LOC110505791 (LOC106611240)


Basic Information

Item Value
gene id LOC110505791
gene name LOC106611240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31287902 ~ 31290986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585233.2
TGTGCGTTCGTGTTCGCTCCCAGTCCATTCAAAAGATTAGAAGGGAGTGGTTTGAGCTTTGCGTGTTAGGAAAGCAACAAGTGgcatgtcttttttttttctttttttatgaaCTGCGGAACGTGGTGCTTACGTCACTGCTCTAGCCAGGTGGCATTCCAAACTGGGGAGAGGAGACGTGGAGGCACAATCAAAATTTCAAATCACAAACCAAGTCAGGATGTGAGACGCGTGTAAAGCACATTTCAGTCCTACAACCGATCACTGCTCGTCACTGGCATCGGAAGAGGAGTAGGGAAGGAAGAGGGTTCCTTTTTGGGGGCAAATTCACGGACTGAAAAGAAAAATTGCAATCATAATCTGGGGGGAAAAGGACCAGGGCAAGGGACATTCAACATGTCTTCTGCACATGTATCCTCATCTCGGAGACAGTCATGTTACCTGTGCGATTTACCCCGTATGCCTTGGGCTATGATTTGGGATTTTACGGAGGCAGTGTGCAGGGGTTGTGTGAATTATGAAGGTGCAGATCGGATCGAGTTTGTTATCGAAACTGCACGCCACCTCAAACGTGCTCATGGTTTCCAAGAGGGGAGATCCCCCGGTCCACCGCCGCCGCCCACAGTTAAAACCCAGGCGGCAATATCAGCCAAGGAGACGGTGCAAATCAACCATGTGGACGGACCatctaaacaacaacaacaacagtcggGGATGGACCGCTACTCTCTGAACGCAGAGAGACCTCGCTTTGACTACTCCAGTATTGGCGCCCATGCCAGCAGACTTCCGAATGGAATGAGCGGTCCAAATGGGTTCCCAAAACCGGACGATGGTCCCCCAGAGTTGAACCGACAGAGCCCGAACTCCCGTCGGAGCCATGGTCTAGTTGCGGTCCCAGGACAAATGAATGTCCCCCCCAACCTTCTCCCACAGACCATGTTGAATGGACCCTCCTCGGCAACAGCCATAGCCTCGCATAGCCTGTCTAGCCGCCCCCCACCATCCATTGTGGGACCCTCTTTGTCCACGTCCTCTCAGTCCATGTCAGAACAAGGTAAACGACCAGGTTCTGTGTCAAGCACTGACCAAGAGAGAGATCTGAAAGAGAAACAGCGTAATGCGGAGGCTTTGGCTGAGCTTAGTGAAAGTTTAAGAAATAGAAACGAAGACTGGGTAAACAAACCGAAAATAGTAAGGGACACTTTGCTTACTCTTTCAAACAGCTCCCCATTTGATGTGCGATTTAAAAAGGATCATTCACTCGTGGGCAGGGTGTTTGCTTTCGATGCAGTGTCAAAGCCTGGCATGGACTATGAATTGAAAATATTTATCGAGTACCCAAGTGGATCTGGTAATGTATTTTCCAGCGCATCGGGGGTGGCCAAACAAATGTATCAGGACTGCATGAAGGACTTTGGCAGAGGGCTCTCCTCGGGTTTTAAATATTTGGAGTATGAGAAAAAGCATGGTTCTGGGGACTGGCGACTCCTGGGTGATTTGTTGCCCGAGTCGGTCCGATTCTTTAAAGAGGGGCTGGGGGTTGAAATGTTGCCACAGCCCTACATTGATGCCAGCTGTCCATTGCTGCCCACTGCTTTGGTCAACATCCCTCGTGGCTTGCCATCTGCGAGTGCCCCGAGGATTGGCGTGCGTAAGCGTAAAGCCTCCCCAGAACCTGACTCCGCAGAGAGCGCGCTGAAACTATCTGAACAAGAACAACAGAGGCAGCAGTGGATGGCCAGCCAGAGCGAGGCGTTAAAACTGACGATGGCATCCGGATCATTCGGTACCTCACACGGGGCACCCCCACCGCTCGGCCCTGGTCATTCTGTTCACTCAAGCCGCGCTACGCCCCCTGAATCAACGCCCCAGAATGGACAGTCTCCAATGGCCGCGCTCATGTCTGTCGCGGACACGTTGGGCAATGCGCACTCCCCGAAGGACAACAACTCAGTTCACTCCACCACATCCACCAGGCATAACAGCAGCAGCCCGGTCTCGCCCGCCTCTGTTTCGGGGCAGAGGCGTTTGGCTTCCCGAAACGGAGAGCTCAATCTATCTGGGGGTCCCTCCCAGTCCAATGCACATTCTGGCATGGATCAGGTCCACGCGCAAAACATTCCAGATTCGCCCATGGCTAACAACGGACCTCTGTGTTGTACCATTTGCCACGAACGTTTAGAGGATACCCATTTCGTTCAGTGTCCGTCAGTTCCCAACCATAAATTCTGTTTCCCTTGTTCCCGAGAGAGCATCAAAGCGCAGGGAGCAACTGGCGAGGTGTATTGTCCTAGCGGAGAAAAATGCCCCCTGGTAGGTTCTAATGTGCCTTGGGCGTTCATGCAAGGTGAGATAGCAACAATATTAGCTGGGGACGTTAAGGTAAAAAAGGAGAGGGACCCATAGATATGTCCTATGGCTTCCCATAGAAACGTGCATTTTAGtccaatatatacagtatacacatgtGAATACTCAAAACGTACAAAAAATAGTTGATGTACAAAGACGTCCCCTCCTTctcatatttctgttttttgaaacAACGGAATAGTACAGTATGTGATGTCACCTAATTTTATGGGGGGTGTTTTGACGGGTACTAGTGTTGTATTTGGATGACAGTGACGAGTCAAAGCACGTTCACTTTGTCACTGCTGCCGTTTTCCCCTCCAACTCATGCACTTATCTCATTATAAAAAGGCCAGTTTAAACTCCCAATGAATACATGTCTGTAAAATGAAACTACGCATAGTAAATATCCAATAACAGTGATGACAATTTGCCCTAACTCCTATATTGGGTACAAATCATTCTGATTACTTTTTTTCGTTTATTTaatatattcatttttttttttacagcaagtATCTCTTTTCTTCTTGTGATCGAAAATATTTTACTACGTGTTATTCATTTCTCTTCCCGTTTGCTTTGATGATGCACGGATGCTTAAAAAGGTAGAGCAAAATGCTGTACATTAATGTAAACTGTTTGTTTATACATTTCTGTAGTAACAGAAGACTTGTAATGTGCCTTGGAGCTGAGTAAATTGTAATAAATTCCATTGATATTAACCCTT

