATAAAAAAAAGGGAATATTTATTCCCGGTCTGAACCCTCCTTCACAACTCATTATGTCCCCCACAACCATCATCTTACGGTTCCCCCGTCACTGAAAACACTCAGTGATCTCGCCCTTCCTAACCCAAGGATGTGATCTCTGACATTGCTTTTACTGGCTTTGTCACATGAGTAAAGACTGTAGGACAAAGAAGCACAGTTCATGGCTTCCTGAGAGAGCGCTCTTTTCAAATAAACTGCATCATCCTATCACTATGTGATATTTTGTACACCTTACTGTATTTGAGTTTATTTATCGCAGGTTATTAGACATCTTTATGCTATAAATCAGTGCTTTGAAGCAAGCATGGGGTGTAACCATTTTATTTTTCTTAATTTTGTTTTAAGTGATTGGAATAGCAAACATAAGATTAATCACGACTCAGTCTTTTGTTTGATTGTACTTTTCTATTTTATCCTGCAAAACTATTTTATGTTCAAACATGCTACAATTTCTGGTGTAACTAAATGCTTTTGTTTGTGTAATGCATGATAAATACAATAGTCTTTTTTCTAGTCTTCCAAAAAAAGGTTCTGGTCAGTTTGCGAGTTTTGATGAGTTTTGTAAGGTTTTTGATTTACAAACTATGAATCAGCAGATTTTAAAGATTGTACCACATAGCAAAATGAAACTGTTGAAAAATAATGTATATAAAATGTCTATAATAAATATTAAATGGTGTACCTGTA

Function

NR:

description
striatin-3-like

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585198.2 True 3842 mRNA 0.47 16 29918281 29937851

Neighbor

gene id symbol gene type direction distance location
LOC118944366 NA coding downstream 60392 29838274 ~ 29857889 (-)
LOC110505765 LOC106611200 coding downstream 151390 29716602 ~ 29766891 (-)
LOC110505761 ankrd9 coding downstream 537742 29378279 ~ 29380539 (-)
znf839 znf839 coding downstream 578360 29334672 ~ 29339921 (-)
si:ch211-266o15.1 LOC106611192 coding downstream 597273 29290704 ~ 29321008 (-)
LOC110505770 LOC100380626 coding upstream 4268 29942119 ~ 29979525 (-)
LOC110504221 NA coding upstream 55906 29993757 ~ 29996679 (-)
LOC110505778 LOC106611226 coding upstream 919199 30857050 ~ 30872023 (-)
sptssa NA coding upstream 937543 30875080 ~ 30880165 (-)
LOC110505780 eapp coding upstream 942783 30880634 ~ 30891858 (-)
G1971812 LOC106611206 non-coding downstream 11881 29896740 ~ 29906400 (-)
G1971747 NA non-coding downstream 89556 29798166 ~ 29828725 (-)
G1971583 NA non-coding downstream 245478 29672124 ~ 29672803 (-)
G1971540 LOC106579309 non-coding downstream 271255 29646767 ~ 29647026 (-)
G1971496 NA non-coding downstream 302489 29615569 ~ 29615792 (-)
G1972448 NA non-coding upstream 1449 29939300 ~ 29939549 (-)
G1972450 NA non-coding upstream 3373 29941224 ~ 29941514 (-)
G1972491 LOC106611209 non-coding upstream 137668 30075519 ~ 30077670 (-)
G1972520 LOC106562530 non-coding upstream 186837 30124688 ~ 30129288 (-)
G1972552 NA non-coding upstream 232168 30170019 ~ 30170241 (-)
G1971357 LOC106611199 other downstream 393235 29522760 ~ 29525046 (-)
G1970606 NA other downstream 1056294 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1774519 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1816845 28099921 ~ 28101436 (-)
LOC110505716 LOC106024658 other downstream 3152910 26716542 ~ 26765410 (-)
G1972454 NA other upstream 44433 29982284 ~ 29982900 (-)
G1972746 npas3 other upstream 569700 30507551 ~ 30508058 (-)
G1972810 NA other upstream 678737 30616588 ~ 30683403 (-)
G1972851 NA other upstream 827105 30764956 ~ 30765933 (-)
G1973793 NA other upstream 1646689 31584540 ~ 31585046 (-)

Expression


Co-expression Network