LOC110505794


Basic Information

Item Value
gene id LOC110505794
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31274668 ~ 31282108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470871.2
tcctgctttagtttttgcctgTAAACAAGAATCATGGTAGAATTATTGTCAGATTGGCGAGGGAGagctctgtgtggagtaaaggtggtctggagATTTGTTCgcttctggttgcacatgtgacatgctggtagaaatgaggtaaaactgatgtaaatttgcctgcattaaagtccccggccactaggagcgccgcttctggatgagcattttctggTTTGATTTTGGCCTTATACAGCTctttgagtgcggtcttagtaccAGCAAGTTGCAGAGAACGACTGCATTGTTTGTTTATCTAGCTATCTAACAACTTACAAGGCAAGTATCACGGTCACGTTCATATTACCCACCTTGATGCTGCAGACTCTCCCACTGTGGTTCCAGCAACAGCTTTTCCAGAACCTTCTAGccagtggagggatggagggagtatGAGACCCCAGCTCCTCGCAGGTTAAACCCAAAGCCCACACTCTGGAACACCACTAAACTCCGGAACACCCAGAACACTACACAGCTGCACGGCTCCAGGACACAGAATACATCTCACACAGCGCAAGGAACCTTCTGGAGACCATCCCTAACAACAGCAGCAGCTTGGCAGCCAGAGGTGTGCAGCAGCAGTTTTCTTTGGGTtgccatagcaacacccaccgaTGGCAACCTGCAAACAGTGCAGTCCAGGtaagagggggaaaaaatattgtTTGTCATGTTTTCACAATTTGAAGACATAATTGGCTATCTTTAGTCTATTTGACTATTTCCTCCTCCCAAACAAAAACATGCATCTGTGCCATACCTGGGGCATTGTGCACTTTAAAAAGAACTGTATGATACTTCATAATGTTTAGCCAGTAAATATTTGacttattttatacattgtaaagtttgcacatcccttgacttttttatTGATCAAATAGAGATgtattgtcactggcctacacacaataccccataatgtcaaagtggaatgatgttttttgaaaaatgttgAAATGAATTAAaactgaaaagctgaaatgtcttgagtcaataagtattgaaGCCCTTTGTTCTGGCAAGCCtaaaagttgcatggactctgtgtgccaTTATAGTGTTTTAACATGGTTTTTGAATGAccccctcatctctgtactccacacatgcaattatctgtaaggtctctcagttcagcagtgaatttcaaacacagattcaaccacaaagaccagggaggttttcaaatgTCTCGCAAAGTACGCCACCTGTTGGTAGATGAAGAATAactcagacattgaatatccctttgtgcatgttgaagttattaattacatgtttgatgttgtatcaatacagccagtcactacaaagatacagatgtccttcctaactcagttaaa
>TU2255803
TGGCTATCTTTAGTCTATTTGACTATTTCCTCCTCCCAAACAAAAACATGCATCTGTGCCATACCTGGGGCATTGTGCACTTTAAAAAGAACTGTATGATACTTCATAATGTTTAGCCAGTAAATATTTGacttattttatacattgtaaagtttgcacatcccttgacttttttatTGATCAAATAGAGATgtattgtcactggcctacacacaataccccataatgtcaaagtggaatgatgttttttgaaaaatgttgAAATGAATTAAaactgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470871.2 False 1391 mRNA 0.42 3 31274668 31282108
TU2255803 True 281 lncRNA 0.32 1 31281459 31281739

Neighbor

gene id symbol gene type direction distance location
LOC110505790 LOC106611238 coding upstream 3211 31221492 ~ 31271457 (+)
LOC110505789 LOC106611239 coding upstream 54069 31214823 ~ 31220599 (+)
LOC110505788 LOC106611236 coding upstream 165642 31103284 ~ 31109026 (+)
LOC118944303 LOC106611235 coding upstream 192127 31080679 ~ 31082541 (+)
LOC110505784 LOC106611231 coding upstream 233848 31000516 ~ 31040820 (+)
LOC110505791 LOC106611240 coding downstream 5794 31287902 ~ 31290986 (+)
LOC110505795 LOC106611242 coding downstream 164803 31446911 ~ 31459466 (+)
LOC110505796 leg3 coding downstream 294375 31576483 ~ 31587632 (+)
LOC110505797 LOC106611243 coding downstream 307781 31589889 ~ 31618525 (+)
LOC118944345 NA coding downstream 358188 31640296 ~ 31642746 (+)
G1973197 NA non-coding upstream 66571 31207882 ~ 31208097 (+)
G1973182 NA non-coding upstream 82728 31191660 ~ 31191940 (+)
G1973170 NA non-coding upstream 88727 31185549 ~ 31185941 (+)
G1973160 NA non-coding upstream 95906 31178543 ~ 31178762 (+)
G1973157 NA non-coding upstream 97510 31176880 ~ 31177158 (+)
G1973226 NA non-coding downstream 14061 31296169 ~ 31296369 (+)
G1973233 NA non-coding downstream 24304 31306412 ~ 31306667 (+)
G1973238 NA non-coding downstream 29703 31311811 ~ 31312111 (+)
G1973250 NA non-coding downstream 57147 31339255 ~ 31339456 (+)
G1973348 NA non-coding downstream 80928 31363036 ~ 31363246 (+)
G1973193 NA other upstream 70677 31203615 ~ 31203991 (+)
G1973126 NA other upstream 116932 31157518 ~ 31157736 (+)
G1972252 NA other upstream 578354 30695233 ~ 30696314 (+)
G1972245 NA other upstream 594673 30659404 ~ 30679995 (+)
G1972244 NA other upstream 619629 30637054 ~ 30655039 (+)
G1973369 NA other downstream 105370 31387478 ~ 31387736 (+)
G1973635 NA other downstream 436416 31718524 ~ 31718968 (+)
G1973669 NA other downstream 505137 31787245 ~ 31789449 (+)
G1973717 NA other downstream 598002 31880110 ~ 31880820 (+)
LOC110505805 LOC106602325 other downstream 611875 31807487 ~ 31910358 (+)
G1973219 NA non-coding upstream 3399 31277810 ~ 31278060 (+)

Expression


Co-expression Network