LOC118944354 (LOC106611278)


Basic Information

Item Value
gene id LOC118944354
gene name LOC106611278
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34912910 ~ 34950168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962990.1
GTCTATTTGTAGTGACTCcagttcagtgttcagtgttgtTCAACGGTCCGTTGAGCGTCGGGAAGAAGCGGGCTCTTTACTGGGAGAAATGGCTTGAATGACCGGCGAGTAAGACACATTTTCCCGTTTCATCGGGTGAATGTTTTAACTTTGGAGGTTTTAAATCCTGACGAATTGCCTTTACCAAGTAAGGAACTATGGCAAACGTGAAAGTCGCCATTCGAGTTCGCCCTCTCAACGCAAGGGAAAGCGTGGCTGGAGGGAGGCTAGCTGTCCAGGTAGAGGACAAGTTGGTGAGGATAAGGAATACCAAGCTGGATGGACGTCACGACGGCCCTGGGGAATCCAGGGAGAAGGTGCTGGAGTTTGGTTTTGactactgctactggtctgttgcCCCAGAGGAACCACACTACGCCTCACAAGAAGAGGTGTTCCAGGACCTGGGAGTGACGGTGCTGGCTGGGGCGTCAGAGGGCTACAACGTCTGTCTGTTTGCCTACGGGCAGACTGGCACTGGCAAGACCTACACCATGATGGGCACACTGgaCTCCATGGGCCTGACCCCCAGGATTTGTCAGGGCCTGTTCAAATCTGATGACACATTCCCCGAAGGACACAACTCAAGCAGGGTTGAGATCAGTTTCCTGGAGATCTACAATGAGCGTGTTCGTGACCTGCTGCGAGGCAGAGAGCAGAAGAAGAAACCCTCCCTACGGGTTAGGGAGCATCCTGAGAAAGGACCCTATGTACAAGacCTGTCCCAGCATGTGGTGTCTGACTACAAGCAGGCGGTGGACCTATTGGAGGAGGGCATTGCCAACCGCATCACCGCGGCAACACACATCCACGACACTAGCAGCAGATCCCATGCCATCTTCACCATCCAGTACACCCAGGCTATTCTGGAGGACAACCTTCCCTCAGAGATTGTAAGCAAGATCAACCTGGTAGACCTGGCTGGCAGTGAGAGAGCAGACCCCCACTACTGCAGAGACAGACTCACTGAGGGATCCAACATCAACAAGTCCCTGGTGACACTGGGTATCGTCATCTCTGCTCTGGCCCAGAACTCTCAGATGTCCAGTAGTTGTCAGAGCATCAACAGTGTGGCCAGTCacaccagctgtctgtctggtggtggtggtggaggagggagaagacaCTGCTTCATCCCCTACAGGGACTCAGTCCTCACCTGGCTCCTCAAAGACAGCCTGGGAGGAAACGCTAAGACCATCATGATCGCCACTGTGTCCCCATCCAGTAGCAGCTACAATGAGACTCTCAGCACCCTGCGCTACGCTGCTCACGCTAGGAACATCGTCAACAAGCCCAGGGTCAATGAGGATGCCAGTGTGAGGCTGATCCGAGAGCTACGTGAGGAGATAGACAGGCTGAAGAGAACGCTTCTCAGCTTCCAGATGCAACTGAATCCTAGCCCTTCTCTGAGTGATCAGAGAGACGGGAGTCTGTCTGACATCGTGTTGCAGAACGAACTAAAGGTGGATGAGCTGACGAAGGACTGGTCAGAGAGCTGGCGGGACAAGAAGGAGCTGTTGGAACAGTACAGTGTGGATATCAACAGAGACTGGGGTGGGTTCCTCATCCACTCCCTGTTACCACATCTCATTACCCTGGACCGGGACGTACTCAGCACCGGGGTCACCTTCTATCACCTCAGGGTATATACAATACACAATTTAGGATACTAATACATACTTCCTCATCCACTTCCTGTTACCTTCTACCACCTCAGGGTATATACAATACACACTTTAGGATACTAATACATACTTCCTCATCCACTTCCTGTTACCTTCTATCACCTTAGGGTatgagcacacacacatgaatacacagaccacaatcatacacacacacacacacacacccctgcacaCACccctgcacacacaaacacacacaaccacggAACCATTGACATTCTTCTATACTACCTCTGTATATTCTGTTCTTGACTTTCTCTGACTAAAATGTCTCTCTTTTGGTCTATTACATTCTGTTCTTCCTTCTCTCTGTTCTGCTTGCTGTACCAGATGCATCTCACTCCATCCTCTCTCATGTTTCTCCCTCGTTCCTGGTGTTTTCACTTCTCTAATGGCTGAATGTGATTGGATAAGAGGCATTCCGTTGTGAGGCGCTCAGGGGACGTAGCTACAACTGTCCTGATTCTGACAGCGGCTAGAATGTCTTTAGGCCTGGCGATTATACCACTGTATTTAAAGATGGAAACCACCTGGAAATCCATAGTGTTCCTGTAGTTACATAATATAGCCTTTTTTTCCCACAAGATAGCATTTGATAAACAAATACTTGTTTTGCTGACAGGTAGCCTAAGTGTAGGGGTCAGAGTTTaaatgtcatttagcagacactcttatccatagcaacttacaggagcagttATGTGCTTTTCTCAAGACACATCAATAGATTTTTCACGTAGTCGGCgttgggatttgaaccagcaatctTCCAGTTGCTGGCCCAAcattcttaaccgctaggctacctgacaccaGAGTTCTGTGGAAGTCATATTTTGACATAGTAGAACACTGTGTGTTAGTCATTTTATCTCAACCCACCTATTTCAACGCAACTGTGCCTTTGTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTATACAGACTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTATACAGACTGATCCTTTAAAGGCTGATCCTTTACAGACTGATCCTTTACAGGCTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTATACAGACTGATCCTTTACAGACTGATCCTTTACAGACTGATCCTATACAGACTGATCCTTTACAGACTGATCCTATTCAGACTGATCCTTTACAGACTGATTCTTTACAGACTGATCCTTTACAGACTGATCCTATACAGACTGATCGTATACAAACTGATCCTGCACCAGCTGATCCTATACCAACTGATCCTATACCAACTGATCCTATACCAGCTCCCATCCTAGACAGCCTGCTAACGGAAGATTCGGAAGGTTCTGATGAAGAGAGTGATCAAAGAGTTGCTCCACCCTCTAAAGTGGTTCTATACAGGAATAAGGTGGTTCAGGAGGAGTTGTCAAGACATCATACCCTGCGGCGCGCCGAGAGCCATGTTCGACACAAAAGGCTGCACTACCAGCTGGAGAGGATCGCTCGCAAGCGCCATCTACTGGACGCTAAGAGGGAACTGCAGAGGCTAGAGAAGGCCCTGCCACCTGGACTAGAGAGCCCTGTGTCTCCTGGCCTGGGGTCCCCCTCAAGGTCAAGAGGACATCAACCTGTTTTGCACAGGCATTCTGTCTCATCAGACCTGCTGTCCCGCTTATACCCCCAACACACCCCAAT

