LOC110504230 (LOC106611223)


Basic Information

Item Value
gene id LOC110504230
gene name LOC106611223
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34292468 ~ 34442343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962383.1
ATTAGAAGCCAAGCATAGCGGAGTGACTACTCGTCAGGCGCGCAGCAGTCCTGCTCCTACCCAGTTCCTGTTTCCGCCTTCTGTCTTCAGACAGTTTACAACTCAAAGCATCATGTTCAGGCAGAATATAGACCTTGAAGAAATGCAAGCTCAATGAGATAAAGCCAGgaagAAGTTGTTCTCTGGATTCCCAAGTGAGGATTCTGTGAGGCTTCTAAAAAAGAGCAGAAGACCACTGAGAGCCAGAGAGACTGAGCCGTCTGCCAGTCAGTCAGAGGACTGCAGAGACACAGAGGGTGACACCAGTGAGCTGGCCAGACTACCAGAGCCCGGCTCAGCACAAGCCCAAACCAGCCTAGCCCAGAGAGGGCCCACCCAGGAAGGCAGGCCACAACAATGGACCTCAACCCATCCTAACCCCCTGCAGGAACCATAGCCATGCATTAACTAACCCCACCAACCAAACCCCAACTGGACCACGCTCACCTCCTCCGTTCTCCCTCCACCCTACGCCCTCCATCGCCGTTCTCACCATGCTTCAGAGCCTATTGTGACGGGAGTGCTGCTCACCCCCCCATCCCTCACCCCTCCGCCACAGAGACCCCAGAGGGGTGAAAGATGCGGCCATGGGCAGGTTCGTGGCGCTGGATTATGCTGGTGCTCCTTGCGTGGGGTACACTGCTGTTCTACATCGGAGGACACCTGGTTAGGGACAGCGAGCATCCGGAGAGATCCAGCAGAGACCTTTCCAAGATCCTGGCCAAGCTGGAGAGACTGAAACAGCAGAATGAGGACCTGAGACGCATGGCTGAGACACTCAGgttaccAGAGGGTCAGTCTGACGGGGGCCAGGTGGTGAGCGCTGGGAGACTGCGGATCCTGGAGGAACAGCTGATCAGAGCTAAAGAACAGATAAACTCCTATCGTAGCCTGCCTGGAgacgGGCCAGGTAGGAACCAGGAGGAGCTGCGGAGGAAGATAGAGAACGGGGTGAAGGAGATCTGGTACTTTGTCCGCAGTGAGGTCAAGAAGCTGGGTCACATGGAGCAGGGGGACCTGCAGAAACACAGCGACACACTGCTGCAGGAGCTGGGACACCAGCAgagGTCGATCATGACTGacctgcactacctgagccaagCTGATGGAgcaggagactggagagagaaggaggccAAGGACCTGTCTGACATGGTACAGAATAGAATCACATACctccagaACCCCCAGGACTGCTCCAAGGCTAGGAAGCTGGTGTGTAACATCAACAAGGGCTGTGGCTACGGCTGCCAGCTGCACCACGTGGTCTACTGCTTCATGATCGCGTACGGCACCCAGCGTACCCTCATCCTGGAGTCCCAGAACTGGCGCTACGCCACAGGCGGCTGGGAGACCGTCTTcctcccagtcagtcagacatGCACCGACCGCACCGGAGTCACCACCGGACACTGGTCAGgTGAGGCTAACGACAGAGACATCCAGGTGGTAGAGTTACCCATCGTTGACAGTCTCCACCCCCGCCCCCCCTACCTGCCCCTGGCTATCCCAGAGGACCTGGCCCAGCGCCTCCACCGGCTCCATGGAGACCCGTCCGTGTGGTGGGTGTCTCAGTTGGTCAAGTACCTGATCCGGCCCCAGGCCTGGCTGGAGAAAGAGATCCAGGATACCACCGCCAAACTGGGCTTCAGCCACCCCATCATAGGGGTCCATGTGCGACGGACAGATAAAGTGGGGACAGAGGCAGCCTTCCACCCTATAGAGGAGTACATGGTTCATGTAGAAGACCACTTCCAACATCTGGCTAGACGCATGCTGGTGAACAAGAAGAGAGTCTACCTGGCCACCGACGACCCCGCACTACTAAAGGAGGCCAAGGCTAAgtaCCCAGACTATGAGTTCATCAGTGATAACTCCATCTCGTGGTCTGCGGGGCTACATAACCGCTACACGGAGAATTCACTGAGAGGAGTCATCCTGGACATTCACTTCCTGTCACAGACCAACTTCCTGGTCTGCACCTTCTCCTCACAGGTGTGTCGTGTGGCATATGAGATCATGCAGACCCTCCATCCGGACGCCTCGTCTCACTTCCACTCCCTGGATGACATCTACTACTTTGGTGGCCAGAACGCCCACAACCAGCTAGCCGTGTATGCCCACCAGCCCCGCAGCCCCGACGACATCCCCCTGGAGCCCGGCGACCTGATCGGGGTGGCGGGGAACCACTGGGACGGAAACTCCAAAGGCATCAACCGCAAGACGGGCCGTACCGGCCTCTACCCGTCCTACAAGGTGAAGGAGAAGATCGAGACCATCAAGTATCCTACGTACCCCGAGGCAGACAAGATGCTGAATCagtagagagagactgagatgcaGACTGAGATGCAGACTGAGATACAGACTGAGATGCAGACTGAGGTACAGACTGAAATGCAGACTGAGTTGCAGACTGAGATACAGACTGAGATGCAGACTGAGATGCAGACTGAGATGCAGACTGAGATGCAGACTGAGATTCAGACTTGGGTGCAGACTGGGGTGCAGACTGAGATGCAGACTGAGATGCAGACTGAGTTGCAGACTGATATACAGACTGAGATACAGACCGATATGCCGACTGATGGGCCGACTGAGATGCCGACAGATGCAGACTGCAATGCAGACTGAGATGCAGACTGAGAtgcagactgagagacagactgagatgcAGACTGAGACGCAGACTGAGATACAGACCCGAGATACAGACCTGAGATACAGACTGAGatacagactgagagacagactgagatgcAGACTGATATGCAGACTGAGATGCAGACTGAGACGCAGACTGAGATACAGACCCGAGATACAGACCTGAGATGCAGACTGAGGTACAGACTGAGATGCAGACTGAGCGACAGACTGAGATGCAGACTGAGATACAGACCTGAGAtgcagactgagagacagactgagatacAGACGCACACTGCTCACttatgagaggagagagaccctCAGCCCGGTAGAGGGGACGAGGAGGAAAGCACTTTGAACGAGTGGTGGTGTTTGTCGGTGGAAGGgtttgcgtgtgtgagtgtgttcatgcttgcttgcatgtgtgtgcgtgcgtgagtgacaGAGGAGTATCTACAGAGTATCTACAGGGTATCTGACGTACTCCTGACCCTCGGGGACTAGGACCCTCCAGTGGATCCCTCCATCAGGATGGTTAATAAGACAACAATGAACGAATGAATGAACGACAAGAAGAAA
>XM_036962384.1
ATTAGAAGCCAAGCATAGCGGAGTGACTACTCGTCAGGCGCGCAGCAGTCCTGCTCCTACCCAGTTCCTGTTTCCGCCTTCTGTCTTCAGACAGTTTACAACTCAAAGCATCATGTTCAGGCAGAATATAGACCTTGAAGAAATGCAAGCTCAATGAGATAAAGCCAGgaagAAGTTGTTCTCTGGATTCCCAAGTGAGGATTCTGTGAGGCTTCTAAAAAAGAAGACCACTGAGAGCCAGAGAGACTGAGCCGTCTGCCAGTCAGTCAGAGGACTGCAGAGACACAGAGGGTGACACCAGTGAGCTGGCCAGACTACCAGAGCCCGGCTCAGCACAAGCCCAAACCAGCCTAGCCCAGAGAGGGCCCACCCAGGAAGGCAGGCCACAACAATGGACCTCAACCCATCCTAACCCCCTGCAGGAACCATAGCCATGCATTAACTAACCCCACCAACCAAACCCCAACTGGACCACGCTCACCTCCTCCGTTCTCCCTCCACCCTACGCCCTCCATCGCCGTTCTCACCATGCTTCAGAGCCTATTGTGACGGGAGTGCTGCTCACCCCCCCATCCCTCACCCCTCCGCCACAGAGACCCCAGAGGGGTGAAAGATGCGGCCATGGGCAGGTTCGTGGCGCTGGATTATGCTGGTGCTCCTTGCGTGGGGTACACTGCTGTTCTACATCGGAGGACACCTGGTTAGGGACAGCGAGCATCCGGAGAGATCCAGCAGAGACCTTTCCAAGATCCTGGCCAAGCTGGAGAGACTGAAACAGCAGAATGAGGACCTGAGACGCATGGCTGAGACACTCAGgttaccAGAGGGTCAGTCTGACGGGGGCCAGGTGGTGAGCGCTGGGAGACTGCGGATCCTGGAGGAACAGCTGATCAGAGCTAAAGAACAGATAAACTCCTATCGTAGCCTGCCTGGAgacgGGCCAGGTAGGAACCAGGAGGAGCTGCGGAGGAAGATAGAGAACGGGGTGAAGGAGATCTGGTACTTTGTCCGCAGTGAGGTCAAGAAGCTGGGTCACATGGAGCAGGGGGACCTGCAGAAACACAGCGACACACTGCTGCAGGAGCTGGGACACCAGCAgagGTCGATCATGACTGacctgcactacctgagccaagCTGATGGAgcaggagactggagagagaaggaggccAAGGACCTGTCTGACATGGTACAGAATAGAATCACATACctccagaACCCCCAGGACTGCTCCAAGGCTAGGAAGCTGGTGTGTAACATCAACAAGGGCTGTGGCTACGGCTGCCAGCTGCACCACGTGGTCTACTGCTTCATGATCGCGTACGGCACCCAGCGTACCCTCATCCTGGAGTCCCAGAACTGGCGCTACGCCACAGGCGGCTGGGAGACCGTCTTcctcccagtcagtcagacatGCACCGACCGCACCGGAGTCACCACCGGACACTGGTCAGgTGAGGCTAACGACAGAGACATCCAGGTGGTAGAGTTACCCATCGTTGACAGTCTCCACCCCCGCCCCCCCTACCTGCCCCTGGCTATCCCAGAGGACCTGGCCCAGCGCCTCCACCGGCTCCATGGAGACCCGTCCGTGTGGTGGGTGTCTCAGTTGGTCAAGTACCTGATCCGGCCCCAGGCCTGGCTGGAGAAAGAGATCCAGGATACCACCGCCAAACTGGGCTTCAGCCACCCCATCATAGGGGTCCATGTGCGACGGACAGATAAAGTGGGGACAGAGGCAGCCTTCCACCCTATAGAGGAGTACATGGTTCATGTAGAAGACCACTTCCAACATCTGGCTAGACGCATGCTGGTGAACAAGAAGAGAGTCTACCTGGCCACCGACGACCCCGCACTACTAAAGGAGGCCAAGGCTAAgtaCCCAGACTATGAGTTCATCAGTGATAACTCCATCTCGTGGTCTGCGGGGCTACATAACCGCTACACGGAGAATTCACTGAGAGGAGTCATCCTGGACATTCACTTCCTGTCACAGACCAACTTCCTGGTCTGCACCTTCTCCTCACAGGTGTGTCGTGTGGCATATGAGATCATGCAGACCCTCCATCCGGACGCCTCGTCTCACTTCCACTCCCTGGATGACATCTACTACTTTGGTGGCCAGAACGCCCACAACCAGCTAGCCGTGTATGCCCACCAGCCCCGCAGCCCCGACGACATCCCCCTGGAGCCCGGCGACCTGATCGGGGTGGCGGGGAACCACTGGGACGGAAACTCCAAAGGCATCAACCGCAAGACGGGCCGTACCGGCCTCTACCCGTCCTACAAGGTGAAGGAGAAGATCGAGACCATCAAGTATCCTACGTACCCCGAGGCAGACAAGATGCTGAATCagtagagagagactgagatgcaGACTGAGATGCAGACTGAGATACAGACTGAGATGCAGACTGAGGTACAGACTGAAATGCAGACTGAGTTGCAGACTGAGATACAGACTGAGATGCAGACTGAGATGCAGACTGAGATGCAGACTGAGATGCAGACTGAGATTCAGACTTGGGTGCAGACTGGGGTGCAGACTGAGATGCAGACTGAGATGCAGACTGAGTTGCAGACTGATATACAGACTGAGATACAGACCGATATGCCGACTGATGGGCCGACTGAGATGCCGACAGATGCAGACTGCAATGCAGACTGAGATGCAGACTGAGAtgcagactgagagacagactgagatgcAGACTGAGACGCAGACTGAGATACAGACCCGAGATACAGACCTGAGATACAGACTGAGatacagactgagagacagactgagatgcAGACTGATATGCAGACTGAGATGCAGACTGAGACGCAGACTGAGATACAGACCCGAGATACAGACCTGAGATGCAGACTGAGGTACAGACTGAGATGCAGACTGAGCGACAGACTGAGATGCAGACTGAGATACAGACCTGAGAtgcagactgagagacagactgagatacAGACGCACACTGCTCACttatgagaggagagagaccctCAGCCCGGTAGAGGGGACGAGGAGGAAAGCACTTTGAACGAGTGGTGGTGTTTGTCGGTGGAAGGgtttgcgtgtgtgagtgtgttcatgcttgcttgcatgtgtgtgcgtgcgtgagtgacaGAGGAGTATCTACAGAGTATCTACAGGGTATCTGACGTACTCCTGACCCTCGGGGACTAGGACCCTCCAGTGGATCCCTCCATCAGGATGGTTAATAAGACAACAATGAACGAATGAATGAACGACAAGAAGAAA
>TU2259906
ACTACTCGTCAGGCGCGCAGCAGTCCTGCTCCTACCCAGTTCCTGTTTCCGCCTTCTGTCTTCAGACAGTTTACAACTCAAAGCATCATGTTCAGGCAGAATATAGACCTTGAAGAAATGCAAGCTCAATGAGATAAAGCCAGgaagAAGTTGTTCTCTGGATTCCCAAGTGAGGATTCTGTGAGGCTTCTAAAAAAGAGCAGAAGACCACTGAGAGCCAGAGAGACTGAGCCGTCTGCCAGTCAGTCAGAGGACTGCAGAGACACAGAGGGTGACACCAGTGAGCTGGCCAGACTACCAGAGCCCGGCTCAGCACAAGCCCAAACCAGCCTAGCCCAGAGAGGGCCCACCCAGGAAGGCAGGCCACAACAATGGACCTCAACCCATCCTAACCCCCTGCAGGAACCATAGCCATGCATTAACTAACCCCACCAACCAAACCCCAACTGGACCACGCTCACCTCCTCCGTTCTCCCTCCACCCTACGCCC
>TU2259910
ACTACTCGTCAGGCGCGCAGCAGTCCTGCTCCTACCCAGTTCCTGTTTCCGCCTTCTGTCTTCAGACAGTTTACAACTCAAAGCATCATGTTCAGGCAGAATATAGACCTTGAAGAAATGCAAGCTCAATGAGATAAAGCCAGgaagAAGTTGTTCTCTGGATTCCCAAGTGAGGATTCTGTGAGGCTTCTAAAAAAGAAGACCACTGAGAGCCAGAGAGACTGAGCCGTCTGCCAGTCAGTCAGAGGACTGCAGAGACACAGAGGGTGACACCAGTGAGCTGGCCAGACTACCAGAGCCCGGCTCAGCACAAGCCCAAACCAGCCTAGCCCAGAGAGGGCCCACCCAGGAAGGCAGGCCACAACAATGGACCTCAACCCATCCTAACCCCCTGCAGGAACCATAGCCATGCATTAACTAACCCCACCAACCAAACCCCAACTGGACCACGCTCACCTCCTCCGTTCTCCCTCCACCCTACGCCC

