LOC110505788 (LOC106611236)


Basic Information

Item Value
gene id LOC110505788
gene name LOC106611236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31103284 ~ 31109026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585223.2
TCTCCTGTGTGTTTGGTAGTGGTATTCGAGCGAGCGTTGTCATAGTTTTCCGTTGTTTGTAGctagtgcagtaatacccacaagGAAAGGGTTACGACTCATTTGTGTCCCAAAAATTAGATGCAAGCTTTGAAGTGGGAGCGGTGTGTCCAATCGAAATGAGTAAATTCAATGTGGATTTACCTCACTATATCGCTATtagattagctagctagctgacactCCCTTGCCTAGGCTGGTGAAACGGCCTCCCTCTGAAGGCCTCTTCTTTGGTTCTTCTTTGACTTTGGTAGCTAACTCAGCTGTCAATCACCCTCCTGCAACATCCAGCCAATTACAGCACACCATTTCCTAGGATACATTTTCCCAAAACTTCAATCTGAGGAACTGCATGTTTACGATTTGTGGATTTCTACCATAATGTTGGGAACAGTGAAAATGGAAGGTCACGAAACACCAGATTGGAGCAGCTATTACAACGACGCACAAGAGGTATATTCACCCATGGCAAACAGCGGCATGAATGCAGGACTGGGTTCCATGAATAGTATGAACAGTTACATGAGTATGTCTACCAGTGGAAATATGACCTCCGGTTCTTTCAACATGTCCTACGCGAACCCCGGCCTGGGAGCCGGAATAAGCCCCGGTACAATGGCAGGGATGCCTCCGAGCACGTCCATGAATGGAATGTGCGGCGGGGTATCGTCAATGGGCACTGCCCTTAGCCCCTCGAACATGGGCGCAATGTCGGCTCAGCAGGCTTCCATGAACGCTCTGAATCCATACGCCAGCATGAGCCCTACAATGAGCCAAATGTCCTATAATCAGCCCAACCTGAACCGAGCAAGGGACAACAAGTCGTTCAGGAGAAGCTACCCGCACGCAAAGCCTCCGTATTCATACATATCCCTGATAACCATGGCCATTCAGCAAGCACCAAGCAAGATGCTCACGCTTAGCGAAATCTACCAATGGATAATGGACCTATTTCCATACTACAGACAGAACCAACAGAGGTGGCAGAACTCTATTCGCCATTCCTTGTCTTTTAATGATTGTTTCATCAAAGTGTCTAGATCACCGGATAAACCAGGCAAAGGCTCATACTGGGCCCTGCACCCAGATTCTGGAAATATGTTCGAGAACGGTTGTTATCTCCGCAGACAAAAGCGCTTTAAATGCGAAAATAGAAAGCTATCTTCAAGTAAAGGAGACGGAAGGAAAGACCAGTCTGGTTCTGGGTCACCTTCGAGCGACAACAGCAAGACTGGACATGTGGACCCCAACTCCCTCTCCACCTGCAACCAGTCCTCCAGCCCTCACATAATGGACCGCAGGAGCAGTAGCAGCGCCTCTGAACTAAAGAGCAGCGGGCCACCTCTCCACCCTGTGGCCAGCTCCGTCAcgtccctgtcctctctccctttacctccGCACTCAATGGCGCACGAGTCCCAGCTGCACCTAAAAGGGGATCCCCATTACTCATTCAACCACCCCTTTTCAATAAATAATTTAATGTCATCTTCAGAGCAACAGCACAAACTGGACTTGAAAGCCTACGAGCAAGCTTTGCAATACTCCTCCTACGGCTCAAGTATGTCCTCCAGTCTACCCCTCGGCAGCGCGTCCATGGTAGGCAGAGCCATGGACCCATCCGCAATAGAGGCGTCATACTATCAAGGTGTGTATTCCAGACCGGTCCTCAACACTTCTTAGTATCTTCTCATTTTTATAGTGCTCGACAAAAGGACAAACAGAAAACATTTATCTTATTTTTGCATGCACCTGGTGCATAAGGACTGTTACTTCAATGTATAACAATATGTATGAGTAAAATACAATAGTCCTGTAAAGTGTTTCCAATTGAATGATTGTATATCCAGCTGTAAATCATTGCTAGTGTATTTAAAACAATTTCGAGCTTGTAAAATAATGTTGTATTCCCAAAACTTGTAGTCCCCACAATGAATATGTCCATGTGTTACAATTTGCAtgaatgaaggtcagtcaataaggtCTCGTGGAACGCGTGACGCAGGTGAAGCGCAAAACACCTGTCTGTTACAGATACAGCCTACTTTTTTGAATGGATGTTGTCACTTTACGCATTGCTTTGGTTTCATTTGCTAAATATCTGACAAACATATTTTTTAAGCAATCTTGTAATACAATCTTAAATTCCAAGTGGAAATGAAttataaataaaatgttattctTTATAGGCTACAGCAAAATTCCAGTCTTTTTTGTGGTATTTTTCAAACCAGAAAATGGGTGATTATGTGCAGCTTAATGTCAGCGTTTTGTCTTTCTCTGTTTTTTTGATGTCTCTGCATGTGCTTAACTTATTTCTTGTTCATTTCCAAATAAAACAA

