LOC110505815 (LOC106611267)


Basic Information

Item Value
gene id LOC110505815
gene name LOC106611267
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33989997 ~ 34016972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585269.2
CTGCGCGCATCGAAACAACTGTGTAGTTGCTAACCAATGACAATCGGAGGAAATCTTTCGGAGTATAGATTCCCAAGCAGCCGTATTTATACACAACCTACACATCATCAAACCCTTTTGCAATGCCTGTCAGAACGCTTGGTTGTCCGTGAGCGAGAAGATGCGTTGGTATTCAAAGCCGTATACCTGTAGGACAAGTCATGGACTGAACGGGCTTTTGGACTCACTTGTGGAATTTTATGCTTGCCCGTGGCACGATGCCTTATCTGACTAAACCGCTGTTTTTACTCTTCTGTTTGGTCGTCACCGGGGAATGCCGTAGGCTTGGACACCGAGTACGGAGATGGACGGAAACCGTGGAGACGGCAAAGCATGGACCAGAGACCACAAAGCATGGCCCTTCCTTGACAAAGAAACCTCCAGATGTGACCAAGAATCGCAAGCTGAAGACAGAGCAGCTTCTGAAAGTAGATGATcatgatttcaccatgaggccggcatttggagGCCCTGCTATCCCAGTCGGAGTGGACGTACAGGTGGAGAGCCTGGATAGCATCTCAGAAGTCGACATGGACTTCACCATGACCCTGTACCTGAGACACTATTGGAAGGACGAGCGTCTGTCCTTCACCAGCTCCACCAATAAGAGCATGACATTTGACGGGCGTCTGGTCAAGAAGATCTGGGTGCCCGATGTGTTCTTCGTCCACTCCAAGAGATCCTTCATCCATGACACCACCACAGTCAACATCATGCTCAGGGTCTTTCCCGACGGACACGTTCTGTACAGCCTGAGGGTGACAGTGACAGCAGCCTGTAACATGGACTTCAGCCGCTTCCCTTTGGACACCCAGTCCTGCTCCCTGGAGCTAGAGAGCTATGCATATACGGATGAGGACCTGATGCTGTACTGGAAGAGTGGGGATGAGTCCTTGAGTACGGATGACCGTATCTCCTTGTCTCAGTTCCTCATCCAGAAGTTCCACACCACATCTCGGCTGGCCTTCTACAGCAGTACTGGCTGGTACAACCGTCTGTACATCAACTTCACCCTGCGGAGACACATCTTCTTCTTCCTGCTTCAGACCTACTTCCCGGCTACCCTCATGGTTATGCTGTCTTGGGTGTCCTTCTGGATCGACCGCAGGGCCGTCCCAGCTCGTGTCTCCCTGGGTATCACTACAGTGCTCACCATGTCCACCATCATCACTGGAGTCAACGCCTCCATGCCCAGAGTATCCTACATCAAAGCAGTGGACATCTACCTGTGGGTCAGCTTCGTGtttgtcttcctgtctgtcctgGAGTACGCTGCTGTCAACTACTTGTCCACTGCACAGGACCGCAGGGAACGCAAGATGAGAGACGAGATGAGGGAAAGGGCCAGGTCACAGTCGCTGCCCTGCACCTGTGGCATGTCCCAGACCAGGACCATGCTATTAGACGGGACCTACAGCGAGGCGGACACTAACAGCCTGGCCGGCTACACCTCAGGAACTATGGGGCCCGAGGAGGACATGGATATGCCCCGCGACATGATGACTGAGAAGCAGCCTCCTGGAGAACATACAGTGGTCCACCTGTCTGCCAGCAGCGAGTCAACGACAACCAAGAAGAAAGGCATCAGGGCCCTCAATATTATCCAGAATACACACACCATCGACAAGTACTCCAGGATGTTATTCCCTGGCTCCTATATCCTATTCAACATAATCTACTGGTGTTCATACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGCCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGAGTAGAGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGAGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGATCTACTGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGCAGAGTCTACTGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTGGAGTCTACTGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGCAGAGTCTACTGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTCTTGTTTAGTAGCGTAGGGTCTAATGTTTAGGAGCGTAGGATCTAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGGTCTCTTGTTTAGGAGCGTAGGGGCTAATGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGATCTACTGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGGTCTACTGTTTAGGAGCGTAGGATCTACTGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGTAGGATCAAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGCAGAGTCTACTGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGAGTCTAATGTTTAGGAGCGCAGAGTCTACTGTTTAGGAGCGTAGGATCGAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGAGTCTACTGTTTAGGAGCGTAGGGTCTCTTGTTTAGTAGCGTAGGGTCTAATGTTTAGGAGCGTAGGATCTAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGGTCTCTTGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGAGCGTAGGGTCTAATGTTTAGGCGCAGTATTGGCCCTGGTCAattgtagtgcactatctaggaaatagggtgccatttgggatgcatcctatgTTCATCAAATGAATGTGTTTAACACACTCATCAAGGACAAGAGAGGCTGCAGTTGGTGTTTACATGGACATTTGGTACTAATGGCTAATATTTAGGATGGACTTTTGACTGCGGCACTGGCCTATATGAGACTGATCTAtcctgaaaaaatatataaatgcaacatgcaacaatttcaataattttactgagttacagaaaTCAACCAATTGAAATTAATTTCTTatgtcctaatctatggatttcacatgactgggcaggggcacagccatgggtgggcctgggagggcataggcacacccactggggagccaggcccagccaatcagaatgagtttttctccacaaaagggctttattactgaTATAAATATTCCTCAGTCCCATCAGCtgcctgggtggctggtctcagatgaagaagttggatgtggaggtcttgggctggcgtggttacacgtggtctgcgtttgtgaggccagttggacgtactgccaaattctctaaa

