LOC110505811 (LOC106611271)


Basic Information

Item Value
gene id LOC110505811
gene name LOC106611271
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33695613 ~ 33698107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585265.2
TCAACTGGTCGGTGACGTCAGCTGAGTATATAACGGGGCTGGAGTTCAAGAGGACCACGAAAACAAGTTAGTGAAGCTTTGGTCTCAATGCACCCACCGGCCACCGGAGTTGGTCCAACAAGAGAAAAACACGCCAACGTCAACAAACTCGATGTTATGACGCAGATTTAGGAACTTTCCGCTGACTGTTTCCTGACCGAAACGAATTTAGGATTTTTAAAAGCAACGAGGTTTTTTATCATCCTTTCCAAGTATCGGTGATGCCCGCTGGTATGTTTAGCATCGACAGTATCCTGGCCGGGAGACCTACTTGCAAGGACTCAGTGCTCCTCCATCGGAATGCCCCGGTGGTGTTCTCGAACCTCACGGATTCCATCTACACCGCTGCCGATTATAATGGACTCTACTCGCACACTACTGGATCTTCTCCATCGGCCATCGAGGCGGTGAACGGGACTAGAATAGGATATAATAACTATTATTATGGACAAATGCATGTGCAGGGCCCCAGTGGCCCTGCTTGCTGCAGCGCTATCCCAGCCCTCGGCTCGCAACAGTGCCCGTGTATTCCAACCGGTTATGACCGCACGGGCTCCGTGCTCATCTCTCCCATCCCGCACCAGATGATGTCCTATATGAACGTGGGCACCTTGTCTCGGACGGAGCTCCAGCTCCTGAACCAGCTCCACTGCCGACGCAAGAGGAGGCACCGGACTATCTTCACCGACGAGCAGCTCGAGGCCCTGGAAAATCTATTTCAGGAGACCAAGTACCCTGACGTCGGCACACGGGAACAGCTCGCGCGAAGAGTGCACCTACGGGAAGAGAAGGTCGAGGTGTGGTTCAAAAACAGACGAGCGAAATGGAGAAGACAGAAAAGGTCGTCCTCGGAAGAGTCTGAAAACTCGCAGAAATGGAACAAATCGATGAAAACACTCGCAGAGAAAACCGAGGAAAACAAAAGTGACGTGGATTCGGACAGCTGATAGGTAGAATATTAACACAAAACAATAGAACGGTTGTATAGGTTGCATAGTGTATGGGTGGATGCGCAAATAGGCTACATACTCGATTGGGACTTCTTGTACATAGTGTAAATGTGATGTGGACTGAAGTAATGAACTATTTTGCCATGATGTTGCACAGTTGTATAGTAaatattacttttattattgCAATGGGGTAAGCTATTTATATTTAATTTAAAGTTGTTGTTATGCATAACGTCCCGAAGATGTGGTGAGCAAGGAGCCTTGATCCGTTTTCTGGCGTGTGTTAATACTTCGCGAGCTGACATGACATCTCATATTTGAGTGGTGTATTCATCATCACGATTTACCGCAAATAATATTTTGAAACTACATCAATGGGGAGAATATATTTCATAGAGTTAAACATAAATCACACTTAATATGAAACAGCGTTTTGTCACCTTTATAAGATAAAAGGACAAGGCTATATTTGTCAACTCATAACCATACAGACGTGTTTGGGGATTTGACTAAATTGATTTGTCAATATGTTGCAATGAATGATAATTACAGGAACAATGAATATACATTAAATCATATCTGAATCCTCTCTATTTCCTTTGTCACCTTTCACATTTGTTCATC

Function

NR:

description
homeobox protein goosecoid-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09324 GSC; homeobox protein goosecoid

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585265.2 True 1616 mRNA 0.45 3 33695613 33698107

Neighbor

gene id symbol gene type direction distance location
LOC118944264 NA coding downstream 20591 33672074 ~ 33675022 (-)
LOC110505810 LOC106611272 coding downstream 466338 33187619 ~ 33229275 (-)
LOC110504227 galc coding downstream 622081 33040661 ~ 33073532 (-)
LOC110505809 vrk1 coding downstream 744722 32925867 ~ 32950891 (-)
LOC118944262 NA coding downstream 1403766 32274667 ~ 32291847 (-)
LOC100136218 LOC106611270 coding upstream 66213 33764320 ~ 33829181 (-)
LOC118944291 NA coding upstream 139291 33837398 ~ 33838849 (-)
LOC110505812 LOC106611269 coding upstream 141727 33839834 ~ 33888222 (-)
LOC110505813 LOC106611262 coding upstream 233558 33931665 ~ 33981041 (-)
LOC110505815 LOC106611267 coding upstream 291890 33989997 ~ 34016972 (-)
G1975900 NA non-coding downstream 30954 33664164 ~ 33664659 (-)
G1975879 NA non-coding downstream 45429 33649954 ~ 33650184 (-)
G1975877 NA non-coding downstream 46540 33648801 ~ 33649073 (-)
G1975847 NA non-coding downstream 73337 33621971 ~ 33622276 (-)
G1975776 NA non-coding downstream 131315 33564088 ~ 33564298 (-)
G1975998 NA non-coding upstream 53329 33751436 ~ 33751669 (-)
G1976137 NA non-coding upstream 150407 33848514 ~ 33848892 (-)
G1976172 NA non-coding upstream 205427 33903534 ~ 33908448 (-)
G1976174 NA non-coding upstream 206720 33904827 ~ 33909698 (-)
G1976256 NA non-coding upstream 283256 33981363 ~ 33982345 (-)
G1975763 NA other downstream 138802 33556430 ~ 33556811 (-)
G1975453 NA other downstream 371288 33319729 ~ 33324325 (-)
G1974000 NA other downstream 1708729 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2077114 31614421 ~ 31618499 (-)
G1973793 NA other downstream 2110567 31584540 ~ 31585046 (-)
G1977046 NA other upstream 779513 34477620 ~ 34478809 (-)
G1977226 NA other upstream 1177278 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 1272045 34970065 ~ 35000444 (-)
G1977346 NA other upstream 1328993 35027100 ~ 35100978 (-)
G1977392 NA other upstream 1354943 35053050 ~ 35056926 (-)

Expression


Co-expression Network