Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110505789 |
| gene name | LOC106611239 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 31214823 ~ 31220599 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: proteasome subunit alpha type-3 |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019773 | proteasome core complex, alpha-subunit complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02727 | PSMA3; 20S proteasome subunit alpha 7 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021585224.2 | False | 1226 | mRNA | 0.44 | 9 | 31214823 | 31220599 |
| XM_021585226.2 | True | 1142 | mRNA | 0.45 | 10 | 31214823 | 31220599 |
31,206,000
31,207,000
31,208,000
31,209,000
31,210,000
31,211,000
31,212,000
31,213,000
31,214,000
31,214,000
31,215,000
31,216,000
31,217,000
31,218,000
31,219,000
31,220,000
31,221,000
31,222,000
NC_048589.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505788 | LOC106611236 | coding | upstream | 105797 | 31103284 ~ 31109026 (+) |
| LOC118944303 | LOC106611235 | coding | upstream | 132282 | 31080679 ~ 31082541 (+) |
| LOC110505784 | LOC106611231 | coding | upstream | 174003 | 31000516 ~ 31040820 (+) |
| LOC110505785 | LOC106611232 | coding | upstream | 214430 | 30992299 ~ 31000393 (+) |
| LOC110505776 | LOC106611225 | coding | upstream | 368144 | 30336535 ~ 30846679 (+) |
| LOC110505790 | LOC106611238 | coding | downstream | 893 | 31221492 ~ 31271457 (+) |
| LOC110505794 | NA | coding | downstream | 54069 | 31274668 ~ 31282108 (+) |
| LOC110505791 | LOC106611240 | coding | downstream | 67303 | 31287902 ~ 31290986 (+) |
| LOC110505795 | LOC106611242 | coding | downstream | 226312 | 31446911 ~ 31459466 (+) |
| LOC110505796 | leg3 | coding | downstream | 355884 | 31576483 ~ 31587632 (+) |
| G1973197 | NA | non-coding | upstream | 6726 | 31207882 ~ 31208097 (+) |
| G1973182 | NA | non-coding | upstream | 22883 | 31191660 ~ 31191940 (+) |
| G1973170 | NA | non-coding | upstream | 28882 | 31185549 ~ 31185941 (+) |
| G1973160 | NA | non-coding | upstream | 36061 | 31178543 ~ 31178762 (+) |
| G1973157 | NA | non-coding | upstream | 37665 | 31176880 ~ 31177158 (+) |
| G1973219 | NA | non-coding | downstream | 57211 | 31277810 ~ 31278060 (+) |
| G1973226 | NA | non-coding | downstream | 75570 | 31296169 ~ 31296369 (+) |
| G1973233 | NA | non-coding | downstream | 85813 | 31306412 ~ 31306667 (+) |
| G1973238 | NA | non-coding | downstream | 91212 | 31311811 ~ 31312111 (+) |
| G1973193 | NA | other | upstream | 10832 | 31203615 ~ 31203991 (+) |
| G1973126 | NA | other | upstream | 57087 | 31157518 ~ 31157736 (+) |
| G1972252 | NA | other | upstream | 518509 | 30695233 ~ 30696314 (+) |
| G1972245 | NA | other | upstream | 534828 | 30659404 ~ 30679995 (+) |
| G1972244 | NA | other | upstream | 559784 | 30637054 ~ 30655039 (+) |
| G1973369 | NA | other | downstream | 166879 | 31387478 ~ 31387736 (+) |
| G1973635 | NA | other | downstream | 497925 | 31718524 ~ 31718968 (+) |
| G1973669 | NA | other | downstream | 566646 | 31787245 ~ 31789449 (+) |
| G1973717 | NA | other | downstream | 659511 | 31880110 ~ 31880820 (+) |
| LOC110505805 | LOC106602325 | other | downstream | 673384 | 31807487 ~ 31910358 (+) |