Function

NR:

description
PREDICTED: stAR-related lipid transfer protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962990.1 True 3477 mRNA 0.49 15 34912910 34950168

Neighbor

gene id symbol gene type direction distance location
LOC110504231 LOC106611278 coding downstream 117 34897576 ~ 34912793 (-)
LOC110505825 LOC106611276 coding downstream 18938 34774884 ~ 34893972 (-)
rin3 LOC106611275 coding downstream 173108 34715728 ~ 34739802 (-)
pth2 NA coding downstream 212703 34699169 ~ 34700207 (-)
LOC110504230 LOC106611223 coding downstream 470567 34292468 ~ 34442343 (-)
LOC118944135 NA coding upstream 9633 34959801 ~ 34961283 (-)
LOC110505829 LOC106611279 coding upstream 19897 34970065 ~ 35000444 (-)
LOC110505831 LOC106611283 coding upstream 166316 35116484 ~ 35141705 (-)
LOC110505834 LOC106611287 coding upstream 449220 35399388 ~ 35402421 (-)
LOC118944372 NA coding upstream 551761 35501929 ~ 35503809 (-)
G1977237 NA non-coding downstream 11252 34901455 ~ 34901658 (-)
G1977235 NA non-coding downstream 16282 34896077 ~ 34896628 (-)
G1977161 NA non-coding downstream 140598 34756308 ~ 34772312 (-)
G1977163 NA non-coding downstream 156480 34755488 ~ 34756430 (-)
G1977345 NA non-coding upstream 16058 34966226 ~ 34967869 (-)
G1977355 NA non-coding upstream 35327 34985495 ~ 34985987 (-)
G1977370 NA non-coding upstream 56072 35006240 ~ 35006454 (-)
G1977373 NA non-coding upstream 59342 35009510 ~ 35009751 (-)
G1977226 NA other downstream 36729 34875385 ~ 34876181 (-)
G1977046 NA other downstream 434352 34477620 ~ 34478809 (-)
G1975763 NA other downstream 1356099 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1588585 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2926026 31986443 ~ 31986884 (-)
G1977346 NA other upstream 76932 35027100 ~ 35100978 (-)
G1977392 NA other upstream 102882 35053050 ~ 35056926 (-)
G1979142 NA other upstream 1261778 36211946 ~ 36216230 (-)
LOC110504237 LOC106611328 other upstream 1395406 36325431 ~ 36370245 (-)

Expression


Co-expression Network