Function

GO:

id name namespace
GO:0036071 N-glycan fucosylation biological_process
GO:0033578 protein glycosylation in Golgi biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962383.1 False 3267 mRNA 0.55 11 34292468 34442343
XM_036962384.1 False 3262 mRNA 0.55 11 34292468 34442343
TU2259906 False 490 lncRNA 0.54 3 34327972 34442318
TU2259910 True 485 lncRNA 0.54 3 34327972 34442318

Neighbor

gene id symbol gene type direction distance location
gphna LOC106611263 coding downstream 56923 34118176 ~ 34235545 (-)
LOC118944181 NA coding downstream 124210 34167460 ~ 34168258 (-)
mpp5a LOC106611266 coding downstream 174621 34073214 ~ 34117847 (-)
eif2s1a if2a coding downstream 219859 34069156 ~ 34072609 (-)
LOC110504228 NA coding downstream 232893 34053551 ~ 34059575 (-)
pth2 NA coding upstream 256826 34699169 ~ 34700207 (-)
rin3 LOC106611275 coding upstream 273385 34715728 ~ 34739802 (-)
LOC110505825 LOC106611276 coding upstream 332541 34774884 ~ 34893972 (-)
LOC110504231 LOC106611278 coding upstream 455233 34897576 ~ 34912793 (-)
LOC118944354 LOC106611278 coding upstream 470567 34912910 ~ 34950168 (-)
G1976932 NA non-coding downstream 3750 34288389 ~ 34288718 (-)
G1976915 NA non-coding downstream 26215 34266050 ~ 34266253 (-)
G1976901 NA non-coding downstream 45680 34240002 ~ 34246788 (-)
G1976897 LOC106585398 non-coding downstream 63969 34227858 ~ 34228499 (-)
G1976896 NA non-coding downstream 64833 34226704 ~ 34227635 (-)
G1977027 NA non-coding upstream 3436 34445779 ~ 34446335 (-)
G1977030 NA non-coding upstream 11971 34454314 ~ 34455801 (-)
G1977046 NA non-coding upstream 35782 34477620 ~ 34478809 (-)
G1977048 NA non-coding upstream 36870 34479213 ~ 34479649 (-)
G1977049 NA non-coding upstream 37696 34480039 ~ 34480322 (-)
G1975763 NA other downstream 735657 33556430 ~ 33556811 (-)
G1975453 NA other downstream 968143 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2305584 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2673969 31614421 ~ 31618499 (-)
G1973793 NA other downstream 2707422 31584540 ~ 31585046 (-)
G1977226 NA other upstream 433042 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 527809 34970065 ~ 35000444 (-)
G1977346 NA other upstream 584757 35027100 ~ 35100978 (-)
G1977392 NA other upstream 610707 35053050 ~ 35056926 (-)

Expression


Co-expression Network