LOC110505785 (LOC106611232)


Basic Information

Item Value
gene id LOC110505785
gene name LOC106611232
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30992299 ~ 31000393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585221.2
AATACAGGGGCTGCAAAGAAGTAAACATAACCCCGGAACTAGATAGGCATTCTGGGATATCTGGTATTGAGATGACGTTCGTTTGGTTGCTTTTCTCAAGCCAGTTGGCAAACTTTAGTTAAGGAAGTCAACAACGGACGTTTGATCACCAATAAGTGTCAGTGAAAGGTGTGGAGACAAGGGGGTTCCCTCAACATTGAAGCCGAAGAGGCCTTATTTCTCAACTGATTTTGTTCAACAAGACCTGCCAACATGGTGTTAGCCGATTTGGGAAGAAAAATAACCTCGGCATTGCGATCACTGAGCAATGCCACCATCATCAATGAGGAGGTATTAAATGCCATGCTGAAAGAAGTGTGTGCTGCCCTCCTGGAAGCTGATGTCAACATCAAGTTGGTAAAGCAGCTCAGAGAAAATGTAAAATCATCCATTGACCTGGAGGAGATGGCCTCTGGGCTGAACAAGAGGAGAATGATCCAGCATTCTGTGTTCAAGGAGCTTGTCAAGCTGGTGGATCCAGGGGTCAAGGCTTGGACACCCACAAAGGGAAAGAACAATGTCATCATGTTTGTGGGTCTTCAGGGCAGTGGGAAAACCACAACCTGTTCCAAGCTGGCGTACTACTACCAAAGAAAAGGGTGGAAAACCTGTTTGATTTGCGCTGACACTTTCAGAGCTGgtgcctTCGATCAGTTGAAGCAAAATGCAACAAAAGCCAGAATTCCATTCTATGGAAGTTACACAGAGATGGACCCTGTCGTCATAGCTGCGGAAGGTGTGGAAAAGTTCAAAAATGAGAGCTTTGAAATAATCATTGTTGATACCAGTGGCCGACACAAGCAAGAAGATTCCCTTTTTGAGGAGATGTTGCAGGTTTCCAATGCAGTGCAACCTGACAACATTGTGTACGTAATGGATGCCTCCATTGGCCAAGCTTGTGAAGCCCAGGCGAAGGCCTTCAAAGACAAAGTAGAAGTTGCGTCCGTCATAGTGACAAAGCTGGATGGTCATGCCAAAGGTGGTGGTGCTCTCAGTGCAGTGGCTGCTACTAAGAGTCCCATCATTTTCATTGGTACTGGAGAACACATTGATGACTTAGAGCCATTTAAGACACAACCCTTCATCAGCAAGCTACTGGGCATGGGAGACATTGAAGGTTTGATAGACAAAGTCAATGAACTCAAGCTGGATGACAACGAGGAGTTAATTGACAAGCTGAAACATGGTCAGTTCACTCTTCGTGACATGTACGAGCAGTTTCAAAACATCATGAAGATGGGACCTTTCGGACAGATCATGGGTATGATCCCAGGTTTCGGAACAGACTTCATGAGCAAAGGCAACGAGCAGGAGTCCATGGCTAGGTTGAAGAAACTCATGACAATTATGGACAGCATGAACGACCAAGAACTTGACAACAAAGACGGTGCAAAGCTCTTCAGCAAGGGGCCGAACCGAATCGCCAGAGTGGCACGCGGTTCAGGGGTTGCCACCAGGGACGTCCAGGAGCTGCTCACCCAGTACACCAAGTTTGCCCAGATGGTGAAGAAGATGGGTGGCATCAAGGGCCTGTTCAAAGGTGGTGATATGTCCAAGAATGTCAACCCCTCTCAGATGGCTAAGTTGAACCAACAGATGGCAAAGATGATGGACCCAAGGGTTCTCCACCATATGGGTGGAATGTCTGGTCTCCAGTCCATGATGAGACAGTTCCAACAGGGTGCAGCTGGCAACGCGAAAGGAATGATGGGATTCAACAATATGTGAACCACTGAGCCTTAACCCGGTTAAATAAAAGGTTGTCATTTGGATTTAGCAAGAAGGAGATGCAAGTTATTTTGCCTCTAATATAATTAATTACAATGTTTGTGTATAAAATTATGCAGAGGCTTATTTACTTATCAGGATAAATCAAAAGAAGTTCTGTGATTTTTACACTAATTGTAAAATAGGCACAAAAGATGCATAAATGATGGGATTATGAAGCTTGTCCTCAGttatgttcattaggcaccaaacagaagaaaatagaCTTCAATCCGGAGTCACTattggacttgtccaataagataCCCTAATTTGTGTTTTTAATTGCAAAACAACTTAAAATGTTTTCCGGTGTACCCTAATGAACCCAACCAAGATTTGGAGATGTTGTAAAGGATATGCTGAAATTAGTtggacattttttgttgttgtcataatGTAATAAAATTTGTATTGCAATGTTTTAAAAA
