LOC110504221


Basic Information

Item Value
gene id LOC110504221
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29993757 ~ 29996679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110504221
ATGGGGGATAAGGAGAAtGTGACTGAAAAGGCAGGTTCTCCACAAGCAAGATCTGTTCTTCAGCAGTGTCTCTATGCAATGCTTCAAGTCAAACTTGCAGATGATCAAtctgatgctgaatgggtggagATTGACAGAGGGATGGTATATATCTGTTTTTTCAAATGTGCTACAGAGGACATTATCCCCAAAATGGTAAATTGGTTATTAATCACTTTGCTATACTATAATCTACAGCGAACACTGTGTGAGGCTGACTCTGGGAAGTATGTGTCAGTGCTGGACTTACCTGGGAGCGTTCTCATCGTGCCTCAGGCTACACTCTCCCAAGGCCAAAGGGAAGGGCATGCAGTACCACAATAACATTGGGAAAGAAGAGGGCCTGCAGCTGTATTCTAACTTTGTCTCCTTCTTTGAGAAGGAACTTGCTTTGTCCAGTAAGAGTAGTGAGATTGCAACCATCATCAAACATGGTGCAGCTGAATACCAACGGACCATGCACACACATGATGGAGTTTTGA

Function

NR:

description
PREDICTED: probable D-tyrosyl-tRNA(Tyr) deacylase 2

GO:

id name namespace
GO:0019478 D-amino acid catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110504221 True 521 mRNA 0.44 5 29993757 29996679

Neighbor

gene id symbol gene type direction distance location
LOC110505770 LOC100380626 coding downstream 14232 29942119 ~ 29979525 (-)
LOC110505769 LOC106611207 coding downstream 55906 29918281 ~ 29937851 (-)
LOC118944366 NA coding downstream 135868 29838274 ~ 29857889 (-)
LOC110505765 LOC106611200 coding downstream 226866 29716602 ~ 29766891 (-)
LOC110505761 ankrd9 coding downstream 613218 29378279 ~ 29380539 (-)
LOC110505778 LOC106611226 coding upstream 860371 30857050 ~ 30872023 (-)
sptssa NA coding upstream 878715 30875080 ~ 30880165 (-)
LOC110505780 eapp coding upstream 883955 30880634 ~ 30891858 (-)
LOC110505779 snx6 coding upstream 895311 30891990 ~ 30899754 (-)
LOC110505781 cf12 coding upstream 912296 30908975 ~ 30912793 (-)
G1972450 NA non-coding downstream 52243 29941224 ~ 29941514 (-)
G1972448 NA non-coding downstream 54208 29939300 ~ 29939549 (-)
G1971812 LOC106611206 non-coding downstream 87357 29896740 ~ 29906400 (-)
G1971747 NA non-coding downstream 165032 29798166 ~ 29828725 (-)
G1971583 NA non-coding downstream 320954 29672124 ~ 29672803 (-)
G1972491 LOC106611209 non-coding upstream 78840 30075519 ~ 30077670 (-)
G1972520 LOC106562530 non-coding upstream 128009 30124688 ~ 30129288 (-)
G1972552 NA non-coding upstream 173340 30170019 ~ 30170241 (-)
G1972554 NA non-coding upstream 174554 30171233 ~ 30174260 (-)
G1972553 NA non-coding upstream 175798 30172477 ~ 30177859 (-)
G1972454 NA other downstream 10857 29982284 ~ 29982900 (-)
G1971357 LOC106611199 other downstream 468711 29522760 ~ 29525046 (-)
G1970606 NA other downstream 1131770 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1849995 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1892321 28099921 ~ 28101436 (-)
G1972746 npas3 other upstream 510872 30507551 ~ 30508058 (-)
G1972810 NA other upstream 619909 30616588 ~ 30683403 (-)
G1972851 NA other upstream 768277 30764956 ~ 30765933 (-)
G1973793 NA other upstream 1587861 31584540 ~ 31585046 (-)
G1973835 LOC106611243 other upstream 1617742 31614421 ~ 31618499 (-)

Expression


Co-expression Network