Function

NR:

description
hepatocyte nuclear factor 3-alpha-like

GO: NA

KEGG:

id description
K09387 FOXA1, HNF3A; forkhead box protein A1, hepatocyte nuclear factor 3-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585223.2 True 2381 mRNA 0.45 3 31103284 31109026

Neighbor

gene id symbol gene type direction distance location
LOC118944303 LOC106611235 coding upstream 20743 31080679 ~ 31082541 (+)
LOC110505784 LOC106611231 coding upstream 62464 31000516 ~ 31040820 (+)
LOC110505785 LOC106611232 coding upstream 102891 30992299 ~ 31000393 (+)
LOC110505776 LOC106611225 coding upstream 256605 30336535 ~ 30846679 (+)
LOC110505775 LOC106611224 coding upstream 772549 30092455 ~ 30330735 (+)
LOC110505789 LOC106611239 coding downstream 105797 31214823 ~ 31220599 (+)
LOC110505790 LOC106611238 coding downstream 112466 31221492 ~ 31271457 (+)
LOC110505794 NA coding downstream 165642 31274668 ~ 31282108 (+)
LOC110505791 LOC106611240 coding downstream 178876 31287902 ~ 31290986 (+)
LOC110505795 LOC106611242 coding downstream 337885 31446911 ~ 31459466 (+)
G1972985 NA non-coding upstream 47358 31055513 ~ 31055926 (+)
G1972970 NA non-coding upstream 58659 31044369 ~ 31044625 (+)
G1972969 NA non-coding upstream 59106 31043891 ~ 31044178 (+)
G1972965 NA non-coding upstream 60578 31042457 ~ 31042706 (+)
G1972408 LOC106611229 non-coding upstream 130219 30972171 ~ 30973065 (+)
G1973107 NA non-coding downstream 40341 31149367 ~ 31149567 (+)
G1973118 NA non-coding downstream 44561 31153587 ~ 31153859 (+)
G1973140 NA non-coding downstream 56687 31165713 ~ 31165945 (+)
G1973157 NA non-coding downstream 67854 31176880 ~ 31177158 (+)
G1973160 NA non-coding downstream 69517 31178543 ~ 31178762 (+)
G1972252 NA other upstream 406970 30695233 ~ 30696314 (+)
G1972245 NA other upstream 423289 30659404 ~ 30679995 (+)
G1972244 NA other upstream 448245 30637054 ~ 30655039 (+)
G1972242 NA other upstream 470617 30630328 ~ 30632667 (+)
G1973126 NA other downstream 48492 31157518 ~ 31157736 (+)
G1973193 NA other downstream 94589 31203615 ~ 31203991 (+)
G1973369 NA other downstream 278452 31387478 ~ 31387736 (+)
G1973635 NA other downstream 609498 31718524 ~ 31718968 (+)
G1973669 NA other downstream 678219 31787245 ~ 31789449 (+)

Expression


Co-expression Network