Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110505772 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 29940079 ~ 29941170 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: AP-4 complex subunit sigma-1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002470865.2 | True | 894 | mRNA | 0.38 | 2 | 29940079 | 29941170 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505767 | LOC106611206 | coding | upstream | 33679 | 29888717 ~ 29906400 (+) |
| LOC110505766 | LOC106611201 | coding | upstream | 53720 | 29859648 ~ 29886359 (+) |
| LOC110505764 | LOC106611199 | coding | upstream | 415003 | 29522690 ~ 29525076 (+) |
| LOC110505763 | ehd4 | coding | upstream | 488457 | 29408807 ~ 29451622 (+) |
| LOC110505762 | traf3 | coding | upstream | 534472 | 29392556 ~ 29405607 (+) |
| LOC110505773 | LOC106611209 | coding | downstream | 66191 | 30007361 ~ 30077294 (+) |
| LOC110505775 | LOC106611224 | coding | downstream | 151285 | 30092455 ~ 30330735 (+) |
| LOC110505776 | LOC106611225 | coding | downstream | 395365 | 30336535 ~ 30846679 (+) |
| LOC110505785 | LOC106611232 | coding | downstream | 1051129 | 30992299 ~ 31000393 (+) |
| LOC110505784 | LOC106611231 | coding | downstream | 1059346 | 31000516 ~ 31040820 (+) |
| G1971840 | NA | non-coding | upstream | 431 | 29939360 ~ 29939648 (+) |
| G1971652 | NA | non-coding | upstream | 93659 | 29808077 ~ 29846420 (+) |
| G1971628 | NA | non-coding | upstream | 159645 | 29766363 ~ 29780434 (+) |
| G1971541 | NA | non-coding | upstream | 292637 | 29647138 ~ 29647442 (+) |
| G1971538 | NA | non-coding | upstream | 293950 | 29645817 ~ 29646129 (+) |
| G1971833 | NA | non-coding | downstream | 973 | 29942143 ~ 29943150 (+) |
| G1971831 | LOC100380626 | non-coding | downstream | 6422 | 29947592 ~ 29948425 (+) |
| G1971879 | NA | non-coding | downstream | 54802 | 29995972 ~ 29996919 (+) |
| G1971889 | NA | non-coding | downstream | 88108 | 30029278 ~ 30031807 (+) |
| G1971858 | NA | non-coding | downstream | 136949 | 30078119 ~ 30078514 (+) |
| G1971104 | NA | other | upstream | 461696 | 29474120 ~ 29478383 (+) |
| G1970001 | NA | other | upstream | 1526160 | 28413600 ~ 28413919 (+) |
| LOC110505721 | ccdc88c | other | upstream | 2851763 | 26988390 ~ 27099710 (+) |
| G1967965 | NA | other | upstream | 3284743 | 26654905 ~ 26655336 (+) |
| G1967032 | NA | other | upstream | 4106758 | 25831576 ~ 25833321 (+) |
| G1972242 | NA | other | downstream | 689158 | 30630328 ~ 30632667 (+) |
| G1972244 | NA | other | downstream | 695884 | 30637054 ~ 30655039 (+) |
| G1972245 | NA | other | downstream | 718234 | 30659404 ~ 30679995 (+) |
| G1972252 | NA | other | downstream | 754063 | 30695233 ~ 30696314 (+) |