>XM_036963008.1
CAAAGAAGTAAACATAACCCCGGAACTAGATAGGCATTCTGGGATATCTGGTATTGAGATGACGTTCGTTTGGTTGCTTTTCTCAAGCCAGTTGGCAAACTTTAGTTAAGGAAGTCAACAACGGACGTTTGATCACCAATAAGTGTCAGTGAAAGGTTCAACAAGACCTGCCAACATGGTGTTAGCCGATTTGGGAAGAAAAATAACCTCGGCATTGCGATCACTGAGCAATGCCACCATCATCAATGAGGAGGTATTAAATGCCATGCTGAAAGAAGTGTGTGCTGCCCTCCTGGAAGCTGATGTCAACATCAAGTTGGTAAAGCAGCTCAGAGAAAATGTAAAATCATCCATTGACCTGGAGGAGATGGCCTCTGGGCTGAACAAGAGGAGAATGATCCAGCATTCTGTGTTCAAGGAGCTTGTCAAGCTGGTGGATCCAGGGGTCAAGGCTTGGACACCCACAAAGGGAAAGAACAATGTCATCATGTTTGTGGGTCTTCAGGGCAGTGGGAAAACCACAACCTGTTCCAAGCTGGCGTACTACTACCAAAGAAAAGGGTGGAAAACCTGTTTGATTTGCGCTGACACTTTCAGAGCTGgtgcctTCGATCAGTTGAAGCAAAATGCAACAAAAGCCAGAATTCCATTCTATGGAAGTTACACAGAGATGGACCCTGTCGTCATAGCTGCGGAAGGTGTGGAAAAGTTCAAAAATGAGAGCTTTGAAATAATCATTGTTGATACCAGTGGCCGACACAAGCAAGAAGATTCCCTTTTTGAGGAGATGTTGCAGGTTTCCAATGCAGTGCAACCTGACAACATTGTGTACGTAATGGATGCCTCCATTGGCCAAGCTTGTGAAGCCCAGGCGAAGGCCTTCAAAGACAAAGTAGAAGTTGCGTCCGTCATAGTGACAAAGCTGGATGGTCATGCCAAAGGTGGTGGTGCTCTCAGTGCAGTGGCTGCTACTAAGAGTCCCATCATTTTCATTGGTACTGGAGAACACATTGATGACTTAGAGCCATTTAAGACACAACCCTTCATCAGCAAGCTACTGGGCATGGGAGACATTGAAGGTTTGATAGACAAAGTCAATGAACTCAAGCTGGATGACAACGAGGAGTTAATTGACAAGCTGAAACATGGTCAGTTCACTCTTCGTGACATGTACGAGCAGTTTCAAAACATCATGAAGATGGGACCTTTCGGACAGATCATGGGTATGATCCCAGGTTTCGGAACAGACTTCATGAGCAAAGGCAACGAGCAGGAGTCCATGGCTAGGTTGAAGAAACTCATGACAATTATGGACAGCATGAACGACCAAGAACTTGACAACAAAGACGGTGCAAAGCTCTTCAGCAAGGGGCCGAACCGAATCGCCAGAGTGGCACGCGGTTCAGGGGTTGCCACCAGGGACGTCCAGGAGCTGCTCACCCAGTACACCAAGTTTGCCCAGATGGTGAAGAAGATGGGTGGCATCAAGGGCCTGTTCAAAGGTGGTGATATGTCCAAGAATGTCAACCCCTCTCAGATGGCTAAGTTGAACCAACAGATGGCAAAGATGATGGACCCAAGGGTTCTCCACCATATGGGTGGAATGTCTGGTCTCCAGTCCATGATGAGACAGTTCCAACAGGGTGCAGCTGGCAACGCGAAAGGAATGATGGGATTCAACAATATGTGAACCACTGAGCCTTAACCCGGTTAAATAAAAGGTTGTCATTTGGATTTAGCAAGAAGGAGATGCAAGTTATTTTGCCTCTAATATAATTAATTACAATGTTTGTGTATAAAATTATGCAGAGGCTTATTTACTTATCAGGATAAATCAAAAGAAGTTCTGTGATTTTTACACTAATTGTAAAATAGGCACAAAAGATGCATAAATGATGGGATTATGAAGCTTGTCCTCAGttatgttcattaggcaccaaacagaagaaaatagaCTTCAATCCGGAGTCACTattggacttgtccaataagataCCCTAATTTGTGTTTTTAATTGCAAAACAACTTAAAATGTTTTCCGGTGTACCCTAATGAACCCAACCAAGATTTGGAGATGTTGTAAAGGATATGCTGAAATTAGTtggacattttttgttgttgtcataatGTAATAAAATTTGTATTGCAATGTTTTAAAAA

