LOC110505796 (leg3)


Basic Information

Item Value
gene id LOC110505796
gene name leg3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31576483 ~ 31587632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963033.1
TTACAAACGCACCCTTAATAAGTCCATGCAGAAGCGTTTGAAAACAAACCCAGGGCCAGTGCCATTGTTGATGCTACAGTATTTGCATTGAAAAAGTGCCCAGCAGTCAGGAAATCAAGTAAATCAAATACAATGGATCTTTCAGATGCTCTGGGTGGTGAACCGGGCTGGCCAAGCCAGAACAACCAGCAGAGTAGTGGGGGCGTGTGGCCTGGTGGGCAACCCAACCAGCCAACATGGCCAGGACAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCCGCCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCCGGACAACCAGGTGGGGGACAGCCCAGTCAGCCGACATGGCCAGGACAGATTAGCCAACCTACTGCACCCGGATGGCCAAGCCCAAGCCCCGGTCCAGGCCCTGCCCAACCAACTGCTCCACAACATAGTTCACTGAAAGTGCCATATGACCTGAACCTGCCAAATGGATGCTACGACAAGATGCTCATTACAATTCGTGGGACAGTTAACCAAAATGCCAAAATGTTCACCATCAATCTAACCAAAGGGAATGACATTGCCATGCACTTCAACCCACGCTTTAATGACCAGGGAAAGAAAACGATTGTGCGGAACAGTCAGATAGGCAATACatggggaaaagaggagagggagcaCAATCACTTCCCCTTCACTCAGGGACAGCCCTTCGAGATGAAGATCATGTGCACTAACAGTGAGTTCAAGGTGGCAGTGAACAGCTCACACATCCTGGAGTTCAAACACCGCATCCGTGATATCCAATCCATCAAACACCTGGTCATCTATAATGATGTCACCCTCACGTCTGTGGAGATTGACAAACTATAAGATCTAGCAGGGTTGGCTtcagccatagaaatagaatgaccaGATTAGCCAAAGTCCCTCGGGTTCTATTTTTATGGTTCCAGTGACCTTCCATCATTGAGCTTGAGTCTCAAGCTTTAACCCAGTAGTACTACCATCATATTCTGTACTTCTACTAAGCTGGTATATTCTCTgtggaaaaatatattttcttagtCTTTTAATAAGAGGAAAAAGTCAACAACTTAACTTACAAATTCATTGGTTTTAAGTCTGAATAGGTACATACATTTTAATGTAAACCACCTATATCCAATGTTATActcaaacatattttttttcattGACTGATATCGCTTCCTCCAGATACAGTATGCGTTTTTGTGATTTctttttaatttttattgttgtatAACCTTTCACACTAGGTGGCACAGTTGAGACTTGAATGTTTTAGAACCACAACAAGCCTAGTATTTGCTGTGGCAAAATAAACATTACCTTGGCTACCTATACC
>XM_021585238.2
TACTCTGCGGGTGTGGTCTCTCAGAAGCGAGACCGGGAAATAAAGGTGTGGCCTTGTGGGGGGAACCCGTTTATATACGCCCTGACACACAGCTTTCCCTGTCTACTGTATCTCTGCCAACTGAACGGAGCTACTAACAGATACAATGGATCTTTCAGATGCTCTGGGTGGTGAACCGGGCTGGCCAAGCCAGAACAACCAGCAGAGTAGTGGGGGCGTGTGGCCTGGTGGGCAACCCAACCAGCCAACATGGCCAGGACAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCCGCCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCCGGACAACCAGGTGGGGGACAGCCCAGTCAGCCGACATGGCCAGGACAGATTAGCCAACCTACTGCACCCGGATGGCCAAGCCCAAGCCCCGGTCCAGGCCCTGCCCAACCAACTGCTCCACAACATAGTTCACTGAAAGTGCCATATGACCTGAACCTGCCAAATGGATGCTACGACAAGATGCTCATTACAATTCGTGGGACAGTTAACCAAAATGCCAAAATGTTCACCATCAATCTAACCAAAGGGAATGACATTGCCATGCACTTCAACCCACGCTTTAATGACCAGGGAAAGAAAACGATTGTGCGGAACAGTCAGATAGGCAATACatggggaaaagaggagagggagcaCAATCACTTCCCCTTCACTCAGGGACAGCCCTTCGAGATGAAGATCATGTGCACTAACAGTGAGTTCAAGGTGGCAGTGAACAGCTCACACATCCTGGAGTTCAAACACCGCATCCGTGATATCCAATCCATCAAACACCTGGTCATCTATAATGATGTCACCCTCACGTCTGTGGAGATTGACAAACTATAAGATCTAGCAGGGTTGGCTtcagccatagaaatagaatgaccaGATTAGCCAAAGTCCCTCGGGTTCTATTTTTATGGTTCCAGTGACCTTCCATCATTGAGCTTGAGTCTCAAGCTTTAACCCAGTAGTACTACCATCATATTCTGTACTTCTACTAAGCTGGTATATTCTCTgtggaaaaatatattttcttagtCTTTTAATAAGAGGAAAAAGTCAACAACTTAACTTACAAATTCATTGGTTTTAAGTCTGAATAGGTACATACATTTTAATGTAAACCACCTATATCCAATGTTATActcaaacatattttttttcattGACTGATATCGCTTCCTCCAGATACAGTATGCGTTTTTGTGATTTctttttaatttttattgttgtatAACCTTTCACACTAGGTGGCACAGTTGAGACTTGAATGTTTTAGAACCACAACAAGCCTAGTATTTGCTGTGGCAAAATAAACATTACCTTGGCTACCTATACC