Function

NR:

description
gamma-aminobutyric acid receptor subunit rho-2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585269.2 True 4473 mRNA 0.49 9 33989997 34016972

Neighbor

gene id symbol gene type direction distance location
LOC110505813 LOC106611262 coding downstream 8956 33931665 ~ 33981041 (-)
LOC110505812 LOC106611269 coding downstream 101775 33839834 ~ 33888222 (-)
LOC118944291 NA coding downstream 151148 33837398 ~ 33838849 (-)
LOC100136218 LOC106611270 coding downstream 160816 33764320 ~ 33829181 (-)
LOC110505811 LOC106611271 coding downstream 291890 33695613 ~ 33698107 (-)
LOC110504228 NA coding upstream 36579 34053551 ~ 34059575 (-)
eif2s1a if2a coding upstream 52184 34069156 ~ 34072609 (-)
mpp5a LOC106611266 coding upstream 56242 34073214 ~ 34117847 (-)
gphna LOC106611263 coding upstream 101204 34118176 ~ 34235545 (-)
LOC118944181 NA coding upstream 150488 34167460 ~ 34168258 (-)
G1976257 NA non-coding downstream 1040 33982437 ~ 33988957 (-)
G1976256 NA non-coding downstream 7652 33981363 ~ 33982345 (-)
G1976174 NA non-coding downstream 80299 33904827 ~ 33909698 (-)
G1976172 NA non-coding downstream 81549 33903534 ~ 33908448 (-)
G1976137 NA non-coding downstream 141105 33848514 ~ 33848892 (-)
G1976307 NA non-coding upstream 32954 34049926 ~ 34050169 (-)
G1976331 NA non-coding upstream 46947 34063919 ~ 34064216 (-)
G1976333 NA non-coding upstream 47727 34064699 ~ 34065929 (-)
G1976821 NA non-coding upstream 51308 34068280 ~ 34068460 (-)
G1976857 NA non-coding upstream 127475 34144447 ~ 34145605 (-)
G1975763 NA other downstream 433186 33556430 ~ 33556811 (-)
G1975453 NA other downstream 665672 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2003113 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2371498 31614421 ~ 31618499 (-)
G1973793 NA other downstream 2404951 31584540 ~ 31585046 (-)
G1977046 NA other upstream 460648 34477620 ~ 34478809 (-)
G1977226 NA other upstream 858413 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 953180 34970065 ~ 35000444 (-)
G1977346 NA other upstream 1010128 35027100 ~ 35100978 (-)
G1977392 NA other upstream 1036078 35053050 ~ 35056926 (-)

Expression


Co-expression Network