Function

NR:

description
PREDICTED: signal recognition particle 54 kDa protein-like

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048500 signal recognition particle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03106 SRP54, ffh; signal recognition particle subunit SRP54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585221.2 False 2237 mRNA 0.44 17 30992299 31000393
XM_036963008.1 True 2160 mRNA 0.44 17 30992312 31000393

Neighbor

gene id symbol gene type direction distance location
LOC110505776 LOC106611225 coding upstream 145620 30336535 ~ 30846679 (+)
LOC110505775 LOC106611224 coding upstream 661564 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 915005 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 1051129 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 1085899 29888717 ~ 29906400 (+)
LOC110505784 LOC106611231 coding downstream 123 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 80286 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 102891 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 214430 31214823 ~ 31220599 (+)
LOC110505790 LOC106611238 coding downstream 221099 31221492 ~ 31271457 (+)
G1972408 LOC106611229 non-coding upstream 19234 30972171 ~ 30973065 (+)
G1972392 LOC106611229 non-coding upstream 76187 30915738 ~ 30916112 (+)
G1972350 NA non-coding upstream 142314 30847889 ~ 30849985 (+)
G1972341 NA non-coding upstream 164385 30827404 ~ 30827914 (+)
G1972339 NA non-coding upstream 166856 30825225 ~ 30825443 (+)
G1972965 NA non-coding downstream 42064 31042457 ~ 31042706 (+)
G1972969 NA non-coding downstream 43498 31043891 ~ 31044178 (+)
G1972970 NA non-coding downstream 43976 31044369 ~ 31044625 (+)
G1972985 NA non-coding downstream 55120 31055513 ~ 31055926 (+)
G1973107 NA non-coding downstream 148974 31149367 ~ 31149567 (+)
G1972252 NA other upstream 295985 30695233 ~ 30696314 (+)
G1972245 NA other upstream 312304 30659404 ~ 30679995 (+)
G1972244 NA other upstream 337260 30637054 ~ 30655039 (+)
G1972242 NA other upstream 359632 30630328 ~ 30632667 (+)
G1973126 NA other downstream 157125 31157518 ~ 31157736 (+)
G1973193 NA other downstream 203222 31203615 ~ 31203991 (+)
G1973369 NA other downstream 387085 31387478 ~ 31387736 (+)
G1973635 NA other downstream 718131 31718524 ~ 31718968 (+)
G1973669 NA other downstream 786852 31787245 ~ 31789449 (+)

Expression


Co-expression Network