Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504230 |
| gene name | LOC106611223 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 34292468 ~ 34442343 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0036071 | N-glycan fucosylation | biological_process |
| GO:0033578 | protein glycosylation in Golgi | biological_process |
| GO:0032580 | Golgi cisterna membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008424 | glycoprotein 6-alpha-L-fucosyltransferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036962383.1 | False | 3267 | mRNA | 0.55 | 11 | 34292468 | 34442343 |
| XM_036962384.1 | False | 3262 | mRNA | 0.55 | 11 | 34292468 | 34442343 |
| TU2259906 | False | 490 | lncRNA | 0.54 | 3 | 34327972 | 34442318 |
| TU2259910 | True | 485 | lncRNA | 0.54 | 3 | 34327972 | 34442318 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gphna | LOC106611263 | coding | downstream | 56923 | 34118176 ~ 34235545 (-) |
| LOC118944181 | NA | coding | downstream | 124210 | 34167460 ~ 34168258 (-) |
| mpp5a | LOC106611266 | coding | downstream | 174621 | 34073214 ~ 34117847 (-) |
| eif2s1a | if2a | coding | downstream | 219859 | 34069156 ~ 34072609 (-) |
| LOC110504228 | NA | coding | downstream | 232893 | 34053551 ~ 34059575 (-) |
| pth2 | NA | coding | upstream | 256826 | 34699169 ~ 34700207 (-) |
| rin3 | LOC106611275 | coding | upstream | 273385 | 34715728 ~ 34739802 (-) |
| LOC110505825 | LOC106611276 | coding | upstream | 332541 | 34774884 ~ 34893972 (-) |
| LOC110504231 | LOC106611278 | coding | upstream | 455233 | 34897576 ~ 34912793 (-) |
| LOC118944354 | LOC106611278 | coding | upstream | 470567 | 34912910 ~ 34950168 (-) |
| G1976932 | NA | non-coding | downstream | 3750 | 34288389 ~ 34288718 (-) |
| G1976915 | NA | non-coding | downstream | 26215 | 34266050 ~ 34266253 (-) |
| G1976901 | NA | non-coding | downstream | 45680 | 34240002 ~ 34246788 (-) |
| G1976897 | LOC106585398 | non-coding | downstream | 63969 | 34227858 ~ 34228499 (-) |
| G1976896 | NA | non-coding | downstream | 64833 | 34226704 ~ 34227635 (-) |
| G1977027 | NA | non-coding | upstream | 3436 | 34445779 ~ 34446335 (-) |
| G1977030 | NA | non-coding | upstream | 11971 | 34454314 ~ 34455801 (-) |
| G1977046 | NA | non-coding | upstream | 35782 | 34477620 ~ 34478809 (-) |
| G1977048 | NA | non-coding | upstream | 36870 | 34479213 ~ 34479649 (-) |
| G1977049 | NA | non-coding | upstream | 37696 | 34480039 ~ 34480322 (-) |
| G1975763 | NA | other | downstream | 735657 | 33556430 ~ 33556811 (-) |
| G1975453 | NA | other | downstream | 968143 | 33319729 ~ 33324325 (-) |
| G1974000 | NA | other | downstream | 2305584 | 31986443 ~ 31986884 (-) |
| G1973835 | LOC106611243 | other | downstream | 2673969 | 31614421 ~ 31618499 (-) |
| G1973793 | NA | other | downstream | 2707422 | 31584540 ~ 31585046 (-) |
| G1977226 | NA | other | upstream | 433042 | 34875385 ~ 34876181 (-) |
| LOC110505829 | LOC106611279 | other | upstream | 527809 | 34970065 ~ 35000444 (-) |
| G1977346 | NA | other | upstream | 584757 | 35027100 ~ 35100978 (-) |
| G1977392 | NA | other | upstream | 610707 | 35053050 ~ 35056926 (-) |