Function

NR:

description
interferon regulatory factor 2-binding protein-like

GO: NA

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585233.2 True 3085 mRNA 0.48 1 31287902 31290986

Neighbor

gene id symbol gene type direction distance location
LOC110505794 NA coding upstream 5794 31274668 ~ 31282108 (+)
LOC110505790 LOC106611238 coding upstream 16445 31221492 ~ 31271457 (+)
LOC110505789 LOC106611239 coding upstream 67303 31214823 ~ 31220599 (+)
LOC110505788 LOC106611236 coding upstream 178876 31103284 ~ 31109026 (+)
LOC118944303 LOC106611235 coding upstream 205361 31080679 ~ 31082541 (+)
LOC110505795 LOC106611242 coding downstream 155925 31446911 ~ 31459466 (+)
LOC110505796 leg3 coding downstream 285497 31576483 ~ 31587632 (+)
LOC110505797 LOC106611243 coding downstream 298903 31589889 ~ 31618525 (+)
LOC118944345 NA coding downstream 349310 31640296 ~ 31642746 (+)
trnaa-ugc-181 NA coding downstream 399214 31690200 ~ 31690275 (+)
G1973219 NA non-coding upstream 9842 31277810 ~ 31278060 (+)
G1973197 NA non-coding upstream 79805 31207882 ~ 31208097 (+)
G1973182 NA non-coding upstream 95962 31191660 ~ 31191940 (+)
G1973170 NA non-coding upstream 101961 31185549 ~ 31185941 (+)
G1973226 NA non-coding downstream 5183 31296169 ~ 31296369 (+)
G1973233 NA non-coding downstream 15426 31306412 ~ 31306667 (+)
G1973238 NA non-coding downstream 20825 31311811 ~ 31312111 (+)
G1973250 NA non-coding downstream 48269 31339255 ~ 31339456 (+)
G1973348 NA non-coding downstream 72050 31363036 ~ 31363246 (+)
G1973193 NA other upstream 83911 31203615 ~ 31203991 (+)
G1973126 NA other upstream 130166 31157518 ~ 31157736 (+)
G1972252 NA other upstream 591588 30695233 ~ 30696314 (+)
G1972245 NA other upstream 607907 30659404 ~ 30679995 (+)
G1972244 NA other upstream 632863 30637054 ~ 30655039 (+)
G1973369 NA other downstream 96492 31387478 ~ 31387736 (+)
G1973635 NA other downstream 427538 31718524 ~ 31718968 (+)
G1973669 NA other downstream 496259 31787245 ~ 31789449 (+)
G1973717 NA other downstream 589124 31880110 ~ 31880820 (+)
LOC110505805 LOC106602325 other downstream 602997 31807487 ~ 31910358 (+)

Expression


Co-expression Network