>XM_036963034.1
TACTCTGCGGGTGTGGTCTCTCAGAAGCGAGACCGGGAAATAAAGGTGTGGCCTTGTGGGGGGAACCCGTTTATATACGCCCTGACACACAGCTTTCCCTGTCTACTGTATCTCTGCCAACTGAACGGAGCTACTAACAGATACAATGGATCTTTCAGATGCTCTGGGTGGTGAACCGGGCTGGCCAAGCCAGAACAACCAGCAGAGTAGTGGGGGCGTGTGGCCTGGTGGGCAACCCAACCAGCCAACATGGCCAGGACAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCCGCCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCCGGACAACCAGGTGGGGGACAGCCCAGTCAGCCGACATGGCCAGGACAGATTAGCCAACCTACTGCACCCGGATGGCCAAGCCCAAGCCCCGGTCCAGGCCCTGCCCAACCAACTGCTCCACAACATAGTTCACTGAAAGTGCCATATGACCTGAACCTGCCAAATGGATGCTACGACAAGATGCTCATTACAATTCGTGGGACAGTTAACCAAAATGCCAAAATGTTCACCATCAATCTAACCAAAGGGAATGACATTGCCATGCACTTCAACCCACGCTTTAATGACCAGGGAAAGAAAACGATTGTGCGGAACAGTCAGATAGGCAATACatggggaaaagaggagagggagcaCAATCACTTCCCCTTCACTCAGGGACAGCCCTTCGAGATGAAGATCATGTGCACTAACAGTGAGTTCAAGGTGGCAGTGAACAGCTCACACATCCTGGAGTTCAAACACCGCATCCGTGATATCCAATCCATCAAACACCTGGTCATCTATAATGATGTCACCCTCACGTCTGTGGAGATTGACAAACTATAAGATCTAGCAGGGTTGGCTtcagccatagaaatagaatgaccaGATTAGCCAAAGTCCCTCGGGTTCTATTTTTATGGTTCCAGTGACCTTCCATCATTGAGCTTGAGTCTCAAGCTTTAACCCAGTAGTACTACCATCATATTCTGTACTTCTACTAAGCTGGTATATTCTCTgtggaaaaatatattttcttagtCTTTTAATAAGAGGAAAAAGTCAACAACTTAACTTACAAATTCATTGGTTTTAAGTCTGAATAGGTACATACATTTTAATGTAAACCACCTATATCCAATGTTATActcaaacatattttttttcattGACTGATATCGCTTCCTCCAGATACAGTATGCGTTTTTGTGATTTctttttaatttttattgttgtatAACCTTTCACACTAGGTGGCACAGTTGAGACTTGAATGTTTTAGAACCACAACAAGCCTAGTATTTGCTGTGGCAAAATAAACATTACCTTGGCTACCTATACC
>XM_021585237.2
ACTCTGCGGGTGTGGTCTCTCAGAAGCGAGACCGGGAAATAAAGGTGTGGCCTTGTGGGGGGAACCCGTTTATATACGCCCTGACACACAGCTTTCCCTGTCTACTGTATCTCTGCCAACTGAACGGAGCTACTAACAGATACAATGGATCTTTCAGATGCTCTGGGTGGTGAACCGGGCTGGCCAAGCCAGAACAACCAGCAGAGTAGTGGGGGCGTGTGGCCTGGTGGGCAACCCAACCAGCCAACATGGCCAGGACAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCCGCCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCCGGACAACCAGGTGGGGGACAGCCCAGTCAGCCGACATGGCCAGGACAGATTAGCCAACCTACTGCACCCGGATGGCCAAGCCCAAGCCCCGGTCCAGGCCCTGCCCAACCAACTGCTCCACAACATAGTTCACTGAAAGTGCCATATGACCTGAACCTGCCAAATGGATGCTACGACAAGATGCTCATTACAATTCGTGGGACAGTTAACCAAAATGCCAAAATGTTCACCATCAATCTAACCAAAGGGAATGACATTGCCATGCACTTCAACCCACGCTTTAATGACCAGGGAAAGAAAACGATTGTGCGGAACAGTCAGATAGGCAATACatggggaaaagaggagagggagcaCAATCACTTCCCCTTCACTCAGGGACAGCCCTTCGAGATGAAGATCATGTGCACTAACAGTGAGTTCAAGGTGGCAGTGAACAGCTCACACATCCTGGAGTTCAAACACCGCATCCGTGATATCCAATCCATCAAACACCTGGTCATCTATAATGATGTCACCCTCACGTCTGTGGAGATTGACAAACTATAAGATCTAGCAGGGTTGGCTtcagccatagaaatagaatgaccaGATTAGCCAAAGTCCCTCGGGTTCTATTTTTATGGTTCCAGTGACCTTCCATCATTGAGCTTGAGTCTCAAGCTTTAACCCAGTAGTACTACCATCATATTCTGTACTTCTACTAAGCTGGTATATTCTCTgtggaaaaatatattttcttagtCTTTTAATAAGAGGAAAAAGTCAACAACTTAACTTACAAATTCATTGGTTTTAAGTCTGAATAGGTACATACATTTTAATGTAAACCACCTATATCCAATGTTATActcaaacatattttttttcattGACTGATATCGCTTCCTCCAGATACAGTATGCGTTTTTGTGATTTctttttaatttttattgttgtatAACCTTTCACACTAGGTGGCACAGTTGAGACTTGAATGTTTTAGAACCACAACAAGCCTAGTATTTGCTGTGGCAAAATAAACATTACCTTGGCTACCTATACC

Function

NR:

description
galectin-3-like isoform X1

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06831 LGALS3; galectin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963033.1 False 1483 mRNA 0.47 6 31576483 31587632
XM_021585238.2 False 1451 mRNA 0.47 7 31577195 31587632
XM_036963034.1 False 1451 mRNA 0.47 7 31577195 31587632
XM_021585237.2 True 1495 mRNA 0.48 6 31577196 31587632

Neighbor

gene id symbol gene type direction distance location
LOC110505795 LOC106611242 coding upstream 117017 31446911 ~ 31459466 (+)
LOC110505791 LOC106611240 coding upstream 285497 31287902 ~ 31290986 (+)
LOC110505794 NA coding upstream 294375 31274668 ~ 31282108 (+)
LOC110505790 LOC106611238 coding upstream 305026 31221492 ~ 31271457 (+)
LOC110505789 LOC106611239 coding upstream 355884 31214823 ~ 31220599 (+)
LOC110505797 LOC106611243 coding downstream 2257 31589889 ~ 31618525 (+)
LOC118944345 NA coding downstream 52664 31640296 ~ 31642746 (+)
trnaa-ugc-181 NA coding downstream 102568 31690200 ~ 31690275 (+)
LOC110505805 LOC106602325 coding downstream 219855 31807487 ~ 31910358 (+)
LOC110504226 LOC100195551 coding downstream 347100 31934732 ~ 31977371 (+)
G1973462 NA non-coding upstream 112197 31464005 ~ 31464286 (+)
G1973458 NA non-coding upstream 115604 31460601 ~ 31460879 (+)
G1973397 NA non-coding upstream 143919 31428447 ~ 31432564 (+)
G1973394 NA non-coding upstream 151322 31424802 ~ 31425161 (+)
G1973393 NA non-coding upstream 151849 31424335 ~ 31424634 (+)
G1973563 NA non-coding downstream 20778 31608410 ~ 31608620 (+)
G1973564 NA non-coding downstream 21726 31609358 ~ 31609657 (+)
G1973568 NA non-coding downstream 25420 31613052 ~ 31613300 (+)
G1973605 NA non-coding downstream 85865 31673497 ~ 31675409 (+)
G1973369 NA other upstream 188747 31387478 ~ 31387736 (+)
G1973193 NA other upstream 372492 31203615 ~ 31203991 (+)
G1973126 NA other upstream 418747 31157518 ~ 31157736 (+)
G1972252 NA other upstream 880169 30695233 ~ 30696314 (+)
G1972245 NA other upstream 896488 30659404 ~ 30679995 (+)
G1973635 NA other downstream 130892 31718524 ~ 31718968 (+)
G1973669 NA other downstream 199613 31787245 ~ 31789449 (+)
G1973717 NA other downstream 292478 31880110 ~ 31880820 (+)
LOC110510947 LOC106611254 other downstream 433673 32021272 ~ 32135673 (+)

Expression


Co-expression Network